# |  | Author/Editor | Month | Year | | | Title | |
36 |
 | Bachelor thesis |
|  |
 |  | Binsl, Thomas | Nov | 2004 |  |  | Implementation of a Generic Fragment
Based Method for Automated
Calculation of the Octanol-Water
Partition Coefficient
Universität des Saarlandes |  |
| | Djoumbou, Yannick | Dec | 2005 |  | | Docking studies to investigate the effect of correlated mutations in the HIV-Protease on the drug resistance of HIV
Universität des Saarlandes |  |
 |  | Döring, Matthias | Sep | 2011 |  | | Web Implementation of the HBV Dual Infection Model
Universität des Saarlandes |  |
| | Dörr, Barbara | Oct | 2010 |  | | Using copy number variation fpr predicting susceptibility to glioblastoma
Universität des Saarlandes |  |
 |  | Ebert, Peter | Oct | 2009 |  | | Computational Analysis of genomic HPV data
Universität des Saarlandes |  |
| | Eyrisch, Susanne | Mar | 2004 |  |  | Fun2Struc-A Tool For Predicting Protein Structure
Classes from Function Predictions
Universität des Saarlandes |  |
 |  | Frings, Oliver | Jan | 2006 |  | | Development of a
Smith-Waterman-Like Multi-Aspect
Alignment Tool
Universität des Saarlandes |  |
| | Galata, Valentina | Jun | 2012 |  | | Applying Lasso regression to related cell types for gene network astimation
Universität des Saarlandes |  |
 |  | Gatzmann, Fanny | Sep | 2010 |  | | GOdot Sequence - function prediction from protein sequence
Universität des Saarlandes |  |
| | Glaab, Enrico | Feb | 2006 |  | | On the predictability of CpG methylation in human tissue at single basepair resolution
Universität des Saarlandes |  |
 |  | Hobler, Anna | Jun | 2006 |  | | Docking of monosaccharids into the wild type and mutants of pyranose 2-oxidase
Universität des Saarlandes |  |
| | Immesberger, Stefan | Jan | 2005 |  |  | A Prefiltering Method to Speed up Protein
Structure Prediction
Universität des Saarlandes |  |
 |  | Junge, Alexander | Sep | 2011 |  | | Unsupervised dissection of cancer types based on genomic, epigenomic and transciptomic features
Universität des Saarlandes |  |
| | Jung, Holger | Dec | 2006 |  | | Yamada Analyzer - A tool for fast calculation of genomic attributes
Universität des Saarlandes |  |
 |  | Kacprowski, Tim | May | 2010 |  | | Analysis of protein complexes and tissue-spedific expression
Universität des Saarlandes |  |
| | Kaspar, Melanie | Jan | 2005 |  |  | Conformational Analysis of Macrocyclic Ring Systems
Universität des Saarlandes |  |
 |  | Klingen, Thorsten | Mar | 2012 |  | | Automatic Recombination Analysis Using Recoo and Mebitoo
Universität des Saarlandes |  |
| | König, Eva | Jun | 2010 |  | | Env-wide analysis of coreceptor determining sites and subtype-specific differences in HIV-1
Universität des Saarlandes |  |
 |  | Krier, Markus | Jun | 2005 |  |  | Motif Search in Protein Sequences for Protein
Structure Prediction
Universität des Saarlandes |  |
| | Mangels, Miriam | Feb | 2009 |  | | In Silico Models for the Prediction of Metabolism by Cytochrome P450 Enzymes
Universität des Saarlandes |  |
 |  | Meiser, Ina | Jul | 2005 |  | | Identification of functionally important regions in cytochrome P450 systems and a systematic analysis of various CYP P450 homology models
Universität des Saarlandes |  |
| | Müller, Fabian | Feb | 2008 |  | | Inferring virological response to antiretroviral combination therapy based on past treatment lines
Universität des Saarlandes |  |
 |  | Nickels, Stefan | Sep | 2005 |  |  | Generating Molecular Hashcodes for
Finding Duplicates in Virtual Screening
Libraries
Universität des Saarlandes |  |
| | Perner, Juliane | Nov | 2008 |  |  | Semi-Supervised Learning for Predicting Anti-HIV Drug Resistance
