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MPI-INF D3 Publications

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Your search returned the following 48 documents:

  1. Predicting drug susceptibility of non-small cell lung cancers based on genetic lesions
    Martin L. Sos, Kathrin Michel, Thomas Zander, Jonathan Weiss, Peter Frommolt, Martin Pfeifer, Danan Li, Roland Ullrich, Mirjam Koker, Florian Fischer, Takeshi Shimamura, Daniel Rauh, Craig Mermel, Stefanie Fischer, Isabel Stückrath, Stefanie Heynck, Rameen Beroukhim, William Lin, Wendy Winckler, Kinjal Shah, Thomas LaFramboise, Whei F. Moriarty, megan Hanna, Laura Tolosi, Jörg Rahnenführer, Roel Verhaak, Derek Chiang, Gad Getz, Martin Hellmich, Jürgen Wolf, Luc Girard, Michael Peyton, Barbara A. Weir, Tzu-Hsiu Chen, Heidi Greulich, Jordi Barretina, Geoffrey I. Shapiro, Levi A. Garraway, Adi F. Gazdar, John D. Minna, Matthew Meyerson, Kwok-Kin Wong, and Roman K. Thomas
    Journal of Clinical Investigation 119 (6): 1727-1740, 2009
  2. Protein phosphatase and TRAIL receptor genes as new candidate tumor genes on chromosome 8p in prostate cancer
    Max Hornstein, Michele J. Hoffmann, Adrian Alexa, Masanori Yamanaka, Mirko Müller, Volker Jung, Jörg Rahnenführer, and Wolfgang A. Schulz
    Cancer Genomics & Proteomics 5 (2): 123-136, 2008
  3. Rtreemix: an R package for estimating evolutionary pathways and genetic progression scores
    Jasmina Bogojeska, Adrian Alexa, André Altmann, Thomas Lengauer, and Jörg Rahnenführer
    Bioinformatics 24 (20): 2391-2392, 2008

  4. Stability analysis of mixtures of mutagenetic trees
    Jasmina Bogojeska, Thomas Lengauer, and Jörg Rahnenführer
    BMC Bioinformatics 9 (1): 165-181, 2008
  5. Analysis of Expression Data: Classification of genes
    Jörg Rahnenführer and Thomas Lengauer
    In: Bioinformatics - From Genomes to Therapies 2. Getting at the Inner Workings: Molecular Interactions, 2007, 993-1021
  6. Application of oncogenetic trees mixtures as a biostatistical model of the clonal cytogenetic evolution of meningiomas
    Ralf Ketter, Steffi Urbschat, Wolfram Henn, Wolfgang Feiden, Niko Beerenwinkel, Thomas Lengauer, Wolf-Ingo Steudel, Klaus D. Zang, and Jörg Rahnenführer
    International Journal of Cancer 121 (7): 1473-1480, 2007
  7. Conformational analysis of alternative protein structures
    Francisco S. Domingues, Jörg Rahnenführer, and Thomas Lengauer
    Bioinformatics 23 (23): 3131-3138, 2007
  8. Detection of Novel Amplicons in Prostate Cancer by Comprehensive Genomic Profiling of Prostate Cancer Cell Lines Using Oligonucleotide-Based ArrayCGH
    Jörn Kamradt, Volker Jung, Kerstin Wahrheit, Laura Tolosi, Jörg Rahnenführer, Martin Schilling, Robert Walker, Sean Davis, Michael Stöckle, Paul Meltzer, and Bernd Wullich
    PLoS ONE 2 (8): e769 p., 2007
  9. Factor interaction analysis for chromosome 8 and DNA methylation alterations highlights innate immune response suppression and cytoskeletal changes in prostate cancer
    Wolfgang A. Schulz, Adrian Alexa, Volker Jung, Christiane Hader, Michele J. Hoffmann, Masanori Yamanaka, Sandy Fritzsche, Agnes Wlazlinski, Mirko Müller, Thomas Lengauer, Rainer Engers, Andrea R. Florl, Bernd Wullich, and Jörg Rahnenführer
    Molecular Cancer 6: 1-16, 2007
    [PDF: Download: Rahnenfuehrer2007c.pdf]
  10. Hyperdiploidy defines a distinct cytogenetic entity of meningiomas
    Ralf Ketter, Yoo-Jin Kim, Simone Storck, Jörg Rahnenführer, Bernd F.M. Romeike, Wolf-Ingo Steudel, Klaus D. Zang, and Wolfram Henn
    Journal of Neuro-Oncology 83 (2): 213-221, 2007

