| BibTeX cite key | Author/Editor | Year | | Title | Type |
|---|
| Adams2012 | Adams, David
Altucci, Lucia
Antonarakis, Stylianos E
Ballesteros, Juan
Beck, Stephan
Bird, Adrian
Bock, Christoph
Boehm, Bernhard
Campo, Elias
Caricasole, Andrea
Dahl, Fredrik
Dermitzakis, Emmanouil T
Enver, Tariq
Esteller, Manel
Estivill, Xavier
Ferguson-Smith, Anne
Fitzgibbon, Jude
Flicek, Paul
Giehl, Claudia
Graf, Thomas
Grosveld, Frank
Guigó, Roderic
Gut, Ivo
Helin, Kristian
Jarvius, Jonas
Küppers, Ralf
Lehrach, Hans
Lengauer, Thomas
Lernmark, Åke
Leslie, David
Loeffler, Markus
Macintyre, Elizabeth
Mai, Antonello
Martens, Joost H A
Minucci, Saverio
Ouwehand, Willem H
Pelicci, Pier Giuseppe
Pendeville, Hèléne
Porse, Bo
Rakyan, Vardhman
Reik, Wolf
Schrappe, Martin
Schübeler, Dirk
Seifert, Martin
Siebert, Reiner
Simmons, David
Soranzo, Nicole
Spicuglia, Salvatore
Stratton, Michael
Stunnenberg, Hendrik G
Tanay, Amos
Torrents, David
Valencia, Alfonso
Vellenga, Edo
Vingron, Martin
Walter, Jörn
Willcocks, Spike | 2012 | | BLUEPRINT to decode the epigenetic signature written in blood
In: Nature Biotechnology [30], 224-226 | Journal Article |
| Adolph03 | Olsen, Lars
Antony, Jens
Ryde, Ulf
Adolph, Hans-Werner
Hemmingsen, Lars | 2003 | | Lactam hydrolysis catalyzed by mononuclear metallo-beta-lactamases: a density functional study
In: Journal of Physical Chemistry / B [107], 2366-2375 | Journal Article |
| Albrecht2000 | Hoffmann, Daniel
Schnaible, Volker
Wefing, Stephan,
Albrecht, Mario
Hanisch, Daniel
Zimmer, Ralf | 2002 | | A new method for the fast solution of protein-3D-structures, combining experiments and bioinformatics
In: Coupling of Biological and Electronic Systems: Proceedings of the 2nd Caesarium, Bonn, 1-3 November 2000, 59-78 | Proceedings Article |
| Albrecht2002 | Albrecht, Mario
Hanisch, Daniel
Zimmer, Ralf
Lengauer, Thomas | 2002 |  | Improving fold recognition of protein threading by experimental distance constraints
In: In Silico Biology [2], 325-337 | Journal Article |
| Albrecht2003a | Albrecht, Mario
Domingues, Francisco S.
Schreiber, Stefan
Lengauer, Thomas | 2003 | | Identification of mammalian orthologs associates PYPAF5 with distinct functional roles
In: FEBS Letters [538], 173-177 | Journal Article |
| Albrecht2003b | Albrecht, Mario
Lengauer, Thomas | 2003 | | Pyranose oxidase identified as a member of the GMC oxidoreductase family
In: Bioinformatics [19], 1216-1220 | Journal Article |
| Albrecht2003c | Albrecht, Mario
Lengauer, Thomas
Schreiber, Stefan | 2003 | | Disease-associated variants in PYPAF1 and NOD2 result in similar alterations of conserved sequence
In: Bioinformatics [19], 2171-2175 | Journal Article |
| Albrecht2003d | Albrecht, Mario
Hoffmann, Daniel
Evert, Bernd O.
Schmitt, Ina
Wüllner, Ullrich
Lengauer, Thomas | 2003 | | Structural modeling of ataxin-3 reveals distant homology to adaptins
In: Proteins: Structure, Function, and Genetics [50], 355-370 | Journal Article |
| Albrecht2003e | Albrecht, Mario
Tosatto, Silvio C.E.
Lengauer, Thomas
Valle, Giorgio | 2003 | | Simple consensus procedures are effective and sufficient in secondary structure prediction
In: Protein Engineering [16], 459-462 | Journal Article |
| Albrecht2003f | Albrecht, Mario
Domingues, Francisco S.
Schreiber, Stefan
Lengauer, Thomas | 2003 | | Structural localization of disease-associated sequence variations in the NACHT and LRR domains of PYPAF1 and NOD2
In: FEBS Letters [554], 520-528 | Journal Article |
| Albrecht2004a | Albrecht, Mario
Lengauer, Thomas | 2004 | | Survey on the PABC recognition motif PAM2
In: Biochemical and Biophysical Research Communications [316], 129-138 | Journal Article |
| Albrecht2004b | Stoll, Monika
Corneliussen, Brit
Costello, Christine M.
Waetzig, Georg H.
Mellgard, Bjorn
Koch, W. Andreas
Rosenstiel, Philip
Albrecht, Mario
Croucher, Peter J.P.
Seegert, Dirk
Nikolaus, Susanna
Hampe, Jochen
Lengauer, Thomas
Pierrou, Stefan
Foelsch, Ulrich R.
Mathew, Christopher G.
Lagerstrom-Fermer, Maria
Schreiber, Stefan | 2004 | | Genetic variation in DLG5 is associated with inflammatory bowel disease
In: Nature Genetics [36], 376-380 | Journal Article |
| Albrecht2004c | Albrecht, Mario
Lengauer, Thomas | 2004 | | Novel Sm-like proteins with long C-terminal tails and associated methyltransferases
In: FEBS Letters [569], 18-26 | Journal Article |
| Albrecht2004d | Albrecht, Mario
Golatta, Michael
Wüllner, Ullrich
Lengauer, Thomas | 2004 | | Structural and functional analysis of ataxin-2 and ataxin-3
In: European Journal of Biochemistry [271], 3155-3170 | Journal Article |
| Albrecht2005a | Albrecht, Mario
Choubey, Divaker
Lengauer, Thomas | 2005 | | The HIN domain of IFI-200 proteins consists of two OB folds
In: Biochemical and Biophysical Research Communications [327], 679-687 | Journal Article |
| Albrecht2005b | Ralser, Markus
Albrecht, Mario
Nonhoff, Ute
Lengauer, Thomas
Lehrach, Hans
Krobitsch, Sylvia | 2005 | | An integrative approach to gain insights into the cellular function of human ataxin-2
In: Journal of Molecular Biology [346], 203-214 | Journal Article |
| Albrecht2005c | Valentonyte, Ruta
Hampe, Jochen
Huse, Klaus
Rosenstiel, Philip
Albrecht, Mario
Stenzel, Annette
Nagy, Marion
Gaede, Karoline I.
Franke, Andre
Haesler, Robert
Koch, Andreas
Lengauer, Thomas
Seegert, Dirk
Reiling, Norbert
Ehlers, Stefan
Schwinger, Eberhard
Platzer, Mathias
Krawczak, Michael
Müller-Quernheim, Joachim
Schürmann, Manfred
Schreiber, Stefan | 2005 | | Sarcoidosis is associated with a truncating splice site mutation in BTNL2
In: Nature Genetics [37], 357-364 | Journal Article |
| Albrecht2005d | Albrecht, Mario | 2005 | | LRRK2 mutations and parkinsonism
In: The Lancet [365], 1230 | Journal Article |
| Albrecht2005e | Van Duist, Marjan M.
Albrecht, Mario
Podswiadek, Marta
Giachino, Daniela
Lengauer, Thomas
Punzi, Leonardo
De Marchi, Mario | 2005 | | A new CARD15 mutation in Blau syndrome
In: European Journal of Human Genetics [13], 742-747 | Journal Article |
| Albrecht2005f | Schreiber, Stefan
Rosenstiel, Philip
Albrecht, Mario
Hampe, Jochen
Krawczak, Michael | 2005 | | Genetics of Crohn disease, an archetypal inflammatory barrier disease
In: Nature Reviews Genetics [6], 376-388 | Journal Article |
| Albrecht2005g | Sarrazin, Christoph
Mihm, Ulrike
Herrmann, Eva
Welsch, Christoph
Albrecht, Mario
Sarrazin, Ulrike
Traver, Stella
Lengauer, Thomas
Zeuzem, Stefan | 2005 | | Clinical significance of in vitro replication-enhancing mutations of the hepatitis C virus (HCV) replicon in patients with chronic HCV infection
In: The Journal of Infectious Diseases [192], 1710-1719 | Journal Article |
| Albrecht2005h | Costello, Christine M.
Mah, Nancy
Häsler, Robert
Rosenstiel, Philip
Waetzig, Georg H.
Hahn, Andreas
Lu, Tim
Gurbuz, Yesim
Nikolaus, Susanna
Albrecht, Mario
Hampe, Jochen
Lucius, Ralph
Klöppel, Günther
Eickhoff, Holger
Lehrach, Hans
Lengauer, Thomas
Schreiber, Stefan | 2005 | | Dissection of the inflammatory bowel disease transcriptome using genome-wide cDNA microarrays identifies novel candidate disease genes
In: PLoS Medicine [2], 771-787 | Journal Article |
| Albrecht2005i | Ralser, Markus
Nonhoff, Ute
Albrecht, Mario
Lengauer, Thomas
Wanker, Erich E.
Lehrach, Hans
Krobitsch, Sylvia | 2005 | | Ataxin-2 and huntingtin interact with endophilin-A complexes to function in plastin-associated pathways
In: Human Molecular Genetics [14], 2893-2909 | Journal Article |
| Albrecht2005j | Albrecht, Mario
Huthmacher, Carola
Tosatto, Silvio C.E.
Lengauer, Thomas | 2005 | | Decomposing protein networks into domain-domain interactions
In: Bioinformatics [21], ii220-ii221 | Journal Article |
| Albrecht2005l | Castellano, Sergi
Lobanov, Alexey V.
Chapple, Charles
Novoselov, Sergey V.
Albrecht, Mario
Hua, Deame
Lescure, Alain
Lengauer, Thomas
Krol, Alain
Gladyshev, Vadim N.