Universität des Saarlandes |  |
 |  | Pfeifer, Susanne | Sep | 2006 |  | | Development of a fast
geometry-based screening
compound prefiltering technique
Universität des Saarlandes |  |
| | Reimer, Daniela | Jun | 2006 |  | | Docking studies to investigate the effect of correlated mutations in the HIV-Protease on the drug resistance of HIV
Universität des Saarlandes |  |
 |  | Reuter, Kerstin | Sep | 2011 |  | | Estimating and Using the Uncertainty in the Phenotypic Resistance Assay of the Hepatitis B Virus to Improve IC-50 Prediction from Genotype
Universität des Saarlandes |  |
| | Schlicker, Andreas | Sep | 2004 |  |  | Automated Differential Analysis of Proteomes
Universität des Saarlandes |  |
 |  | Speicher, Nora K. | Dec | 2010 |  | | Network analysis of viral host factors
Universität des Saarlandes |  |
| | Stöckel, Daniel | Nov | 2008 |  | | Protein Surface Remeshing and Characterisation Using Morse-Smale Complexes
Universität des Saarlandes |  |
 |  | Volkamer, Andrea | Apr | 2005 |  |  | Implementation of a method to filter
out compounds with toxic, reactive
and unsuitable functional groups
Universität des Saarlandes |  |
| | Weimann, Aaron | May | 2009 |  | | Using multidimensional Scaling for visualizing similarities of proteins
Universität des Saarlandes |  |
 |  | Weiss, Julia | Jun | 2005 |  |  | Generating Frequency Profiles from Multiple
Structure Alignments
Universität des Saarlandes |  |
| | Yalak, Garif | Feb | 2005 |  |  | Analysis of Mutations in the Death Domains, Death Effector Domains, Caspase
Recruitment Domains, and Pyrin Domains
Universität des Saarlandes |  |
 |  | Zeidler, Michael | Sep | 2012 |  | | Cloudbasierte Analyse von viralen Sequenzdaten der neuesten Generation
Universität des Saarlandes |  |
| | Zimmer, Tobias | Jun | 2006 |  | | Functional Site Scaffolds
Universität des Saarlandes |  |
54 |
|  |
| | Alexa, Adrian | Mar | 2005 |  | | Integrating the GO graph structure in scoring the
significance of Gene Ontology terms
Universität des Saarlandes |  |
 |  | Assenov, Yassen | Nov | 2006 |  | | Topological Analysis of Biological
Networks
Universität des Saarlandes |  |
| | Bader, Mathias | Oct | 2012 |  | | Clustering epigenetic data using a Dirichlet process prior
Universität des Saarlandes |  |
 |  | Bastys, Tomas | Nov | 2012 |  |  | MAP Kinase Docking Motifs in HIV Proteins
Universität des Saarlandes |  |
| | Bayjanov, Jumamurat | Oct | 2004 |  | | Scoring pathway activity from gene
expression data
Universität des Saarlandes |  |
 |  | Binsl, Thomas |  | 2006 |  | | Feature Prints: A new method for calculating molecular similarities
Universität des Saarlandes |  |
| | Bogojeska, Jasmina | Jan | 2007 |  | | Stability analysis of oncogenetic trees mixture models
Universität des Saarlandes |  |
 |  | Diehl, Sarah | Jun | 2009 |  | | Analysis and reconstruction of protein complex topology
Universität des Saarlandes |  |
| | Dietzen, Matthias | Aug | 2007 |  | | An additive tree-based approach to the prediction of the strength of acidity for drug-like molecules
Universität des Saarlandes |  |
 |  | Djoumbou, Yannick | Dec | 2008 |  | | Molecular Dynamics based prediction of HIV-1 drug resistance
Universität des Saarlandes |  |
| | Doncheva, Nadezhda, T. | Jul | 2009 |  | | Analysis and visualization of residue interaction networks
Universität des Saarlandes |  |
 |  | Eldarov, Nasimi | Sep | 2012 |  | | Modeling influenza evolution in response to immune system pressure
Universität des Saarlandes |  |
| | Feuerbach, Lars | Sep | 2007 |  |  | Towards Comparative Epigenomics: A Pilot Study on DNA Methylation of CpG Islands on Human Chromosome 21