  11. GOTax: investigating biological processes and biochemical activities along the taxonomic tree
    Andreas Schlicker, Jörg Rahnenführer, Mario Albrecht, Thomas Lengauer, and Francisco S. Domingues
    Genome Biology 8 (3): R33.1-10, 2007
    [PDF: Download: Schlicker2007.pdf]
  12. A new measure for functional similarity of gene products based on Gene Ontology
    Andreas Schlicker, Francisco S. Domingues, Jörg Rahnenführer, and Thomas Lengauer
    BMC Bioinformatics 7: 1-16, 2006
    [PDF: Download: Schlicker_BMCBioinformatics_2006.pdf]
  13. Improved Scoring of Functional Groups from Gene Expression Data by Decorrelating GO Graph Structure
    Adrian Alexa, Jörg Rahnenführer, and Thomas Lengauer
    Bioinformatics 22 (13): 1600-1607, 2006

  14. Model Selection for Mixtures of Mutagenetic Trees
    Junming Yin, Niko Beerenwinkel, Jörg Rahnenführer, and Thomas Lengauer
    Statistical Applications in Genetics and Molecular Biology 5 (1): Article 17 p., 2006

  15. Statistical methods for the biological interpretation of genome-wide measurements
    Jörg Rahnenführer
    Habilitation thesis, Universität des Saarlandes, 2006
  16. Clustering algorithms and other exploratory methods for microarray data analysis
    Jörg Rahnenführer
    Methods of Information in Medicine 44 (3): 444-448, 2005
  17. Computational methods for the design of effective therapies against drug resistant HIV strains
    Niko Beerenwinkel, Tobias Sing, Thomas Lengauer, Jörg Rahnenführer, Kirsten Roomp, Igor Savenkov, Roman Fischer, Daniel Hoffmann, Joachim Selbig, Klaus Korn, Hauke Walter, Thomas Berg, Patrick Braun, Gerd Fätkenheuer, Mark Oette, Jürgen Rockstroh, Bernd Kupfer, Rolf Kaiser, and Martin Däumer
    Bioinformatics 21 (21): 3943-3950, 2005
  18. Computational Methods for Protein Function Prediction using Metabolomics Data
    Priti Talwar, Thomas Lengauer, Jörg Rahnenführer, Christoph Wittmann, VR Velagapudi, and Elmar Heinzle
    In: Proceedings of International Workshop on Systems Biology 2005, Milan, Italy., 2005, 1 p.
  19. Confirmation of human protein interaction data by human expression data
    Andreas Hahn, Jörg Rahnenführer, Priti Talwar, and Thomas Lengauer
    BMC Bioinformatics 6 (112): 1-11, 2005
  20. Estimating cancer survival and clinical outcome based on genetic tumor progression scores
    Jörg Rahnenführer, Niko Beerenwinkel, Wolfgang A. Schulz, Christian Hartmann, Andreas von Deimling, Bernd Wullich, and Thomas Lengauer
    Bioinformatics 21 (10): 2438-2446, 2005
  21. Estimating HIV evolutionary pathways and the genetic barrier to drug resistance
    Niko Beerenwinkel, Martin Däumer, Tobias Sing, Jörg Rahnenführer, Thomas Lengauer, Joachim Selbig, Daniel Hoffmann, and Rolf Kaiser
    The Journal of Infectious Diseases 191 (11): 1953-1960, 2005
  22. Image analysis for cDNA microarrays
    Jörg Rahnenführer
    Methods of Information in Medicine 44 (3): 405-407, 2005
  23. Learning multiple evolutionary pathways from cross-sectional data
    Niko Beerenwinkel, Jörg Rahnenführer, Martin Däumer, Daniel Hoffmann, Rolf Kaiser, Joachim Selbig, and Thomas Lengauer
    Journal of Computational Biology 12 (6): 584-598, 2005
  24. Mtreemix: a software package for learning and using mixture models of mutagenetic trees
    Niko Beerenwinkel, Jörg Rahnenführer, Rolf Kaiser, Daniel Hoffmann, Joachim Selbig, and Thomas Lengauer
    Bioinformatics 21 (9): 2106-2107, 2005
  25. Patients with high grade gliomas harboring delections of chromosomes 9p and 10q benefit from temozolomide treatment
    Silke Wemmert, Ralf Ketter, Jörg Rahnenführer, Niko Beerenwinkel, Martin Strowitzki, Wolfgang Feiden, Christian Hartmann, Thomas Lengauer, Florian Stockhammer, Klaus D. Zang, Eckart Meese, Wolf-Ingo Steudel, Andreas von Deimling, and Steffi Urbschat
    Neoplasia 7 (10): 883-893, 2005