Guigó, Roderic | 2005 | | Diversity and functional plasticity of eukaryotic selenoproteins: Identification and characterization of the SelJ family
In: Proceedings of the National Academy of Sciences [102], 16188-16193 | Journal Article |
| Albrecht2006a | Albrecht, Mario
Takken, Frank L. W. | 2006 | | Update on the domain architectures of NLRs and R proteins
In: Biochemical and Biophysical Research Communications [339], 459-462 | Journal Article |
| Albrecht2006b | Tameling, Wladimir I.
Vossen, Jack H.
Albrecht, Mario
Lengauer, Thomas
Berden, Jan A.
Haring, Michel A.
Cornelissen, Ben J.C.
Takken, Frank L. W. | 2006 | | Mutations in the NB-ARC domain of I-2 that impair ATP hydrolysis cause autoactivation
In: Plant Physiology [140], 1233-1245 | Journal Article |
| Albrecht2006c | Takken, Frank L. W.
Albrecht, Mario
Tameling, Wladimir I. | 2006 | | Resistance proteins: molecular switches of plant defence
In: Current Opinion in Plant Biology [9], 383-390 | Journal Article |
| Albrecht2006d | Mihm, Ulrike
Grigorian, Natalia
Welsch, Christoph
Herrmann, Eva
Kronenberger, Bernd
Teuber, Gerlinde
von Wagner, Michael
Hofmann, Wolf-Peter
Albrecht, Mario
Lengauer, Thomas
Zeuzem, Stefan
Sarrazin, Christoph | 2006 | | Amino acid variations in hepatitis C virus p7 and sensitivity to antiviral combination therapy with amantadine in chronic hepatitis C
In: Antiviral Therapy [11], 507-519 | Journal Article |
| Albrecht2006e | Boeddrich, Annett
Gaumer, Sébastien
Haacke, Annette
Tzvetkov, Nikolay
Albrecht, Mario
Evert, Bernd O.
Müller, Eva C.
Lurz, Rudi
Breuer, Peter
Schugardt, Nancy
Plaßmann, Stephanie
Xu, Kexiang
Warrick, John M.
Suopanki, Jaana
Wüllner, Ullrich
Frank, Ronald
Hartl, Ulrich F.
Bonini, Nancy M.
Wanker, Erich E. | 2006 | | An arginine/lysine-rich motif is crucial for VCP/p97-mediated modulation of ataxin-3 fibrillogenesis
In: EMBO Journal [25], 1547-1558 | Journal Article |
| Albrecht2006f | Plotz, Guido
Welsch, Christoph
Giron-Monzon, Luis
Friedhoff, Peter
Albrecht, Mario
Piiper, Albrecht
Biondi, Ricardo M.
Lengauer, Thomas
Zeuzem, Stefan
Raedle, Jochen | 2006 | | Mutations in the MutSalpha interaction interface of MLH1 can abolish DNA mismatch repair
In: Nucleic Acids Research [34], 6574-6586 | Journal Article |
| Albrecht2006g | Salamat-Miller, Nazila
Fang, Jianwen
Seidel, Christopher W.
Smalter, Aaron M.
Assenov, Yassen
Albrecht, Mario
Middaugh, C. Russell | 2006 | | A network-based analysis of polyanion-binding proteins utilizing yeast protein arrays
In: Molecular and Cellular Proteomics [5], 2263-2278 | Journal Article |
| Albrecht2006h | Schlicker, Andreas
Huthmacher, Carola
Ramírez, Fidel
Lengauer, Thomas
Albrecht, Mario | 2006 | | Functional evaluation of domain-domain interactions and human protein interaction networks
In: German Conference on Bioinformatics (GCB 2006), 115-126 | Proceedings Article |
| Albrecht2006i | Albrecht, Mario | 2006 | | Combining protein structure prediction with experiments and functional information
Universität des Saarlandes | Thesis - PhD thesis |
| Albrecht2007a | Hampe, Jochen
Franke, Andre
Rosenstiel, Philip
Till, Andreas
Teuber, Markus
Huse, Klaus
Albrecht, Mario
Mayr, Gabriele
De La Vega, Francisco M.
Briggs, Jason
Günther, Simone
Prescott, Natalie J.
Onnie, Clive M.
Häsler, Robert
Sipos, Bence
Fölsch, Ulrich R.
Lengauer, Thomas
Platzer, Matthias
Mathew, Christopher G.
Krawczak, Michael
Schreiber, Stefan | 2007 | | A genome-wide association scan of nonsynonymous SNPs identifies a susceptibility variant for Crohn disease in ATG16L1
In: Nature Genetics [39], 207-211 | Journal Article |
| Albrecht2007b | Salamat-Miller, Nazila
Fang, Jianwen
Seidel, Christopher W.
Assenov, Yassen
Albrecht, Mario
Middaugh, C. Russell | 2007 | | A network-based analysis of polyanion-binding proteins utilizing human protein arrays
In: Journal of Biological Chemistry [282], 10153-10163 | Journal Article |
| Albrecht2007c | Tress, Michael L.
Martelli, Pier L.
Frankish, Adam
Reeves, Gabrielle A.
Wesselink, Jan J.
Yeats, Corin
Ólason, Páll Í.
Albrecht, Mario
Hegyi, Hedi
Giorgetti, Alejandro
Raimondo, Domenico
Lagarde, Julien
Laskowski, Roman A.
López, Gonzalo
Sadowski, Michael I.
Watson, James D.
Fariselli, Piero
Rossi, Ivan
Nagy, Alinda
Kai, Wang
Størling, Zenia
Orsini, Massimiliano
Assenov, Yassen
Blankenburg, Hagen
Huthmacher, Carola
Ramírez, Fidel
Schlicker, Andreas
Denoued, France
Jones, Phil
Kerrien, Samuel
Orchard, Sandra
Antonarakis, Stylianos E.
Reymond, Alexandre
Birney, Ewan
Brunak, Søren
Casadio, Rita
Guigo, Roderic
Harrow, Jennifer
Hermjakob, Henning
Jones, David T.
Lengauer, Thomas
Orengo, Christine A.
Patthy, László
Thornton, Janet M.
Tramontano, Anna
Valencia, Alfonso | 2007 | | The implications of alternative splicing in the ENCODE protein complement
In: Proceedings of the National Academy of Sciences [104], 5495-5500 | Journal Article |
| Albrecht2007e | Ramírez, Fidel
Schlicker, Andreas
Assenov, Yassen
Lengauer, Thomas
Albrecht, Mario | 2007 | | Computational analysis of human protein interaction networks
In: Proteomics [7], 2541-2552 | Journal Article |
| Albrecht2007g | Schlicker, Andreas
Huthmacher, Carola
Ramírez, Fidel
Lengauer, Thomas
Albrecht, Mario | 2007 | | Functional evaluation of domain-domain interactions and human protein interaction networks
In: Bioinformatics [23], 859-865 | Journal Article |
| Albrecht2007h | Franke, Andre
Hampe, Jochen
Rosenstiel, Philip
Becker, Christoph
Wagner, Florian
Häsler, Robert
Little, Randall D.
Huse, Klaus
Ruether, Andreas
Balschun, Tobias
Wittig, Michael
ElSharawy, Abdou
Mayr, Gabriele
Albrecht, Mario
Prescott, Natalie J.
Onnie, Clive M.
Fournier, Hélène
Keith, Tim
Radelof, Uwe
Platzer, Matthias
Mathew, Christopher G.
Stoll, Monika
Krawczak, Michael
Nürnberg, Peter
Schreiber, Stefan | 2007 | | Systematic association mapping identifies NELL1 as a novel IBD disease gene
In: PLoS ONE [2], e691.1-13 | Journal Article |
| Albrecht2007i | Söderhäll, Cilla
Marenholz, Ingo
Kerscher, Tamara
Rüschendorf, Franz
Esparza-Gordillo, Jorge
Worm, Margitta
Gruber, Christoph
Mayr, Gabriele
Albrecht, Mario
Rohde, Klaus
Schulz, Herbert
Wahn, Ulrich
Hubner, Norbert
Lee, Young-Ae | 2007 | | Variants in a novel epidermal collagen gene (COL29A1) are associated with atopic dermatitis
In: PLoS Biology [5], e242.1952-1961 | Journal Article |
| Albrecht2007j | Scheller, Nicoletta
Resa-Infante, Patricia
de la Luna, Susana
Galao, Rui Pedro
Albrecht, Mario
Kaestner, Lars
Lipp, Peter
Lengauer, Thomas
Meyerhans, Andreas
Díez, Juana | 2007 | | Identification of PatL1, a human homolog to yeast P body component Pat1
In: Biochimica et Biophysica Acta - Molecular Cell Research [1773], 1786-1792 | Journal Article |
| Albrecht2008a | Schlicker, Andreas
Albrecht, Mario | 2008 | | FunSimMat: a comprehensive functional similarity database
In: Nucleic Acids Research [36], D434-D439 | Journal Article |
| Albrecht2008b | Assenov, Yassen
Ramírez, Fidel
Schelhorn, Sven-Eric
Lengauer, Thomas
Albrecht, Mario | 2008 | | Computing topological parameters of biological networks
In: Bioinformatics [24], 282-284 | Journal Article |
| Albrecht2008c | Welsch, Christoph
Domingues, Francisco S.
Susser, Simone
Antes, Iris
Hartmann, Christoph
Mayr, Gabriele
Schlicker, Andreas
Sarrazin, Christoph
Albrecht, Mario
Zeuzem, Stefan
Lengauer, Thomas | 2008 | | Molecular basis of telaprevir resistance due to V36 and T54 mutations in the NS3-4A protease of HCV
In: Genome Biology [9], R16 | Journal Article |
| Albrecht2008d | Van Ooijen, Gerben
Mayr, Gabriele
Kasiem, Mobien M. A.
Albrecht, Mario
Cornelissen, Ben J. C.
Takken, Frank L. W. | 2008 | | Structure-function analysis of the NB-ARC domain of plant disease resistance proteins
In: Journal of Experimental Botany [59], 1383-1397 | Journal Article |
| Albrecht2008e | Van Ooijen, Gerben
Mayr, Gabriele
Albrecht, Mario
Cornelissen, Ben J. C.
