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#		Author/Editor	Month	Year			Title
36	Bachelor thesis
		Binsl, Thomas	Nov	2004			Implementation of a Generic Fragment Based Method for Automated Calculation of the Octanol-Water Partition Coefficient Universität des Saarlandes
		Djoumbou, Yannick	Dec	2005			Docking studies to investigate the effect of correlated mutations in the HIV-Protease on the drug resistance of HIV Universität des Saarlandes
		Döring, Matthias	Sep	2011			Web Implementation of the HBV Dual Infection Model Universität des Saarlandes
		Dörr, Barbara	Oct	2010			Using copy number variation fpr predicting susceptibility to glioblastoma Universität des Saarlandes
		Ebert, Peter	Oct	2009			Computational Analysis of genomic HPV data Universität des Saarlandes
		Eyrisch, Susanne	Mar	2004			Fun2Struc-A Tool For Predicting Protein Structure Classes from Function Predictions Universität des Saarlandes
		Frings, Oliver	Jan	2006			Development of a Smith-Waterman-Like Multi-Aspect Alignment Tool Universität des Saarlandes
		Galata, Valentina	Jun	2012			Applying Lasso regression to related cell types for gene network astimation Universität des Saarlandes
		Gatzmann, Fanny	Sep	2010			GOdot Sequence - function prediction from protein sequence Universität des Saarlandes
		Glaab, Enrico	Feb	2006			On the predictability of CpG methylation in human tissue at single basepair resolution Universität des Saarlandes
		Hobler, Anna	Jun	2006			Docking of monosaccharids into the wild type and mutants of pyranose 2-oxidase Universität des Saarlandes
		Immesberger, Stefan	Jan	2005			A Prefiltering Method to Speed up Protein Structure Prediction Universität des Saarlandes
		Junge, Alexander	Sep	2011			Unsupervised dissection of cancer types based on genomic, epigenomic and transciptomic features Universität des Saarlandes
		Jung, Holger	Dec	2006			Yamada Analyzer - A tool for fast calculation of genomic attributes Universität des Saarlandes
		Kacprowski, Tim	May	2010			Analysis of protein complexes and tissue-spedific expression Universität des Saarlandes
		Kaspar, Melanie	Jan	2005			Conformational Analysis of Macrocyclic Ring Systems Universität des Saarlandes
		Klingen, Thorsten	Mar	2012			Automatic Recombination Analysis Using Recoo and Mebitoo Universität des Saarlandes
		König, Eva	Jun	2010			Env-wide analysis of coreceptor determining sites and subtype-specific differences in HIV-1 Universität des Saarlandes
		Krier, Markus	Jun	2005			Motif Search in Protein Sequences for Protein Structure Prediction Universität des Saarlandes
		Mangels, Miriam	Feb	2009			In Silico Models for the Prediction of Metabolism by Cytochrome P450 Enzymes Universität des Saarlandes
		Meiser, Ina	Jul	2005			Identification of functionally important regions in cytochrome P450 systems and a systematic analysis of various CYP P450 homology models Universität des Saarlandes
		Müller, Fabian	Feb	2008			Inferring virological response to antiretroviral combination therapy based on past treatment lines Universität des Saarlandes
		Nickels, Stefan	Sep	2005			Generating Molecular Hashcodes for Finding Duplicates in Virtual Screening Libraries Universität des Saarlandes
		Perner, Juliane	Nov	2008			Semi-Supervised Learning for Predicting Anti-HIV Drug Resistance Universität des Saarlandes
		Pfeifer, Susanne	Sep	2006			Development of a fast geometry-based screening compound prefiltering technique Universität des Saarlandes
		Reimer, Daniela	Jun	2006			Docking studies to investigate the effect of correlated mutations in the HIV-Protease on the drug resistance of HIV Universität des Saarlandes
		Reuter, Kerstin	Sep	2011			Estimating and Using the Uncertainty in the Phenotypic Resistance Assay of the Hepatitis B Virus to Improve IC-50 Prediction from Genotype Universität des Saarlandes
		Schlicker, Andreas	Sep	2004			Automated Differential Analysis of Proteomes Universität des Saarlandes