  26. Retinal properties and potential of the adult mammalian ciliary epithelium stem cells
    Ani V. Das, Jackson James, Jörg Rahnenführer, Wallace B. Thoresona, Sumitra Bhattacharyaa, Xing Zhao, and Iqbal Ahmad
    Vision Research 45 (13): 1653-1666, 2005
  27. Towards computational analysis of metabolic profiling data for protein function prediction.
    Priti Talwar, Thomas Lengauer, Jörg Rahnenführer, Elmar Heinzle, VR Velagapudi, and Christoph Wittmann
    In: Proceedings of the Yeast Systems Biology, 6th International Conference on Systems Biology (ICSB 2005), Boston, USA., 2005, 1 p.
  28. Automated clustering of ensembles of alternative models in protein structure databases
    Francisco S. Domingues, Jörg Rahnenführer, and Thomas Lengauer
    Protein Engineering Design and Selection 17 (6): 537-543, 2004
  29. Calculating the statistical significance of changes in pathway activity from gene expression data
    Jörg Rahnenführer, Francisco S. Domingues, Jochen Maydt, and Thomas Lengauer
    Statistical Applications in Genetics and Molecular Biology 3 (1): Article 16 p., 2004
  30. Cellular and Molecular Characterization of Early and Late Retinal Stem Cells/Progenitors: Differential Regulation of Proliferation and Context Dependent Role of Notch Signaling
    Jackson James, Ani V. Das, Jörg Rahnenführer, and Iqbal Ahmad
    Journal of Neurobiology 61 (3): 359-376, 2004
  31. Computational Methods For Metabolite Screening
    Priti Talwar, Thomas Lengauer, Jörg Rahnenführer, VR Velagapudi, Christoph Wittmann, and Elmar Heinzle
    In: Proceedings of the 12th International Conference on Intelligent Systems for Molecular Biology + 3rd European Conference on Computational Biology (ISMB/ECCB 2004), Glasgow, UK., 2004, 1 p.
  32. Computational Methods For Metabolite Screening
    Priti Talwar, Thomas Lengauer, Jörg Rahnenführer, VR Velagapudi, Christoph Wittmann, and Elmar Heinzle
    In: Proceedings of the 5th International Conference on Systems Biology (ICSB 2004), Heidelberg, Germany, 2004, 1 p.
  33. Hybrid clustering for microarray image analysis combining intensity and shape features
    Jörg Rahnenführer and Daniel Bozinov
    BMC Bioinformatics 5 (47): 1-11, 2004
  34. Identification of c-Kit receptor as a regulator of adult neural stem cells in the mammalian eye: interactions with Notch signaling
    Jackson James, Ani V. Das, Xing Zhao, Jörg Rahnenführer, and Iqbal Ahmad
    Developmental Biology 273 (1): 87-105, 2004
  35. Learning multiple evolutionary pathways from cross-sectional data
    Niko Beerenwinkel, Jörg Rahnenführer, Martin Däumer, Daniel Hoffmann, Rolf Kaiser, Joachim Selbig, and Thomas Lengauer
    In: RECOMB 2004 : proceedings of the Eighth Annual International Conference on Research in Computational Molecular Biology, San Diego, USA, March, 27-31, 2004, 36-44
  36. Predicting Protein Structure Classes from Function Predictions
