In this thesis we propose novel approaches to including semantic knowledge into reconstruction processes using template based shape processing. We formulate shape reconstruction as a deformable template fitting process, where we try to fit a given template model to the sampled data. This approach allows us to present novel solutions to several fundamental problems in the area of shape reconstruction. We address static problems like constrained texture mapping and semantically meaningful hole-filling in surface reconstruction from 3D scans, temporal problems such as mesh based performance capture, and finally dynamic problems like the estimation of physically based material parameters of animated templates.