		Speicher, Nora K.	Dec	2010			Network analysis of viral host factors Universität des Saarlandes
		Stöckel, Daniel	Nov	2008			Protein Surface Remeshing and Characterisation Using Morse-Smale Complexes Universität des Saarlandes
		Volkamer, Andrea	Apr	2005			Implementation of a method to filter out compounds with toxic, reactive and unsuitable functional groups Universität des Saarlandes
		Weimann, Aaron	May	2009			Using multidimensional Scaling for visualizing similarities of proteins Universität des Saarlandes
		Weiss, Julia	Jun	2005			Generating Frequency Profiles from Multiple Structure Alignments Universität des Saarlandes
		Yalak, Garif	Feb	2005			Analysis of Mutations in the Death Domains, Death Effector Domains, Caspase Recruitment Domains, and Pyrin Domains Universität des Saarlandes
		Zeidler, Michael	Sep	2012			Cloudbasierte Analyse von viralen Sequenzdaten der neuesten Generation Universität des Saarlandes
		Zimmer, Tobias	Jun	2006			Functional Site Scaffolds Universität des Saarlandes
54	Master's thesis
		Alexa, Adrian	Mar	2005			Integrating the GO graph structure in scoring the significance of Gene Ontology terms Universität des Saarlandes
		Assenov, Yassen	Nov	2006			Topological Analysis of Biological Networks Universität des Saarlandes
		Bader, Mathias	Oct	2012			Clustering epigenetic data using a Dirichlet process prior Universität des Saarlandes
		Bastys, Tomas	Nov	2012			MAP Kinase Docking Motifs in HIV Proteins Universität des Saarlandes
		Bayjanov, Jumamurat	Oct	2004			Scoring pathway activity from gene expression data Universität des Saarlandes
		Binsl, Thomas		2006			Feature Prints: A new method for calculating molecular similarities Universität des Saarlandes
		Bogojeska, Jasmina	Jan	2007			Stability analysis of oncogenetic trees mixture models Universität des Saarlandes
		Diehl, Sarah	Jun	2009			Analysis and reconstruction of protein complex topology Universität des Saarlandes
		Dietzen, Matthias	Aug	2007			An additive tree-based approach to the prediction of the strength of acidity for drug-like molecules Universität des Saarlandes
		Djoumbou, Yannick	Dec	2008			Molecular Dynamics based prediction of HIV-1 drug resistance Universität des Saarlandes
		Doncheva, Nadezhda, T.	Jul	2009			Analysis and visualization of residue interaction networks Universität des Saarlandes
		Eldarov, Nasimi	Sep	2012			Modeling influenza evolution in response to immune system pressure Universität des Saarlandes
		Feuerbach, Lars	Sep	2007			Towards Comparative Epigenomics: A Pilot Study on DNA Methylation of CpG Islands on Human Chromosome 21 Universität des Saarlandes
		Fischer, Sandra	Mar	2008			Structure-based prediction of HIV-1 drug resistance Universität des Saarlandes
		Guo, Xin	Jun	2006			Improving Fold Recognition Using Protein and Domain Interactions Universität des Saarlandes
		Gwinner, Frederik	Feb	2009			Assessing the Conservation of Protein Function on Evolutionary Defined Patches Universität des Saarlandes
		Haid, Carla	Sep	2007			BSIFlex: Binding Site Identification including protein flexibility Universität des Saarlandes
		Halachev, Konstantin	Sep	2006			EpiGRAPHregression: A toolkit for (epi-)genomic correlation analysis and prediction of quantitative attributes Universität des Saarlandes
		Hauschild, Anne-Christin		2011			Modeling HIV Neutralization Universität des Saarlandes
		Hoinka, Jan-Malte	Feb	2011			Finding the Hairpin in the Haystack: Towards an High Throughput in Silico Pipeline for Aptamer Motif Identification using SELEX Data Universität des Saarlandes
		Ifrim, Georgiana	May	2005			A Bayesian Learning Approach to Concept-Based Document Classification Universität des Saarlandes
		Ivanova, Violeta		2011			Comparison of methods for discovering genomic aberrations relevant for cancer Universität des Saarlandes
		Jing, Cui		2011			A comprehensive analysis of the illumina Infinium assay Universität des Saarlandes
		Kacprowski, Tim	Dec	2011			Disease gene prioritization by combining network information and functional knowledge Universität des Saarlandes