Takken, Frank L. W. | 2008 | | Transcomplementation, but not physical association of the CC-NB-ARC and LRR domains of tomato R protein Mi-1.2 is altered by mutations in the ARC2 subdomain
In: Molecular Plant [1], 401-410 | Journal Article |
| Albrecht2008f | Jenkinson, Andrew M.
Albrecht, Mario
Birney, Ewan
Blankenburg, Hagen
Down, Thomas
Finn, Robert D.
Hermjakob, Henning
Hubbard, Tim J. P.
Jimenez, Rafael C.
Jones, Philip
Kähäri, Andreas
Kulesha, Eugene
Macías, José R.
Reeves, Gabrielle A.
Prlić, Andreas | 2008 | | Integrating biological data - the Distributed Annotation System
In: BMC Bioinformatics [9], S3.1-7 | Journal Article |
| Albrecht2008g | Emig, Dorothea
Klein, Karsten
Kunert, Anne
Mutzel, Petra
Albrecht, Mario | 2008 | | Visualizing domain interaction networks and the impact of alternative splicing events
In: Proceedings of the 5th International Conference on BioMedical Visualization (MediVis): Information Visualization in Medical and Biomedical Informatics, 36-43 | Proceedings Article |
| Albrecht2008h | Emig, Dorothea
Cline, Melissa S.
Klein, Karsten
Kunert, Anne
Mutzel, Petra
Lengauer, Thomas
Albrecht, Mario | 2008 | | Integrative visual analysis of the effects of alternative splicing on protein domain interaction networks
In: Journal of Integrative Bioinformatics [5], 101-115 | Journal Article |
| Albrecht2008i | Franke, Andre
Balschun, Tobias
Karlsen, Tom H.
Sventoraityte, Jurgita
Nikolaus, Susanna
Mayr, Gabriele
Domingues, Francisco S.
Albrecht, Mario
Nothnagel, Michael
Ellinghaus, David
Sina, Christian
Onnie, Clive M.
Weersma, Rinse K.
Stokkers, Pieter C. F.
Wijmenga, Cisca
Gazouli, Maria
Strachan, David
McArdle, Wendy L.
Vermeire, Séverine
Rutgeers, Paul
Rosenstiel, Philip
Krawczak, Michael
Vatn, Morten H.
IBSEN study group, the
Mathew, Christopher G.
Schreiber, Stefan | 2008 | | Sequence variants in IL10, ARPC2, and multiple other loci contribute to ulcerative colitis
In: Nature Genetics [40], 1319-1323 | Journal Article |
| Albrecht2008j | Emig, Dorothea
Cline, Melissa S.
Lengauer, Thomas
Albrecht, Mario | 2008 | | Integrating expression data with domain interaction networks
In: Bioinformatics [24], 2546-2548 | Journal Article |
| Albrecht2008k | Frishman, Dmitrij
Albrecht, Mario
Blankenburg, Hagen
Bork, Peer
Harrington, Eoghan D.
Hermjakob, Henning
Jensen, Lars J.
Juan, David A.
Lengauer, Thomas
Pagel, Philipp
Schachter, Vincent
Valencia, Alfonso | 2009 | | Protein-protein interactions: analysis and prediction
In: Modern Genome Annotation - The Biosapiens Network, 353-410 | Part of a Book |
| Albrecht2008l | Schelhorn, Sven-Eric
Lengauer, Thomas
Albrecht, Mario | 2008 | | An integrative approach for predicting interactions of protein regions
In: Bioinformatics [24], i35-i41 | Journal Article |
| Albrecht2009a | Blankenburg, Hagen
Finn, Robert D.
Prlić, Andreas
Jenkinson, Andrew M.
Ramírez, Fidel
Emig, Dorothea
Schelhorn, Sven-Eric
Büch, Joachim
Lengauer, Thomas
Albrecht, Mario | 2009 | | DASMI: exchanging, annotating and assessing molecular interaction data
In: Bioinformatics [25], 1321-1328 | Journal Article |
| Albrecht2009b | Blankenburg, Hagen
Ramírez, Fidel
Büch, Joachim
Albrecht, Mario | 2009 | | DASMIweb: online integration, analysis and assessment of distributed protein interaction data
In: Nucleic Acids Research [37], W122-W128 | Electronic Journal Article |
| Albrecht2009c | Albrecht, Mario
Kerren, Andreas
Klein, Karsten
Kohlbacher, Oliver
Mutzel, Petra
Paul, Wolfgang
Schreiber, Falk
Wybrow, Michael | 2010 | | On open problems in biological network visualization
In: Graph Drawing : 17th International Symposium, GD 2009, 256-267 | Proceedings Article |
| Albrecht2010a | Schlicker, Andreas
Albrecht, Mario | 2010 | | FunSimMat update: new features for exploring functional similarity
In: Nucleic Acids Research [38], D244-D248 | Journal Article |
| Albrecht2010b | Ramírez, Fidel
Albrecht, Mario | 2010 | | Finding scaffold proteins in interactomes
In: Trends in Cell Biology [20], 2-4 | Journal Article |
| Albrecht2010c | Franke, Andre
Balschun, Tobias
Sina, Christian
Ellinghaus, David
Häsler, Robert
Mayr, Gabriele
Albrecht, Mario
Wittig, Michael
Buchert, Eva
Nikolaus, Susanna
Gieger, Christian
Wichmann, H. Erich
Sventoraityte, Jurgita
Kupcinskas, Limas
Onnie, Clive M.
Gazouli, Maria
Anagnou, Nicholas P.
Strachan, David
McArdle, Wendy L.
Mathew, Christopher G.
Rutgeerts, Paul
Vermeire, Séverine
Vatn, Morten H.
Krawczak, Michael
Rosenstiel, Philip
Karlsen, Tom H.
Schreiber, Stefan | 2010 | | Genome-wide association study for ulcerative colitis identifies risk loci at 7q22 and 22q13 (IL17REL)
In: Nature Genetics [42], 292-294 | Journal Article |
| Albrecht2010d | Schlicker, Andreas
Lengauer, Thomas
Albrecht, Mario | 2010 | | Improving disease gene prioritization using the semantic similarity of Gene Ontology terms
In: Bioinformatics [26], i561-i567 | Journal Article |
| Albrecht2010e | Welker, Martin-Walter
Welsch, Christoph
Meyer, Aline
Antes, Iris
Albrecht, Mario
Forestier, Nicole
Kronenberger, Bernd
Lengauer, Thomas
Piiper, Albrecht
Zeuzem, Stefan
Sarrazin, Christoph | 2010 | | Dimerization of the hepatitis C virus nonstructural protein 4B depends on the integrity of an aminoterminal basic leucine zipper
In: Protein Science [19], 1327-1336 | Journal Article |
| Albrecht2010f | Emig, Dorothea
Salomonis, Nathan
Baumbach, Jan
Lengauer, Thomas
Conklin, Bruce R.
Albrecht, Mario | 2010 | | AltAnalyze and DomainGraph: analyzing and visualizing exon expression data
In: Nucleic Acids Research [38], W755-W762 | Journal Article |
| Albrecht2010g | Emig, Dorothea
Kacprowski, Tim
Albrecht, Mario | 2010 | | Measuring and analyzing tissue specificity of human genes and protein complexes
In: Seventh International Workshop on Computational Systems
Biology, WCSB 2010, 27-30 | Proceedings Article |
| Albrecht2010h | Albrecht, Mario | 2010 | | Color blindness
In: Nature Methods [7], 775 | Journal Article |
| Albrecht2010i | Brunner, Susanne
Hurni, Severine
Streckeisen, Philipp
Mayr, Gabriele
Albrecht, Mario
Yahiaoui, Nabila
Keller, Beat | 2010 | | Intragenic allele pyramiding combines different specificities of wheat Pm3 resistance alleles
In: The Plant Journal [64], 433-445 | Journal Article |
| Albrecht2010j | Ellinghaus, Eva
Ellinghaus, David
Stuart, Philip E.
Nair, Rajan P.
Debrus, Sophie
Raelson, John V.
Belouchi, Majid
Fournier, Hélène
Reinhard, Claudia
Ding, Jun
Li, Yun
Tejasvi, Trilokraj
Gudjonsson, Johann
Stoll, Stefan W.
Voorhees, John J.
Lambert, Sylviane
Weidinger, Stephan
Eberlein, Bernadette
Kunz, Manfred
Rahman, Proton
Gladman, Dafna D.
Gieger, Christian
Wichmann, H. Erich
Karlsen, Tom H.
Mayr, Gabriele
Albrecht, Mario
Kabelitz, Dieter
Mrowietz, Ulrich
Abecasis, Gonçalo R.
Elder, James T.
Schreiber, Stefan
Weichenthal, Michael
Franke, Andre | 2010 | | Genome-wide association study identifies a psoriasis susceptibility locus at TRAF3IP2
In: Nature Genetics [42], 991-995 | Journal Article |
| Albrecht2011a | Reiss, Simon
Rebhan, Ilka
Backes, Perdita
Romero-Brey, Ines
Erfle, Holger
Matula, Petr
Kaderali, Lars
Poenisch, Marion
Blankenburg, Hagen
Hiet, Marie-Sophie
Longerich, Thomas
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Albrecht, Mario
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Lee, James
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Wijmenga, Cisca
Strachan, David P.
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Rutgeerts, Paul
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Mathew, Christopher G.
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Halfvarson, Jonas
D'Amato, Mauro
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Nothnagel, Michael
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Rosenstiel, Philip
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Universität des Saarlandes | Thesis - Habilitation thesis |
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Universität des Saarlandes | Thesis - Masters thesis |
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Universität des Saarlandes | Thesis - Masters thesis |
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Universität des Saarlandes | Thesis - Masters thesis |
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Ruprecht Karl Universität Heidelberg; Universität Heilbronn | Thesis - other |
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Halachev, Konstantin
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Walter, Jörn
Paulsen, Martina
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Universität des Saarlandes | Thesis - PhD thesis |
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Walter, Jörn
Paulsen, Martina
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Mikeska, Thomas
Waha, Andreas
Lengauer, Thomas
Bock, Christoph | 2009 | | MethMarker: User-friendly design and optimization of gene-specific DNA methylation assays
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Von Kuster, Greg
Halachev, Konstantin
Taylor, James
Nekrutenko, Anton
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Bock, Christoph
Do, Hongdo
Dobrovic, Alexander | 2012 | | DNA methylation biomarkers in cancer: Progress towards clinical implementation
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Bock, Christoph
de Boer, A. Sophie
Kiskinis, Evangelos
Meissner, Alexander
Eggan, Kevin | 2012 | | Erosion of dosage compensation impacts human iPSC disease modeling
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Kiskinis, Evangelos
Verstappen, Griet
Gu, Hongcang
Boulting, Gabriella
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Ziller, Michael
Croft, Gist F.