Universität des Saarlandes |  |
 |  | Fischer, Sandra | Mar | 2008 |  | | Structure-based prediction of HIV-1 drug resistance
Universität des Saarlandes |  |
| | Guo, Xin | Jun | 2006 |  | | Improving Fold Recognition Using Protein
and Domain Interactions
Universität des Saarlandes |  |
 |  | Gwinner, Frederik | Feb | 2009 |  | | Assessing the Conservation of Protein Function on Evolutionary Defined Patches
Universität des Saarlandes |  |
| | Haid, Carla | Sep | 2007 |  | | BSIFlex: Binding Site Identification including protein flexibility
Universität des Saarlandes |  |
 |  | Halachev, Konstantin | Sep | 2006 |  | | EpiGRAPHregression: A toolkit for (epi-)genomic correlation analysis and prediction of quantitative attributes
Universität des Saarlandes |  |
| | Hauschild, Anne-Christin | | 2011 |  | | Modeling HIV Neutralization
Universität des Saarlandes |  |
 |  | Hoinka, Jan-Malte | Feb | 2011 |  | | Finding the Hairpin in the Haystack: Towards an High Throughput in Silico Pipeline for Aptamer Motif Identification using SELEX Data
Universität des Saarlandes |  |
| | Ifrim, Georgiana | May | 2005 |  | | A Bayesian Learning Approach to Concept-Based Document Classification
Universität des Saarlandes |  |
 |  | Ivanova, Violeta |  | 2011 |  | | Comparison of methods for discovering genomic aberrations relevant for cancer
Universität des Saarlandes |  |
| | Jing, Cui | | 2011 |  | | A comprehensive analysis of the illumina Infinium assay
Universität des Saarlandes |  |
 |  | Kacprowski, Tim | Dec | 2011 |  | | Disease gene prioritization by combining network information and functional knowledge
Universität des Saarlandes |  |
| | Kalaghatgi, Prabhav | Jun | 2012 |  | | A Phylodynamic Study of HIV Transmission Networks in Europe
Universität des Saarlandes |  |
 |  | Kaspar, Melanie | Jul | 2006 |  | | Automated conformational analysis of macrocyclic ring systems
Universität des Saarlandes |  |
| | Kircher, Martin | May | 2007 |  | | In silico analysis of microRNA genes on human chromosome 14 and mouse chromosome 12
Universität des Saarlandes |  |
 |  | König, Eva | Jul | 2012 |  | | Automatic detection of loss of heterozygosity in cancer
Universität des Saarlandes |  |
| | Korbel, Ulli S. | May | 2007 |  | | Identification of Symmetries in Molecules and Complexes
Universität des Saarlandes |  |
 |  | Koser, Sandra | Mar | 2012 |  | | Reconstructing anecestral methylation states in phylogenetic trees
Universität des Saarlandes |  |
| | Kuhn Cuellar, Luis Eugenio | May | 2010 |  | | A probabilistic algorithm for matching protein structures - and its application to detecting functionally relevant patterns
Universität des Saarlandes |  |
 |  | Loi, Luu Phuc | Aug | 2010 |  | | Identifying discriminative motifs for molecular function of proteins
Universität des Saarlandes |  |
| | Lutsik, Pavlo | Apr | 2010 |  | | Processing of high-throughput DNA methylation data
Universität des Saarlandes |  |
 |  | Müller, Fabian | Jul | 2009 |  | | Assessing Antibody Neutralization of HIV-1 as an Initial Step in the Search for gp160-based Immunogens
Universität des Saarlandes |  |
| | Müller, Joachim | May | 2012 |  | | Extracting pathways from biological networks incorporating omics data, introducing a webinterface for KeyPathwayMiner
Universität des Saarlandes |  |
 |  | Müller, Oliver | Sep | 2007 |  | | Using Shape Retrieval Techniques for Identifying Similar Protein Binding Sites
Universität des Saarlandes |  |
| | Perner, Juliane | Nov | 2010 |  | | Finding local similarities in gene expression patterns between partially reprogrammed cells and know cell types using a module network approach