		Kalaghatgi, Prabhav	Jun	2012			A Phylodynamic Study of HIV Transmission Networks in Europe Universität des Saarlandes
		Kaspar, Melanie	Jul	2006			Automated conformational analysis of macrocyclic ring systems Universität des Saarlandes
		Kircher, Martin	May	2007			In silico analysis of microRNA genes on human chromosome 14 and mouse chromosome 12 Universität des Saarlandes
		König, Eva	Jul	2012			Automatic detection of loss of heterozygosity in cancer Universität des Saarlandes
		Korbel, Ulli S.	May	2007			Identification of Symmetries in Molecules and Complexes Universität des Saarlandes
		Koser, Sandra	Mar	2012			Reconstructing anecestral methylation states in phylogenetic trees Universität des Saarlandes
		Kuhn Cuellar, Luis Eugenio	May	2010			A probabilistic algorithm for matching protein structures - and its application to detecting functionally relevant patterns Universität des Saarlandes
		Loi, Luu Phuc	Aug	2010			Identifying discriminative motifs for molecular function of proteins Universität des Saarlandes
		Lutsik, Pavlo	Apr	2010			Processing of high-throughput DNA methylation data Universität des Saarlandes
		Müller, Fabian	Jul	2009			Assessing Antibody Neutralization of HIV-1 as an Initial Step in the Search for gp160-based Immunogens Universität des Saarlandes
		Müller, Joachim	May	2012			Extracting pathways from biological networks incorporating omics data, introducing a webinterface for KeyPathwayMiner Universität des Saarlandes
		Müller, Oliver	Sep	2007			Using Shape Retrieval Techniques for Identifying Similar Protein Binding Sites Universität des Saarlandes
		Perner, Juliane	Nov	2010			Finding local similarities in gene expression patterns between partially reprogrammed cells and know cell types using a module network approach Universität des Saarlandes
		Pironti, Alejandro	Jul	2009			Probabilistic disease gene prioritization Universität des Saarlandes
		Ramírez, Fidel		2004			Hacia una comprension de la accion de la recombinacion genetica y la mutacion en el origen de la variacion fenotipica, mediante el analisis de la computacion evolutiva Universidad Nacional de Colombia
		Schelhorn, Sven-Eric	Jun	2007			Prediction of Domain and Motif Interactions from Protein Networks Universität des Saarlandes
		Schlicker, Andreas	Aug	2005			A Global Approach to Comparative Genomics: Comparison of Functional Annotation over the Taxonomic Tree Universität des Saarlandes
		Schüffler, Peter	Apr	2008			MethMarker – A toolkit for design, optimization and validation of DNA methylation biomarkers for cancer diagnosis and therapy optimization Universität des Saarlandes
		Sing, Tobias	Apr	2004			Learning localized rule mixtures by maximizing the area under the ROC curve, with an application to the prediction of HIV-1 coreceptor usage Universität Freiburg
		Siu, Shirley Weng-In	Sep	2005			Computational prediction of MHC-peptide interactions Universität des Saarlandes
		Speicher, Nora	Dec	2012			Towards the identification of cancer subtypes by integrative clustering of molecular data Universität des Saarlandes
		Stöckel, Daniel	Apr	2010			History Based HIV Therapy Outcome Prediction Universität des Saarlandes
		Thielen, Alexander	Mar	2006			Prediction of linear B-cell epitopes and MHC class II binding peptides Eberhardt-Karls-Universität Tübingen
		Tolosi, Laura	Jun	2006			Analysis of Array CGH Data for the Estimation of Genetic Tumor Progression Universität des Saarlandes
		Trajkovski, Igor	Sep	2004			Analysis of protein binding pocket flexibility Universität des Saarlandes
		Volkamer, Andrea	Aug	2007			Automated generation of pharmacophore type constraints to improve FlexX docking Universität des Saarlandes
		Weimann, Aaron		2011			Functional Profiling in Metagenomics Universität des Saarlandes
		Weinhold, Nils	Dec	2006			Inference of Protein Function based on Functionally Conserved Regions in Sequence and Structure Space Universität des Saarlandes