Amoroso, MacKenzie W.
Oakley, Derek H.
Gnirke, Andreas
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Bast, H.
Albrecht, F.
Lengauer, Thomas
Bock, Christoph | 2012 | | EpiExplorer: live exploration and global analysis of large epigenomic datasets
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Bock, Christoph
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Gnirke, Andreas
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Universität des Saarlandes | Thesis - Masters thesis |
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Bickel, Steffen
Altmann, André
Lengauer, Thomas | 2010 | | Dealing with sparse data in predicting outcomes of HIV combination therapies
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Stöckel, Daniel
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Kaiser, Rolf
Incardona, Francesca
Rosen-Zvi, Michal
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Universität des Saarlandes | Thesis - PhD thesis |
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Lengauer, Thomas
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Kaiser, Rolf
Lengauer, Thomas | 2009 | | V3 loop sequence space analysis suggests different evolutionary patterns of CCR5- and CXCR4-tropic HIV.
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Lengauer, Thomas | 2010 | | Positive selection of HIV host factors and the evolution of lentivirus genes
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Rosahl, A. L.
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Universität des Saarlandes | Thesis - PhD thesis |
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Assenov, Yassen
Bock, Christoph
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Thielen, Alexander
García, Federico
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Martínez-Picado, Javier Alvarez-Tejado, Miguel
Clotet, Bonaventura
Ruiz, Lidia
Paredes, Roger | 2010 | | Dynamic escape of pre-existing raltegravir-resistant HIV-1 from raltegravir selection pressure
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Thielen, Alexander
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Delgado, Rafael
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Álvarez-Tejado, Miguel
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Clotet, Bonaventura
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Kaiser, Rolf
Klein, Rolf
Lengauer, Thomas
Thiele, Bernhard
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Awerkiew, Sabine
Sierra Aragon, Saleto
Kartashev, Vladimir
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Lengauer, Thomas
Roomp, Kirsten
Pfister, Herbert
Kaiser, Rolf | 2010 | | Short Communication: Selection of Thymidine Analogue Resitance Mutational Patterns in Children from a Common HIV Type 1 Subtype G Source
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Universität des Saarlandes | Thesis - Masters thesis |
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Universität des Saarlandes | Thesis - Masters thesis |
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Hannemann, Frank
Lisurek, Michael
von Kries, Jens Peter
Zapp, Josef
Dietzen, Matthias
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Bernhardt, Rita | 2011 | | Identification of CYP106A2 as a Regioselective Allylic Bacterial Diterpene Hydroxylase
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Zotenko, Elena
Hildebrandt, Andreas
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Universität des Saarlandes | Thesis - Bachelor thesis |
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Universität des Saarlandes | Thesis - Masters thesis |
| Doering2011 | Döring, Matthias | 2011 | | Web Implementation of the HBV Dual Infection Model
Universität des Saarlandes | Thesis - Bachelor thesis |
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Rahnenführer, Jörg
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Universität des Saarlandes | Thesis - Masters thesis |
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Universität des Saarlandes | Thesis - Bachelor thesis |
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Universität des Saarlandes | Thesis - Bachelor thesis |
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Lakizadeh, Amir
Agha-Golzadeh, Esmaeil
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Universität des Saarlandes | Thesis - Masters thesis |
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Eberhard Karls Universität Tübingen | Thesis - other |
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Universität des Saarlandes | Thesis - PhD thesis |
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Universität des Saarlandes | Thesis - Bachelor thesis |
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Universität des Saarlandes | Thesis - Masters thesis |
| Feuerbach2008 | Feuerbach, Lars
Christopher, Bock
Halachev, Konstantin
Büch, Joachim
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Halachev, Konstantin
Lengauer, Thomas
Bock, Christoph | 2009 | | An exhaustive methode for CpG island annotation
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Lyngsoe, Rune
Lengauer, Thomas
Hein, Jotun | 2010 | | Comparative Epigenomiocs - Towards Ancestral Germline Methylome Reconstruction
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Lengauer, Thomas | 2010 | | Ancestral germline methylation reconstruction of young repeats
In: Transcription, chromatin structure and DNA repair in development and differentiation, 81 | Poster |
| Feuerbach2011a | Feuerbach, Lars
Lyngso, Rune B.
Lengauer, Thomas
Hein, Jotun | 2011 | | Reconstructing the ancestral germline methylation state of young repeats
In: Molecular Biology and Evolution [28], 1777-1784 | Journal Article |
| Fischer2008 | Fischer, Sandra | 2008 | | Structure-based prediction of HIV-1 drug resistance
Universität des Saarlandes | Thesis - Masters thesis |
| FMueller2008_bachelor | Müller, Fabian | 2008 | | Inferring virological response to antiretroviral combination therapy based on past treatment lines
Universität des Saarlandes | Thesis - Bachelor thesis |
| Frings2006a | Frings, Oliver | 2006 | | Development of a
Smith-Waterman-Like Multi-Aspect
Alignment Tool
Universität des Saarlandes | Thesis - Bachelor thesis |
| GalataBachelor2012 | Galata, Valentina | 2012 | | Applying Lasso regression to related cell types for gene network astimation
Universität des Saarlandes | Thesis - Bachelor thesis |
| Gatzmann2010a | Gatzmann, Fanny | 2010 | | GOdot Sequence - function prediction from protein sequence
Universität des Saarlandes | Thesis - Bachelor thesis |
| Glaab2006a | Glaab, Enrico | 2006 | | On the predictability of CpG methylation in human tissue at single basepair resolution
Universität des Saarlandes | Thesis - Bachelor thesis |
| GuBock2010 | Gu, Hongcang
Bock, Christoph
Mikkelsen, Tarjei S.
Jäger, Natalie
Smith, Zachary D.
Tomazou, Eleni
Gnirke, Andreas
Lander, Eric S.
Meissner, Alexander | 2010 | | Genome-scale DNA methylation mapping of clinical samples at single-nucleotide resolution
In: Nature Methods [7], 133-136 | Journal Article |
| Guo2006a | Guo, Xin | 2006 | | Improving Fold Recognition Using Protein
and Domain Interactions
Universität des Saarlandes | Thesis - Masters thesis |
| Gwinner2009 | Gwinner, Frederik | 2009 | | Assessing the Conservation of Protein Function on Evolutionary Defined Patches
Universität des Saarlandes | Thesis - Masters thesis |
| Hahn2002 | Hahn, Andreas
Costello, Christine M.
Lu, Tim
Lengauer, Thomas
Schreiber, Stefan | 2002 | | Expression analysis for inflammatory bowel disease
In: Proceedings of the n?th Conference on, ? | Poster |
| Hahn2004 | Hahn, Andreas
Costello, Christine M.
Lu, Tim
Lengauer, Thomas
Schreiber, Stefan | 2004 | | Expression analysis for inflammatory bowel disease
In: Workshop Poster Competition, ? | Poster |
| Hahn2005 | Hahn, Andreas
Rahnenführer, Jörg
Talwar, Priti
Lengauer, Thomas | 2005 | | Confirmation of human protein interaction data by human expression data
In: BMC Bioinformatics [6], 1-11 | Journal Article |
| Haid2007 | Haid, Carla | 2007 | | BSIFlex: Binding Site Identification including protein flexibility
Universität des Saarlandes | Thesis - Masters thesis |
| halachev2012 | Halachev, Konstantin
Bast, Hannah
Albrecht, Felipe
Lengauer, Thomas
Bock, Christoph | 2012 | | EpiExplorer: live exploration and global analysis of large epigenomic datasets
In: Genome Biology [13], R96,1-R96,14 | Electronic Journal Article |
| HalachevMaster2006 | Halachev, Konstantin | 2006 | | EpiGRAPHregression: A toolkit for (epi-)genomic correlation analysis and prediction of quantitative attributes
Universität des Saarlandes | Thesis - Masters thesis |
| Harrigan2009IDRW | Harrigan, P Richard
McGovern, Rachel
Dong, Winnie
Thielen, Alexander
Jensen, Mark
Mo, Theresa
Chapman, Douglas
Lewis, Marilyn
James, Ian
Valdez, Hernan | 2009 | | Screening for HIV tropism using population-based V3 genotypic analysis: a retrospective outcome analysis using stored plasma screening samples from MOTIVATE-1
In: Abstracts presented at the XVIII International HIV Drug Resistance Workshop : Basic Principles & Clinical Implications, A17-A17 | Poster |
| Harris2010 | Harris, R. Alan
Wang, Ting
Coarfa, Cristian
Nagarajan, Raman P.
Hong, Chibo
Downey, Sara L.
Johnson, Brett E.
Fouse, Shaun D.
Delaney, Allen
Zhao, Yongjun
Olshen, Adam
Ballinger, Tracy
Zhou, Xin
Forsberg, Kevin J.
Gu, Junchen
Echipare, Lorigail
O'Geen, Heriette
Lister, Ryan
Pelizzola, Mattia
Xi, Yuanxin
Epstein, Charles B.
Bernstein, Bradley E.
Hawkins, R. David
Ren, Bing
Chung, Wen-Yu
Gu, Hongcang
Bock, Christoph
Gnirke, Andreas
Zhang, Michael Q.
Haussler, David
Ecker, Joseph R.
Li, Wei
Farnham, Peggy J.
Waterland, Robert a.
Meissner, Alexander
Marra, Marco A.
Hirst, Martin
Milosavljevic, Aleksandar
Costello, Joseph F. | 2010 | | Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications
In: Nature Biotechnology [28], 1097-1105 | Journal Article |
| Hartmann2007 | Hartmann, Christoph
Antes, Iris
Lengauer, Thomas | 2007 | | IRECS: A new algorithm for the selection of most probable ensembles of side-chain conformations in protein models.
