Identifying non-B DNA structures relevance in several critical functions of Human genome has been an enigma for several decades. One such structure which is the crux of those investigations is G-Quadruplex DNA. Presence of G-Quadruplex DNA in telomeres, promoters and close proximity with proto-oncogenes has generated interest as possible drug target. This raises the interesting possibility of DNA sequence and/or other cis- elements as determinants of recombination. My computational analyses have revealed that recombination hotspots harbor significantly higher number of G-Quadruplex DNA than the recombination coldspots. Several supporting elements in this regard provide us an opportunity to decipher the role of non-canonical sequences in formation of non-B DNA structure with involvement in recombination along with multitude of cellular factors.