		Weisser, Hendrik	Sep	2007			Estimating the local variance of protein structure models Universität des Saarlandes
		Yin, Junming	Mar	2005			Model Selection for Mixtures of Mutagenetic Trees Universität des Saarlandes
21	Doctoral dissertation
		Albrecht, Mario	Feb	2006			Combining protein structure prediction with experiments and functional information Universität des Saarlandes
		Altmann, André	Mar	2010			Bioinformatical approaches to ranking of anti-HIV combination therapies and planning of treatment schedules Universität des Saarlandes
		Beerenwinkel, Niko	Dec	2003			Computational Analysis of HIV Drug Resistance Data Universität des Saarlandes
		Bock, Christoph	Oct	2008			Computational Epigenetics - Bioinformatic methods for epigenome prediction, DNA methylation mapping and cancer epigenetics Universität des Saarlandes
		Bogojeska, Jasmina	Dec	2011			Statistical Learning Methods for Bias-aware HIV Therapy Screening Universität des Saarlandes
		Bozek, Katarzyna	Dec	2011			Analysis of HIV-host interaction on different scales. Universität des Saarlandes
		Emig, Dorothea	Feb	2011			Novel analysis approaches to context-dependent molecular networks Universität des Saarlandes
		Hartmann, Christoph	Jul	2008			Modeling of Flexible Side Chains for Protein-Ligand Docking Universität des Saarlandes
		Johannsen, Daniel	Apr	2010			Random Combinatorial Structures and Randomized Search Heuristics Universität des Saarlandes
		Kunert, Lars		2011			Maximal Common Subgraph DAGs: Theory and Application to Virtual Screening in Drug Development Universität des Saarlandes
		Maydt, Jochen	Dec	2008			Analysis of recombination in Molecular Sequence Data Universität des Saarlandes
		Patil, Kaustubh Raosaheb	Jan	2013			Genome Signature based Sequence Comparison for Taxonomic Assignment and tree inference Universität des Saarlandes
		Ramirez, Fidel	Apr	2012			Novel Approaches to the Integration and Analysis of Systems Biology Universität des Saarlandes
		Sander, Oliver	Dec	2008			Structural Descriptors for the Analysis of Protein Structure, Function, and Evolution Universität des Saarlandes
		Schlicker, Andreas	Nov	2010			Ontology-based Similarity Measures and their Application in Bioinformatics Universität des Saarlandes
		Sing, Tobias	Apr	2008			Model-Based Anti HIV Therapy Universität des Saarlandes
		Steffen, Andreas	Jan	2008			Computational Approaches in Supramolecular Chemistry with a special Focus on Virtual Screening Universität des Saarlandes
		Talwar, Priti	Nov	2008			Development of Computational Methods for Metabolic Network Analysis based on Metabolomics Data Universität des Saarlandes
		Thielen, Alexander	Jun	2011			Genotypic Analysis of HIV-1 Coreceptor Usage Universität des Saarlandes
		Tolosi, Laura	Sep	2012			Finding Regions of Aberrant DNA Copy Number Associated With Tumor Phenotype Universität des Saarlandes
		Zhu, Hongbo	Jun	2010			Characterization, classification and alignment of protein-protein interfaces Universität des Saarlandes
3	Habilitation thesis
		Antes, Iris	Feb	2009			Computational Methods for the Investigation of Protein-Ligand Interactions Universität des Saarlandes
		Rahnenführer, Jörg	Oct	2006			Statistical methods for the biological interpretation of genome-wide measurements Universität des Saarlandes
		Sommer, Ingolf	Sep	2009			From Protein Structure to Function Universität des Saarlandes
4	Diploma thesis
		Blankenburg, Hagen	Mar	2007			A Distributed Annotation System for Molecular Interactions Ruprecht Karl Universität Heidelberg; Universität Heilbronn
		Emig, Dorothea	Mar	2007			The Impact of Alternative Splicing on Protein Interaction Networks Eberhard Karls Universität Tübingen
		Huthmacher, Carola	May	2006			Decomposing Protein Networks Into Domain-Domain Interactions Eberhard Karls University Tübingen
		Sander, Oliver	Jan	2004			Local sequence-structure relationships in proteins Friedrich-Alexander-Universität Erlangen-Nürnberg
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