    Ingolf Sommer, Jörg Rahnenführer, Francisco S. Domingues, Ulrik de Lichtenberg, and Thomas Lengauer
    Bioinformatics 20 (5): 770-776, 2004
  37. A hazard based approach to dependence tests for bivariate censored models
    A. Janssen and Jörg Rahnenführer
    Mathematical Methods in Statistics 11 (3): 297-322, 2003
  38. Comparative quality analyses for hybrid clustering of microarray images
    Jörg Rahnenführer and Daniel Bozinov
    In: Proceedings of the Sventh Annual International Conference on Computational Biology, Berlin, Germany, 2003, paper no. 142.
  39. Cost-effective screening for differentially expressed genes in microarray experiments based on normal mixtures
    Jörg Rahnenführer and Andreas Futschik
    Austrian Journal of Statistics 32 (3): 225-238, 2003
  40. Efficient Clustering Methods for Tumor Classification with Microarrays
    Jörg Rahnenführer
    In: Proceedings of the 26th Annual Conference of the Gesellschaft für Klassifikation, Mannheim, Germany, July 22-24, 2002, 2003, 670-679
  41. Identification of rat brahma (rBRM), a subunit of SWI/SNF chromatin remodeling complex: Involvement in the differentiation of retinal stem cells/progenitors
    Jackson James, Ani V. Das, Jörg Rahnenführer, FAS Leon, and Iqbal Ahmad
    Meeting abstract: Investigative Ophthalmology & Visual Science 44: U391-U391 1671 Suppl. 1, May 2003
  42. On preferences of general two-sided tests with applications to Kolmogorov-Smirnov-type tests
    Jörg Rahnenführer
    Statistics & Decisions 21 (2): 115-136, 2003
  43. Statistical Inference for Clustering Microarrays
    Jörg Rahnenführer
    In: Proceedings of the MSRI Workshop: Nonlinear Estimation and Classification, Berkleley, USA, March 19-29, 2001, 2003, 323-332
  44. Tree models for the evolution of drug resistance
    Niko Beerenwinkel, Rolf Kaiser, Jörg Rahnenführer, Martin Däumer, Daniel Hoffmann, Joachim Selbig, and Thomas Lengauer
    In: XII International HIV Drug resistance Workshop, Los Cabos, Mexico, June 10 - June 14, 2003, S107-S107
  45. Automated Grid Alignment for High-Throughput Analysis of Microarray Images (CIIST-02)
    Daniel Bozinov, Jörg Rahnenführer, Cathy Burson, and Ofer Spiegelstein
    In: Proceedings of the 2002 International Conference on Imaging Science, Systems, and Technology, Las Vegas, USA, 2002, 161-167
  46. Hybrid clustering for microarray analysis combining intensity and shape features
    Jörg Rahnenführer
    In: Poster book of the European Conference on Computational Biology, Saarbrücken, Germany 2002, Saarbrücken, October, 6-9, 2002
  47. Multivariate permutation tests for the k-sample problem with clustered data
    Jörg Rahnenführer
    Computational Statistics 17 (2): 165-184, 2002
  48. Unsupervised technique for robust target separation and analysis of DNA microarray spots through adaptive pixel clustering
    Jörg Rahnenführer and Daniel Bozinov
    Bioinformatics 18 (5): 747-756, 2002