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MPI-INF D3 Publications

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Your search returned the following 7 documents:

  1. Improved detection of CXCR4-using HIV by V3 genotyping: application of population-based and "deep" sequencing to plasma RNA and proviral DNA
    Luke C. Swenson, Andrew Moores, Andrew J. Low, Alexander Thielen, Winnie Dong, Conan Woods, Mark A. Jensen, Brian Wynhoven, Dennison Chan, Christopher Glascock, and P. Richard Harrigan
    Journal of Acquired Immune Deficiency Syndromes 54 (5): 506-510, 2010
  2. Improved detection of X4 virus by V3 genotyping: application to plasma RNA and proviral DNA
    Andrew Moores, Alexander Thielen, Winnie Dong, Andrew J. Low, Conan Woods, Mark Jensen, Brian Wynhoven, Dennison Chan, Christopher Glascock, and P Richard Harrigan
    In: Antiviral Therapy, Sitges, Spain, 2008, A99 p.
  3. Improved genotypic prediction of HIV-1 coreceptor usage by incorporating V2 loop sequence variation
    Alexander Thielen, P Richard Harrigan, Andrew J. Low, A Moores, Andre Altmann, Kasia Bozek, Eva Heger, Nadine Sichtig, Rolf Kaiser, and Thomas Lengauer
    In: Antiviral Therapy, Sitges, Spain, 2008, A100 p.
  4. Current V3 genotyping algorithms are inadequate for predicting X4 co-receptor usage in clinical isolates
    Andrew J. Low, Winnie Dong, Dennison Chan, Tobias Sing, Ronald Swanstrom, Mark Jensen, Satish Pillai, Benjamin Good, and P. Richard Harrigan
    AIDS 21 (14): F19-F26, 2007
  5. Determining human immunodeficiency virus coreceptor use in a clinical setting: Degree of correlation between two phenotypic assays and a bioinformatic model
    Katharina Skrabal, Andrew J. Low, Winnie Dong, Tobias Sing, Peter K. Cheung, Fabrizio Mammano, and P. Richard Harrigan
    Journal of Clinical Microbiology 45 (2): 279-284, 2007

  6. Predicting HIV coreceptor usage on the basis of genetic and clinical covariates
    Tobias Sing, Andrew J. Low, Niko Beerenwinkel, Oliver Sander, Peter K. Cheung, Francisco S. Domingues, Joachim Büch, Martin Däumer, Rolf Kaiser, Thomas Lengauer, and P. Richard Harrigan
    Antiviral Therapy 12 (7): 1097-1106, 2007
  7. Structural Descriptors of gp120 V3 Loop for the Prediction of HIV-1 Coreceptor Usage
    Oliver Sander, Tobias Sing, Ingolf Sommer, Andrew J. Low, Peter K. Cheung, P. Richard Harrigan, Thomas Lengauer, and Francisco S. Domingues
    PLoS Computational Biology 3 (3): 555-564, 2007
    [PDF: Download: Sander.pdf]