In: Protein Science [16], 1294-1307 | Journal Article |
| hartmann2008 | Hartmann, Christoph | 2008 | | Modeling of Flexible Side Chains for Protein-Ligand Docking
Universität des Saarlandes | Thesis - PhD thesis |
| Hartmann2009 | Hartmann, Christoph
Antes, Iris
Lengauer, Thomas | 2009 | | Docking and scoring with alternative side-chain conformations
In: Proteins: Structure, Function, and Bioinformatics [74], 712-726 | Journal Article |
| Hauschild2011a | Hauschild, Anne-Christin | 2011 | | Modeling HIV Neutralization
Universität des Saarlandes | Thesis - Masters thesis |
| Hauschild2012 | Hauschild, Anne-Christin
Baumbach, Jörg Ingo
Baumbach, Jan | 2012 | | Integrated statistical learning of metabolic ion mobility spectrometry profiles for pulmonary disease identification
In: Genetics and Molecular Research [11], 2733-2744 | Electronic Journal Article |
| Hauschild2012b | Hauschild, Anne-Christin
Schneider, Till
Pauling, Josch
Rupp, Kathrin
Jang, Mi
Baumbach, Jörg Ingo
Baumbach, Jan | 2012 | | Computational Methods for Metabolomic Data Analysis of Ion Mobility Spectrometry Data - Reviewing the State of the Art
In: Metabolites [2], 733-755 | Electronic Journal Article |
| Hauschild2012c | Hauschild, Anne-Christin
Kopczynski, Dominik
D'Addario, Marianna
Baumbach, Joerg Ingo
Rahmann, Sven
Baumbach, Jan | 2013 | | Peak Detection Method Evaluation for Ion Mobility Spectrometry by using Machine Learning Approaches
In: Metabolites [3], 277-293 | Electronic Journal Article |
| Hauschild2013b | Hauschild, Anne-Christin
Baumbach, Joerg Ingo
Baumbach, Jan | 2013 | | Paving the Way for Automated Clinical Breath Analysis and Biomarker Detection | Miscellaneous |
| Hauschild2013d | Schneider, Till
Hauschild, Anne-Christin
Baumbach, Joerg Ingo
Baumbach, Jan | 2013 | | An Integrative Clinical Database and Diagnostics Platform for Biomarker Identification and Analysis in Ion Mobility Spectra of Human Exhaled Air
In: Journal of Integrative Bioinformatics [10], | Electronic Journal Article |
| Hauschild2014 | Eckel, Sandrah
Baumbach, Jan
Hauschild, Anne-Christin | 2014 | | On the importance of statistics in breath analysis - Hope or curse? | Unpublished/Draft |
| Hauschild2014 | Smolinska, Agnieszka
Hauschild, Anne-Christin
Fijten, Rianne
Dallinga, Jan
Baumbach, Jan
van Schooten, Frederik | 2014 | | Current breathomics – A review on data pre-processing techniques and machine learning in metabolomics breath analysis | Unpublished/Draft |
| Hauschild2014a | Maurer, Felix
Hauschild, Anne-Christin
Eisinger, Kathrin
Baumbach, Jan
Mayor, Arno
Baumbach, Jörg Ingo | 2014 | | MIMA - A software for analyte identification in MCC/IMS chromatograms by mapping accompanying GC/MS measurements
In: International Journal for Ion Mobility Spectrometry [?], ? | Journal Article |
| Herger2011 | Heger, Eva
Thielen, Alexander
Gilles, Ramona
Obermeier, Martin
Lengauer, Thomas
Kaiser, Rolf
Trapp, Susanna | 2011 | | APOBEC3G/F as one possible driving force for co-receptor switch of the human immunodeficiency virus-1
In: Medical Microbiology and Immunology [201], 7-16 | Journal Article |
| Hobler2006 | Hobler, Anna | 2006 | | Docking of monosaccharids into the wild type and mutants of pyranose 2-oxidase
Universität des Saarlandes | Thesis - Bachelor thesis |
| HofmannFernandez2007 | Hofmann, Wolf Peter
Fernandez, B.
Herrmann, E.
Welsch, Christoph
Mihm, Ulrike
Kronenberg, B.
Feldmann, G.
Spengler, U.
Zeuzem, Stefan
Sarrazin, Christoph | 2007 | | Somatic hypermutation and mRNA expression levels of the BCL-6 gene in patients with hepatitis C virus-associated lymphoproliferative diseases
In: Journal of Viral Hepatitis [14], 484-491 | Journal Article |
| HofmannWelsch2007 | Hofmann, Wolf Peter
Welsch, Christoph
Takahashi, Yoshitomo
Miyajima, Hiroaki
Mihm, Ulrike
Krick, Christoph
Zeuzem, Stefan
Sarrazin, Christoph | 2007 | | Identification and in silico characterization of a novel compound heterozygosty associated with hereditary aceruloplasminemia
In: Scandinavian Journal of Gastroenterology [42], 1088-1094 | Journal Article |
| Hoinka2011a | Hoinka, Jan-Malte | 2011 | | Finding the Hairpin in the Haystack: Towards an High Throughput in Silico Pipeline for Aptamer Motif Identification using SELEX Data
Universität des Saarlandes | Thesis - Masters thesis |
| HornsteinAlexa2008 | Hornstein, Max
Hoffmann, Michele J.
Alexa, Adrian
Yamanaka, Masanori
Müller, Mirko
Jung, Volker
Rahnenführer, Jörg
Schulz, Wolfgang A. | 2008 | | Protein phosphatase and TRAIL receptor genes as new candidate tumor genes on chromosome 8p in prostate cancer
In: Cancer Genomics & Proteomics [5], 123-136 | Journal Article |
| Huthmacher2006a | Huthmacher, Carola | 2006 | | Decomposing Protein Networks Into
Domain-Domain Interactions
Eberhard Karls University Tübingen | Thesis - other |
| Immesberger2005a | Immesberger, Stefan | 2005 | | A Prefiltering Method to Speed up Protein
Structure Prediction
Universität des Saarlandes | Thesis - Bachelor thesis |
| Ivanova2011a | Ivanova, Violeta | 2011 | | Comparison of methods for discovering genomic aberrations relevant for cancer
Universität des Saarlandes | Thesis - Masters thesis |
| Jaeger2008 | Sierra, Saleta
Kaiser, Rolf
Thielen, Alexander
Sander, Oliver
Lengauer, Thomas | 2008 | | Genotypic Analysis of HIV Co-Receptor Usage
In: Entry Inhibitoren - Neue Formen der HIV-Therapie, 31-39 | Part of a Book |
| Jing2011a | Jing, Cui | 2011 | | A comprehensive analysis of the illumina Infinium assay
Universität des Saarlandes | Thesis - Masters thesis |
| Jung2006a | Jung, Holger | 2006 | | Yamada Analyzer - A tool for fast calculation of genomic attributes
Universität des Saarlandes | Thesis - Bachelor thesis |
| JungeBachelor2012 | Junge, Alexander | 2011 | | Unsupervised dissection of cancer types based on genomic, epigenomic and transciptomic features
Universität des Saarlandes | Thesis - Bachelor thesis |
| Kacprowski2010a | Kacprowski, Tim | 2010 | | Analysis of protein complexes and tissue-spedific expression
Universität des Saarlandes | Thesis - Bachelor thesis |
| Kacprowski2011 | Kacprowski, Tim | 2011 | | Disease gene prioritization by combining network information and functional knowledge
Universität des Saarlandes | Thesis - Masters thesis |
| Kaemper2005 | Kämper, Andreas
Kaspar, Melanie
Lengauer, Thomas | 2005 | | Efficient conformational analysis of synthetic receptors with macrocyclic and fused ring systems
In: Synthetic Receptors 2005: Second World Congress on Synthetic Receptors, O4 | Proceedings Article |
| Kaemper2006a | Kämper, Andreas
Apostolakis, Joannis
Rarey, Matthias
Marian, Christel Maria
Lengauer, Thomas | 2006 | | Fully Automated Flexible Docking of Ligands into Flexible Synthetic Receptors Using Forward and Inverse Docking Strategies
In: Journal of Chemical Information and Modeling [46], 903-911 | Journal Article |
| Kaemper2007a | Kämper, Andreas
Rognan, Didier
Lengauer, Thomas | 2007 | | Lead Identification by Virtual Screening
In: Bioinformatics - From Genomes to Therapies 2. Getting at the Inner Workings: Molecular Interactions, 651-704 | Part of a Book |
| KaemperLengauer2001a | Kämper, Andreas
Apostolakis, Joannis
Rarey, Matthias
Marian, Christel Maria
Lengauer, Thomas | 2001 | | Docking of Ligands into Artificial Receptors
In: Electronically Excited Molecules: Structure and Dynamics, 37th Symposium for Theoretical Chemistry, P76 | Proceedings Article |
| KaemperLengauer2001b | Kämper, Andreas
Apostolakis, Joannis
Rarey, Matthias
Marian, Christel Maria
Lengauer, Thomas | 2001 | | Docking of Ligands into Artificial Receptors | Miscellaneous |
| KaemperLengauer2002a | Kämper, Andreas
Apostolakis, Joannis
Lengauer, Thomas | 2002 | | Docking of Bacterial Cell-Wall Fragments into Glycopeptide Antibiotics
In: From Genes to Drugs via Crystallography: 33rd crytallographic course at the E. Majorana Center, 49 | Poster |
| KaemperLengauer2002b | Kämper, Andreas
Lengauer, Thomas | 2002 | | Docking of Ligands into Molecular Tweezers and Molecular Clips
In: Workshop of the SFB 624 'Templates', ?-? | Poster |
| KaemperLengauer2003a | Kämper, Andreas
Lengauer, Thomas | 2003 | | Virtual Screening for novel Urease Inhibitors
In: Proceedings of the International Workshop on New Approaches in Drug Design & Discovery, 39 | Poster |
| KaemperLengauer2003b | Kämper, Andreas
Lengauer, Thomas | 2003 | | ECLIPPSE: Environment for Chemical Library Inspection, Pre- and Postprocessing, and Screening Evaluation. User Guide | Manual |
| Kaiser2005 | Kaiser, Rolf
Boussaad, Ibo
Lehmann, C.