Universität des Saarlandes |  |
 |  | Pironti, Alejandro | Jul | 2009 |  | | Probabilistic disease gene prioritization
Universität des Saarlandes |  |
| | Ramírez, Fidel | | 2004 |  | | Hacia una comprension de la accion de la recombinacion genetica y la mutacion en el origen de la variacion fenotipica, mediante el analisis de la computacion evolutiva
Universidad Nacional de Colombia |  |
 |  | Schelhorn, Sven-Eric | Jun | 2007 |  | | Prediction of Domain and Motif Interactions from Protein Networks
Universität des Saarlandes |  |
| | Schlicker, Andreas | Aug | 2005 |  | | A Global Approach to Comparative Genomics: Comparison of Functional Annotation over the Taxonomic Tree
Universität des Saarlandes |  |
 |  | Schüffler, Peter | Apr | 2008 |  | | MethMarker – A toolkit for design, optimization and validation of DNA methylation biomarkers for cancer diagnosis and therapy optimization
Universität des Saarlandes |  |
| | Sing, Tobias | Apr | 2004 |  | | Learning localized rule mixtures by maximizing the area under the ROC curve, with an application to the prediction of HIV-1 coreceptor usage
Universität Freiburg |  |
 |  | Siu, Shirley Weng-In | Sep | 2005 |  | | Computational prediction of MHC-peptide interactions
Universität des Saarlandes |  |
| | Speicher, Nora | Dec | 2012 |  | | Towards the identification of cancer subtypes by integrative clustering of molecular data
Universität des Saarlandes |  |
 |  | Stöckel, Daniel | Apr | 2010 |  | | History Based HIV Therapy Outcome Prediction
Universität des Saarlandes |  |
| | Thielen, Alexander | Mar | 2006 |  | | Prediction of linear B-cell epitopes and MHC class II binding peptides
Eberhardt-Karls-Universität Tübingen |  |
 |  | Tolosi, Laura | Jun | 2006 |  | | Analysis of Array CGH Data for the Estimation of Genetic Tumor Progression
Universität des Saarlandes |  |
| | Trajkovski, Igor | Sep | 2004 |  | | Analysis of protein binding pocket flexibility
Universität des Saarlandes |  |
 |  | Volkamer, Andrea | Aug | 2007 |  | | Automated generation of pharmacophore type constraints to improve FlexX docking
Universität des Saarlandes |  |
| | Weimann, Aaron | | 2011 |  | | Functional Profiling in Metagenomics
Universität des Saarlandes |  |
 |  | Weinhold, Nils | Dec | 2006 |  | | Inference of Protein Function based on Functionally Conserved Regions in Sequence and Structure Space
Universität des Saarlandes |  |
| | Weisser, Hendrik | Sep | 2007 |  | | Estimating the local variance of protein structure models
Universität des Saarlandes |  |
 |  | Yin, Junming | Mar | 2005 |  | | Model Selection for Mixtures of Mutagenetic Trees
Universität des Saarlandes |  |
21 |
 | Doctoral dissertation |
|  |
 |  | Albrecht, Mario | Feb | 2006 |  | | Combining protein structure prediction with experiments and functional information
Universität des Saarlandes |  |
| | Altmann, André | Mar | 2010 |  | | Bioinformatical approaches to ranking of anti-HIV combination therapies and planning of treatment schedules
Universität des Saarlandes |  |
 |  | Beerenwinkel, Niko | Dec | 2003 |  |  | Computational Analysis of HIV Drug Resistance Data
Universität des Saarlandes |  |
| | Bock, Christoph | Oct | 2008 |  | | Computational Epigenetics - Bioinformatic methods for epigenome prediction, DNA methylation mapping and cancer epigenetics
Universität des Saarlandes |  |
 |  | Bogojeska, Jasmina | Dec | 2011 |  |  | Statistical Learning Methods for Bias-aware HIV Therapy Screening
Universität des Saarlandes |  |
| | Bozek, Katarzyna | Dec | 2011 |  |  | Analysis of HIV-host interaction on different scales.