Däumer, Martin
Sing, Tobias
Schmeisser, N.
Wyen, C.
Fätkenheuer, Gerd | 2005 | | Stable coreceptor usage of HIV-1 in patients with ongoing treatment failure on HAART
In: Proceedings of the 3rd European HIV Drug Resistance Workshop, - | Proceedings Article |
| Kalaghatgi2012a | Kalaghatgi, Prabhav | 2012 | | A Phylodynamic Study of HIV Transmission Networks in Europe
Universität des Saarlandes | Thesis - Masters thesis |
| Kalaghatgi2013 | Kalaghatgi, Prabhav
Lawyer, Glenn | 2013 | | Inter-country mixing in HIV transmission clusters: a pan-European phylodynamics study
In: Abstract Book 11th European HIV & Hepatitis Workshop, 9 | Poster |
| Kalinina2013 | Kalinina, Olga
Pfeifer, Nico
Lengauer, Thomas | 2013 | | Modelling binding between CCR5 and CXCR4 receptors and their ligands suggests the surface electrostatic potential of the co-receptor to be a key player in the HIV-1 tropism
In: Retrovirology [10], 130 | Journal Article |
| Kalininar2012 | Kalinina, Olga V.
Oberwinkler, Heike
Glass, Bärbel
Kräusslich, Hans-Georg
Russell, Robert B.
Briggs, John A. G. | 2012 | | Computational Identification of Novel Amino-Acid Interactions in HIV Gag via Correlated Evolution
In: PLoS ONE [7], e42468,1-e42468,5 | Electronic Journal Article |
| Kamp2010 | Kamp, Christel
Wolf, Timo
Bravo, Ignacio G
Kraus, Benjamin
Krause, Birgit
Neumann, Britta
Winskowsky, Gudrun
Thielen, Alexander
Werner, Albrecht
Schnierle, Barbara S | 2010 | | Decreased HIV diversity after allogeneic stem cell transplantation of an HIV-1 infected patient: a case report.
In: Virology Journal [7], 55,1-55,9 | Electronic Journal Article |
| Kaspar2005a | Kaspar, Melanie | 2005 | | Conformational Analysis of Macrocyclic Ring Systems
Universität des Saarlandes | Thesis - Bachelor thesis |
| Kaspar2006a | Kaspar, Melanie | 2006 | | Automated conformational analysis of macrocyclic ring systems
Universität des Saarlandes | Thesis - Masters thesis |
| Kircher2007 | Kircher, Martin | 2007 | | In silico analysis of microRNA genes on human chromosome 14 and mouse chromosome 12
Universität des Saarlandes | Thesis - Masters thesis |
| Kircher2008 | Kircher, Martin
Bock, Christoph
Paulsen, Martina | 2008 | | Structural conservation versus functional divergence of maternally expressed microRNAs in the Dlk1/Gtl2 imprinting region
In: BMC Genomics [9], 346 | Journal Article |
| Klingen2012a^ | Klingen, Thorsten | 2012 | | Automatic Recombination Analysis Using Recoo and Mebitoo
Universität des Saarlandes | Thesis - Bachelor thesis |
| Knoepfel2010 | Knoepfel, Stefanie
Di Giallonardoc, Francesca
Däumer, Martin
Thielen, Alexander
Metzner, Karin J | 2011 | | In-depth analysis of G-to-A hypermutation rate in HIV-1 env DNA induced by endogenous APOBEC3 proteins using massively parallel sequencing
In: Journal of Virological Methods [71], 329-338 | Journal Article |
| KoenigMaster2012 | König, Eva | 2012 | | Automatic detection of loss of heterozygosity in cancer
Universität des Saarlandes | Thesis - Masters thesis |
| König2010a | König, Eva | 2010 | | Env-wide analysis of coreceptor determining sites and subtype-specific differences in HIV-1
Universität des Saarlandes | Thesis - Bachelor thesis |
| Kono2009 | Kono, Ken
Bozek, Kasia
Domingues, Francisco S.
Shioda, Tatsuo
Nakayama, Emi E. | 2009 | | Impact of a single amino acid in the variable region 2 of the Old World monkey TRIM5alpha SPRY (B30.2) domain on anti-human immunodeficiency virus type 2 activity
In: Virology [388], 160-168 | Journal Article |
| Korbel2007 | Korbel, Ulli S. | 2007 | | Identification of Symmetries in Molecules and Complexes
Universität des Saarlandes | Thesis - Masters thesis |
| KoserMaster^2012 | Koser, Sandra | 2012 | | Reconstructing anecestral methylation states in phylogenetic trees
Universität des Saarlandes | Thesis - Masters thesis |
| Krier2005a | Krier, Markus | 2005 | | Motif Search in Protein Sequences for Protein
Structure Prediction
Universität des Saarlandes | Thesis - Bachelor thesis |
| Kuhn2010a | Kuhn Cuellar, Luis Eugenio | 2010 | | A probabilistic algorithm for matching protein structures - and its application to detecting functionally relevant patterns
Universität des Saarlandes | Thesis - Masters thesis |
| Kunert2010a | Kunert, Lars | 2011 | | Maximal Common Subgraph DAGs: Theory and Application to Virtual Screening in Drug Development
Universität des Saarlandes | Thesis - PhD thesis |
| KuroishiBozek2010 | Kuroishi, Ayumu
Bozek, Katarzyna
Shioda, Tatsuo
Nakayama, Emi E. | 2010 | | A single amino acid substitution of the human immunodeficiency virus type 1 capsid protein affects viral sensitivity to TRIM5 alpha.
In: Retrovirology [7], 58,1-58,10 | Electronic Journal Article |
| Lawyer2009_cerebellum | Lawyer, Glenn
Nesvåg, Ragnar
Varnäs, Katarina
Okugawa, Gaku
Agartz, Ingrid | 2009 | | Grey and white matter proportional relationships in the cerebellar vermis altered in schizophrenia
In: Cerebellum [8], 52-60 | Journal Article |
| Lawyer2009_lFDR | Lawyer, Glenn
Ferkingstad, Egil
Nesvåg, Rangan
Varnäs, Katarina
Agartz, Ingrid | 2009 | | Local and covariate-modulated false discovery rates applied in neuroimaging
In: NeuroImage [47], 213-219 | Journal Article |
| Lawyer2011 | Lawyer, Glenn
Altmann, André
Thielen, Alex
Zazzi, Maurizio
Sönnerborg, Anders
Lengauer, Thomas | 2011 | | HIV-1 mutational pathways under multidrug therapy
In: AIDS Research and Therapy [8], 1-13 | Journal Article |
| Lawyer2012 | Lawyer, Glenn
Schülter, Eugen
Kaiser, Rolf
Reuter, Stefan
Oette, Mark
Lengauer, Thomas | 2012 | | Endogenous or exogenous spreading of HIV-1 in Nordrhein-Westfalen, Germany, investigated by phylodynamic analysis of the RESINA Study cohort
In: Medical Microbiology and Immunology [201], 259-269 | Journal Article |
| LengAltThie2009 | Lengauer, Thomas
Altmann, André
Thielen, Alexander | 2009 | | Bioinformatische Unterstützung der Auswahl von HIV Therapien
In: Informatik Spektrum [32], 320-331 | Journal Article |
| Lengauer-Genafor2007 | Lengauer, Oette, Selbig, Hoffmann, Poggensee, Hamouda, Häussinger, Kaiser (ed.) | 2007 | | European Journal of Medical Research | Journal |
| Lengauer2001a | Zien, Alexander
Aigner, T.
Zimmer, Ralf
Lengauer, Thomas | 2001 | | Centralization: A biologically sensible method for the normalization of gene expression data
In: Bioinformatics [17], 323S-331S | Journal Article |
| Lengauer2001b | Lengauer (ed.) | 2001 | | From Genomes to Drugs | Book |
| Lengauer2001c | Lengauer, Sankoff, Istrail, Pevzner, Waterman (ed.) | 2001 | | Proceedings of the 5th Annual Conference on Research in Computational Molecular Biology (RECOMB2001) | Book |
| Lengauer2001d | Claussen, C.
Buning, Christian
Rarey, Matthias
Lengauer, Thomas | 2001 | | FlexE: Efficient Molecular Docking Considering Protein Structure Variations
In: Journal of Molecular Biology [308], 377-395 | Journal Article |
| Lengauer2001e | Apostolakis, Joannis
Hofmann, D.
Lengauer, Thomas | 2001 | | Derivation of a scoring function for crystal structure prediction
In: Acta Crystallographica [A57], 442-450 | Journal Article |
| Lengauer2001f | Beerenwinkel, Niko
Schmidt, Barbara
Walter, Hauke
Kaiser, Rolf
Lengauer, Thomas
Hoffmann, Daniel
Korn, Klaus
Selbig, Joachim | 2001 | | Geno2pheno: A system for the interpretation of genotypic HIV Drug resistance tests
In: IEEE Intelligent Systems [16], 35-41 | Journal Article |
| Lengauer2001g | Schäfer, M.
Lengauer, Thomas | 2001 | | Automated Layout Generation and Wiring Area Estimation for 3D Electronic Modules
In: ASME Journal of Machanical Design [123], 330-336 | Journal Article |
| Lengauer2001h | Lengauer, Thomas | 2001 | | Bioinformatik an der Schwelle zur postgenomischen Ära
In: Was wissen wir, wenn wir das menschliche Genom kennen, 56-62 | Part of a Book |
| Lengauer2001r | Lengauer, Thomas
Beerenwinkel, Niko
Schmidt, B.
Walter, H.
Kaiser, R.
Hoffmann, D.
Korn, K.
Selbig, J. | 2001 | | Geno2pheno: a new machine learning approach to predicting phenotypic drug resistance from genotype
In: Antiviral Therapy [6], 104 | Journal Article |
| Lengauer2002a | Hindle, Sally A.
Rarey, Matthias
Buning, Christian
Lengauer, Thomas | 2002 | | Flexible docking under pharmacophore type constraints
In: Journal of Computer-Aided Molecular Design [16], 129-149 | Journal Article |
| Lengauer2002b | Hanisch, Daniel
Zimmer, Ralf
Lengauer, Thomas | 2002 | | ProML - the Protein Markup Language for specification of protein sequences, structures and families
In: In Silico Biology [2], 313 - 324 | Journal Article |
| Lengauer2002c | Freudenberg, Jan
Zimmer, Ralf
Hanisch, Daniel
Lengauer, Thomas | 2002 | | A hypergraph-based method for unification of existing protein structure- and sequence-families
In: In Silico Biology [2], 339 - 349 | Journal Article |
| Lengauer2002d | Lengauer, Thomas | 2002 | | Preface: Special RECOMB 2001 Issue
In: Journal of Computational Biology [9], 147-148 | Journal Article |
| Lengauer2002e | Lengauer, Thomas | 2002 | | Ausbildung im Bereich Bioinformatik
In: Ernst & Young Report Biotechnologie, Segmentreport Bioinformatik [1], 57-58 | Journal Article |
| Lengauer2002f | Zien, Alexander
Fluck, Juliane
Zimmer, Ralf
Lengauer, Thomas | 2002 | | Microarrays: How Many Do You Need?
In: Proceedings of the Sixth Annual Conference on Research in Computational Molecular Biology (RECOMB2002), 321-330 | Proceedings Article |
| Lengauer2002g | Hanisch, Daniel
Zien, Alexander
Zimmer, Ralf
Lengauer, Thomas | 2002 | | Co-clustering of biological networks and gene expression data
In: Proceedings of the Tenth Conference on Intelligent Systems for Molecular Biology (ISMB 2002), 145-154 | Proceedings Article |
| Lengauer2003a | Zien, Alexander
Fluck, Juliane
Zimmer, Ralf
Lengauer, Thomas | 2003 | | Microarrays: How many do you need?
In: Journal of Computational Biology [10], 653-667 | Journal Article |
| Lengauer2003b | Lengauer, Thomas
Schäfer, M. | 2003 | | Combinatorial Optimization Techniques for Three-Dimensional Arrangement Problems
In: Mathematics - Key Technology for the Future, 63-73 | Part of a Book |
| Lengauer2003c | Lengauer, Thomas | 2003 | | Analyzing resistance phenomena in HIV with bioinformatics methods
In: Bioinformatics [19], 92i | Journal Article |
| Lengauer2004 | Crass, T.
Antes, Iris
Basekow, R.
Bork, P.
Buning, Christian
Christensen, M.
Claußen, H.
Ebeling, C.
Ernst,P.
Gailus-Durner, V.
Glatting, K.-H.
Gohla, R.
Gößling, F.
Grote, K.
Heidtke, K.
Herrmann, A.
O Keefe, S.
Kießlich, O.
Kolibal, S.
Korbel, J.O.
Lengauer, Thomas
Liebich, I.
van der Linden, M.
Luz, H.
Meissner, K.
von Mering, C.
Mevissen, T.
Mewes, H.-W.
Michael, H.
Mokrejs, M.
Müller, T.
Pospisil, H.
Rarey, Matthias
Reich, J.G.
Schneider, R.
Schomburg, D.
Schulze-Kremer, S.
Schwarzer, K.
Sommer, Ingolf
Springstubbe, S.
Suhai, S.
Thoppae, G.
Vingron, M.
Warfsmann, J.
Werner, T.
Wetzler, D.
Wingender, E.
Zimmer, Ralf | 2004 | | The Helmholtz Network for Bioinformatics: an integrative web portal for bioinformatics resources
In: Bioinformatics [20], 268-270 | Journal Article |
| Lengauer2004b | Öhsen von, Niklas
Sommer, Ingolf
Zimmer, Ralf
Lengauer, Thomas | 2004 | | Arby: Automatic protein structure prediction using profile-profile alignment and confidence measures
In: Bioinformatics [20], 2228-2235 | Journal Article |
| Lengauer2004c | Lengauer, Thomas
Lemmen, Christian
Rarey, Matthias
Zimmermann, M. | 2004 | | Novel technologies for virtual screening
In: Drug Discovery Today [9], 27-34 | Journal Article |
| Lengauer2004d | Lengauer, Thomas | 2005 | | Informatics (Computational Biology)
In: Growth Factors and Oncogenes in Gastrointestinal Cancers to Informatics (Computational Biology), 567-626 | Part of a Book |
| Lengauer2004f | Hofmann, W.P.
Herrmann, E.
Kronenberger, B.
Merkwirth, Christian
Welsch, Christoph
Lengauer, Thomas
Zeuzem, S.
Sarrazin, C. | 2004 | | Association of HCV-related mixed cryoglobulinemia with specific mutational patterns of the HCV E2 protein and CD81 expression on peripheral B lymphocytes
In: Blood [104], 1228-1229 | Journal Article |
| Lengauer2004g | Thornton, Bourne, Gilbert, Goble, Goldman, Gribskov, Hide, Higgins, Kanehisa, Lengauer, Linial, Myers, Quackenbush, Rebholz-Schuhmann, Rost, Sowdhamini, Valencia, Vingron, Xu (ed.) | 2004 | | Proceedings Twelfth International Conference on Intelligent Systems for Molecular Biology/Third European Conference on Computional Biology 2004 (ISMB/ECCB 2004) | Proceedings |
| lengauer2005a | Lengauer, Thomas
Merkwirth, Christian | 2005 | | Automatic Generation of complementary descriptors with molecular graph networks
In: Journal of Chemical Information and Modeling [45], 1159-1168 | Journal Article |
| Lengauer2005b | Hessler, G.
Zimmermann, M.
Matter, H.
Evers, A.
Naumann, T.
Lengauer, Thomas
Rarey, M. | 2005 | | Multiple-Ligand-Based Virtual Screening: Methods and Applications of the MTree Approach
In: Journal of Medicinal Chemistry [48], 6575-6584 | Journal Article |
| Lengauer2006b | Heil, Burkhard
Ludwig, Jost
Lichtenberg-Fraté, Hella
Lengauer, Thomas | 2006 | | Computational recognition of potassium channel sequences
In: Bioinformatics [13], 1562-1568 | Journal Article |
| Lengauer2006c | Neumann, Dirk
Kohlbacher, Oliver
Merkwirth, Christian
Lengauer, Thomas | 2006 | | A Fully Computational Model for Predicting Percutaneous Drug Absorption
In: Journal of Chemical Information and Modeling [1], 424-429 | Journal Article |
| Lengauer2006d | Svicher, Valentina
Sing, Tobias
Santoro, Maria Mercedes
Forbici, Federica
Rodriguez- Barrios, Fátima
Bertoli, Ada
Beerenwinkel, Niko
Bellocchi, Maria Concetta
Gago, Federigo
d´Arminio Monforte, Antonella
Antinori, Andrea
Lengauer, Thomas
Ceccherini-Silberstein, Francesca
Perno, Carlo-Federico | 2006 | | Involvement of novel HIV-1 reverse transcriptase mutations in the regulation of resistance to nucleoside inhibitors
In: Journal of Virology [80], 7186-7198 | Journal Article |
| Lengauer2006e | Velagapudi, Vidya R.
Wittmann, Christoph
Lengauer, Thomas
Talwar, Priti
Heinzle, Elmar | 2006 | | Metabolic high- content screening of Saccharomyces cerevisiae reveals superior performance of single gene deletion strains
In: Process Biochemistry [41], 2170-2179 | Journal Article |
| Lengauer2006f | Welker, Martin W.
Hofmann, Wolf-Peter
Welsch, Christoph
von Wagner, Michael
Herrmann, Eva
Lengauer, Thomas
Zeuzem, Stefan
Sarrazin, Christoph | 2007 | | Correlation nonstructural (NS)4B amino acid variations with initial viral kinetics during interferon-alpha-based therapy in HCV-1b-infected patients
In: Journal of Viral Hepatitis [14], 338-349 | Journal Article |
| Lengauer2006g | Lehmann, Clara
Däumer, Martin
Bousaad, Ibrahim
Sing, Tobias
Beerenwinkel, Niko
Lengauer, Thomas
Schmeisser, Norbert
Wyen, Christoph
Fätkenheuer, Gerd
Kaiser, Rolf | 2006 | | Stable coreceptor usage of HIV in patients with ongoing treatment failure on HAART
In: Journal of Clinical Virology [37], 300-304 | Journal Article |
| Lengauer2006h | Neumann, Dirk
Kohlbacher, Oliver
Merkwirth, Christian
Lengauer, Thomas | 2006 | | Prediction of percutaneous drug absorption
In: Journal of Chemical Information and Modeling [1], 424-429 | Journal Article |
| Lengauer2007 | Torda, Andrew E.
Lengauer, Thomas | 2006 | | Editorial: Selection of papers of the German Conference of Bioinformatics (GCB) 2005
In: Bioinformatics [22], 1 | Journal Article |
| Lengauer2007e | Antes, Iris
Siu, Shirley Weng-In
Lengauer, Thomas | 2006 | | DynaPred: A structure and sequence based method for the prediction of MHC class I binding peptide sequence and conformations
In: Bioinformatics [22], 16-24 | Journal Article |
| Lengauer2007g | Lengauer, Thomas | 2007 | | Future Trends
In: Bioinformatics - From Genomes to Therapies 3. The Holy Grail: Molecular Function, 1651-1687 | Part of a Book |
| Lengauer2007k | Lengauer, Thomas | 2007 | | Introduction
In: Bioinformatics - From Genomes to Therapies 1. The Building Blocks: Molecular Sequences and Structures, 1-24 | Part of a Book |
| Lengauer2007m | Flockerzi, Aline
Maydt, Jochen
Frank, Oliver
Ruggieri, Alessia
Maldener, Esther
Seifarth, Wolfgang
Medstrand, Patrik
Lengauer, Thomas
Meyerhans, Andreas
Leib-Mosch, Christine
Meese, Eckart
Mayer, Jens | 2007 | | Expression pattern analysis of transcribed HERV sequences is complicated by ex vitvo recombination
In: Retrovirology [4], 39 | Journal Article |
| Lengauer2007m2 | Lengauer, Thomas | 2007 | | Bioinformatik
In: Technologiefüher - Grundlagen, Anwendungen, Trends, 4 | Part of a Book |
| Lengauer2007n | Ketter, Ralf
Urbschat, Steffi
Henn, Wolfram
Feiden, Wolfgang
Beerenwinkel, Niko
Lengauer, Thomas
Steudel, Wolf-Ingo
Zang, Klaus D.