Universität des Saarlandes |  |
 |  | Emig, Dorothea | Feb | 2011 |  | | Novel analysis approaches to context-dependent molecular networks
Universität des Saarlandes |  |
| | Hartmann, Christoph | Jul | 2008 |  | | Modeling of Flexible Side Chains for Protein-Ligand Docking
Universität des Saarlandes |  |
 |  | Johannsen, Daniel | Apr | 2010 |  | | Random Combinatorial Structures and Randomized Search Heuristics
Universität des Saarlandes |  |
| | Kunert, Lars | | 2011 |  | | Maximal Common Subgraph DAGs: Theory and Application to Virtual Screening in Drug Development
Universität des Saarlandes |  |
 |  | Maydt, Jochen | Dec | 2008 |  | | Analysis of recombination in Molecular Sequence Data
Universität des Saarlandes |  |
| | Patil, Kaustubh Raosaheb | Jan | 2013 |  | | Genome Signature based Sequence Comparison for Taxonomic Assignment and tree inference
Universität des Saarlandes |  |
 |  | Ramirez, Fidel | Apr | 2012 |  | | Novel Approaches to the Integration and Analysis of Systems Biology
Universität des Saarlandes |  |
| | Sander, Oliver | Dec | 2008 |  | | Structural Descriptors for the Analysis of Protein Structure, Function, and Evolution
Universität des Saarlandes |  |
 |  | Schlicker, Andreas | Nov | 2010 |  |  | Ontology-based Similarity Measures and their Application in Bioinformatics
Universität des Saarlandes |  |
| | Sing, Tobias | Apr | 2008 |  | | Model-Based Anti HIV Therapy
Universität des Saarlandes |  |
 |  | Steffen, Andreas | Jan | 2008 |  | | Computational Approaches in Supramolecular Chemistry with a special Focus on Virtual Screening
Universität des Saarlandes |  |
| | Talwar, Priti | Nov | 2008 |  | | Development of Computational Methods for Metabolic Network Analysis based on Metabolomics Data
Universität des Saarlandes |  |
 |  | Thielen, Alexander | Jun | 2011 |  | | Genotypic Analysis of HIV-1 Coreceptor Usage
Universität des Saarlandes |  |
| | Tolosi, Laura | Sep | 2012 |  | | Finding Regions of Aberrant DNA Copy Number Associated With Tumor Phenotype
Universität des Saarlandes |  |
 |  | Zhu, Hongbo | Jun | 2010 |  | | Characterization, classification and alignment of protein-protein interfaces
Universität des Saarlandes |  |
3 |
 | Habilitation thesis |
|  |
 |  | Antes, Iris | Feb | 2009 |  | | Computational Methods for the Investigation of Protein-Ligand Interactions
Universität des Saarlandes |  |
| | Rahnenführer, Jörg | Oct | 2006 |  | | Statistical methods for the biological interpretation of genome-wide measurements
Universität des Saarlandes |  |
 |  | Sommer, Ingolf | Sep | 2009 |  |  | From Protein Structure to Function
Universität des Saarlandes |  |
4 |
 | Diploma thesis |
|  |
 |  | Blankenburg, Hagen | Mar | 2007 |  | | A Distributed Annotation System for Molecular Interactions
Ruprecht Karl Universität Heidelberg; Universität Heilbronn |  |
| | Emig, Dorothea | Mar | 2007 |  | | The Impact of Alternative Splicing on Protein Interaction Networks
Eberhard Karls Universität Tübingen |  |
 |  | Huthmacher, Carola | May | 2006 |  | | Decomposing Protein Networks Into
Domain-Domain Interactions
Eberhard Karls University Tübingen |  |
| | Sander, Oliver | Jan | 2004 |  | | Local sequence-structure relationships in proteins
Friedrich-Alexander-Universität Erlangen-Nürnberg |  |
118 |
|  |