Rahnenführer, Jörg | 2007 | | Application of oncogenetic trees mixtures as a biostatistical model of the clonal cytogenetic evolution of meningiomas
In: International Journal of Cancer [121], 1473-1480 | Journal Article |
| Lengauer2007n2 | Lengauer, Thomas | 2007 | | Strategiekonzept "Molekulare Bioinformatik"
In: Informatikforschung in Deutschland, 9 | Part of a Book |
| Lengauer2007o | Welsch, Christoph
Albrecht, Mario
Maydt, Jochen
Herrmann, E.
Welker, M.W.
Sarrazin, C.
Scheidig, A.
Lengauer, Thomas
Zeuzem, S. | 2007 | | Structural and functional comparison of the non-structural protein 4B of flaviviridae
In: Journal of Molecular Graphics and Modeling [26], 546-557 | Journal Article |
| Lengauer2007p | Kupfer, Bernd
Sing, Tobias
Schüffler, Peter
Hall, Rabea
Kurz, Ralf
McKeown, Astrid
Schneweis, Karl-Eduard
Eberl, Wolfgang
Oldenburg, Johannes
Brackmann, Hans H.
Rockstroh, Jürgen K.
Spengler, Ulrich
Däumer, Martin
Kaiser, Rolf
Lengauer, Thomas
Matz, Bertfried | 2007 | | Fifteen years of env C2V3C3 evolution in six individuals clonally infected with human immunodeficiency virus type 1
In: Journal of Medical Virology [79], 1629-1639 | Journal Article |
| Lengauer2007q | Steffen, Andreas
Thiele, Carolin
Tietze, Simon
Strassnig, Christian
Kämper, Andreas
Lengauer, Thomas
Wenz, Gerhard
Apostolakis, Joannis | 2007 | | Improved cyclodextrin-based receptors for camptothecin by inverse virtual screening
In: Chemistry [13], 6801-6809 | Journal Article |
| Lengauer2007r | Ceccherini-Silberstein, Francesca
Svicher, Valentina
Sing, Tobias
Artese, Anna
Santoro, Maria Mercedes
Forbici, Federica
Bertoli, Ada
Alcaro, Stefano
Palamara, Guido
Monforte, Antonella d'Arminio
Balzarini, Jan
Antinori, Andrea
Lengauer, Thomas
Perno, Carlo Federico | 2007 | | Characterization and structural analysis of novel mutations in human immunodeficiency virus type 1 reverse transcriptase involved in the regulation of restistance to nonnucleoside inhibitors
In: Journal of Virology [81], 11507-11519 | Journal Article |
| Lengauer2007s | Ahlenstiel, G.
Roomp, Kirsten
Däumer, Martin
Nattermann, T.
Vogel, M.
Rockstroh, J.K.
Beerenwinkel, Niko
Kaiser, R.
Nischalke, H.-D.
Sauerbruch, T.
Lengauer, Thomas
Spengler, U. | 2007 | | Selective pressures of HLA genotypes and antiviral therapy on human immunodeficiency virus type 1 sequence mutation at a population level
In: Clinical and Vaccine Immunology [14], 1266-1273 | Journal Article |
| Lengauer2007t | Steffen, Andreas
Karasz, Maximilian
Thiele, Carolin
Lengauer, Thomas
Kämper, Andreas
Wenz, Gerhard
Apostolakis, Joannis | 2007 | | Combined similarity and QSPR virtual screening for guest molecules of $\beta$-cyclodextrin
In: New Journal of Chemistry [31], 1941-1949 | Journal Article |
| Lengauer2009x | Adams, Ben
McHardy, Alice
Lundegaard, C.
Lengauer, Thomas | 2009 | | Viral Bioinformatics
In: Modern Genome Annotation - The BioSapiens Network, 429-452 | Part of a Book |
| Lengauer2010a | Lengauer, Thomas
Altmann, André
Thielen, Alexander
Kaiser, Rolf | 2010 | | Chasing the AIDS Virus
In: Communications of the ACM [53], 66-74 | Journal Article |
| Lengauer2011a | Zazzi, M.
Kaiser, R.
Sönnerborg, A.
Struck, D
Altmann, Andre
Prosperi, M.
Rosen-Zvi, M.
Petroczi, A.
Peres, Y.
Schülter, E.
Boucher, C.A.
Brun-Vezinet, F.
Harrigan, R.
Morris, L.
Obermeier, M.
Perno, C.-F.
Phanuphak, P.
Pillay, D
Shafer, R.W.
Vandamme, A.-M.
Van Laethem, K.
Wensing, A.
Lengauer, Thomas
Incardona, F. | 2011 | | Prediction of Response to Antiretroviral Therapy by Human Experts and by the EuResist Data-Driven Expert System (the EVE study)
In: HIV Medicine [12], 211-218 | Journal Article |
| Lengauer2011b | Däumer, Martin
Kaiser, Rolf
Klein, Rolf
Lengauer, Thomas
Thiele, Bernhard
Thielen, Alexander | 2011 | | Genotypic tropism testing by massively parallel sequencing: qualitative and quantitative analysis
In: BMC Medical Informatics and Decision Making [11], 30,1-30,8 | Electronic Journal Article |
| Lengauer2011c | Lengauer (ed.) | 2011 | | Computermodelle in der Wissenschaft - zwischen Analyse, Vorhersage und Suggestion | Book |
| lengauer2012a | Heger, Eva
Thielen, Alexander
Gilles, Ramona
Obermeier, Martin
Lengauer, Thomas
Kaiser, Rolf
Trapp, Susanna | 2012 | | APOBEC3G/F a one possible driving source for co-receptor switch of the human immunodeficiency virus-1
In: Medical Microbiology and Immunology [201], 7-16 | Journal Article |
| lengauer2012b | Feuerbach, Lars
Halachev, Konstantin
Assenov, Yassen
Mueller, Fabian
Bock, Christoph
Lengauer, Thomas | 2012 | | Analyzing epigenome data in context of genome evolution and human diseases
In: Evolutionary Genomics : Statistical and Computational Methods, Volume 2, 431-467
In: Methods of Molecular Biology [856], 431-467 | Part of a Book |
| lengauer2012c | Welsch, Christoph
Shimakami, Tetsuro
Hartmann, Christoph
Yang, Yan
Domingues, Francisco S.
Lengauer, Thomas
Zeuzem, Stefan
Lemon, Stanley M. | 2012 | | Peptidomimetic Escape Mechanisms Arise via Genetic Diversity in the Ligand-Binding Site of the Hepatitis C Virus NS3/4A Serine Protease
In: Gastroenterology [142], 654-663 | Journal Article |
| lengauer2012d | Bock, Christoph
Lengauer, Thomas | 2012 | | Managing drug resistance in cancer: lessons from HIV therapy
In: Nature Reviews Cancer [12], 494-501 | Journal Article |
| lengauer2012e | Bozek, Katarzyna
Eckhardt, Manon
Sierra, Saleta
Kaiser, Rolf
Kräusslich, Hans-Georg
Müller, Barbara
Lengauer, Thomas | 2012 | | An expanded model of HIV cell entry phenotype based on multi-parameter single-cell data
In: Retrovirology [9], 60.1-60.15 | Journal Article |
| lengauer2012g | Bozek, K.
Lengauer, Thomas
Sierra, S.
Kaiser, Rolf
Domingues, F.S. | 2013 | | Analysis of physicochemical and structural properties determining HIV-1 coreceptor usage
In: PLoS Computational Biology [x], x | Journal Article |
| lengauer2012v | Pfeifer, Nico
Lengauer, Thomas | 2012 | | Improving coreceptor usage prediction in the clinic using hints from next generation sequencing data
In: Bioinformatics [28], i589-i595 | Journal Article |
| Lengauer2012z | Lengauer, Thomas | 2012 | | Bioinformatical Assistance of Selecting Anti-HIV Therapies: Where Do We Stand?
In: Intervirology [55], 108-112 | Journal Article |
| lengauer2013b | Lengauer, Thomas
Bock, Christoph | 2012 | | Managing drug resistance in cancer: lessons from HIV therapy
In: Nature Reviews Cancer [12], 494-501 | Journal Article |
| lengauer2013f | Halachev, Konstantin
Bast, H.
Lengauer, Thomas
Bock, Christoph | 2013 | | Interactive exploration of large genome and epigenome datasets in real time
In: Genome Biology [13], xx | Journal Article |
| lengauer2013g | Simmer, F.
Brinkmann, A.B.
Assenov, Yassen
Matarese, F.
Kaan, A.
Lengauer, Thomas
Bock, Christoph
Colantuoni, V.
Altucci, L.
Stunnenberg, H.G. | 2013 | | Comparative genome-wide DNA methylation analysis of colorectal tumor and matched human tissue
In: Epigenetics [7], 1355-1367 | Journal Article |
| lengauer2013h | Dietz, J.
Schelhorn, Sven-Eric
Fitting, D.
Mihm, U.
Susser, S.
Welker, M.-W.
Füller, C.
Däumer, M.
Teuber, G.
Wedemeyer, H.
Berg, T.
Lengauer, Thomas
Z., Stefan
Herrmann, E.
Sarrazin, C. | 2013 | | Deep sequencing reveals mutagenic effects of ribavirin during monotherapy of HCV genotype 1-infected patients
In: Journal of Virology [87], 6172-6181 | Journal Article |
| lengauer2013j | Bhadra, T.
Battacharya, M.
Feuerbach, L.
Lengauer, Thomas
Bandyopadhyay, S. | 2013 | | DNA Methylation Patterns Facilitate the Identification of Transcription Start Sites: A Brain-specofoc Study
In: PLOSONE [8], xx | Journal Article |
| lengauer2013k | Beggel, Bastian
Münk, C.
Däumer, M.
Hauck, K.
Häussinger, D.
Lengauer, Thomas
Ehrhardt, A. | 2013 | | Full genome ultra-deep pyrosequencing associates G-to-A-hypermutation of the hepatitis B virus genome with the natural progression of hepatitis B
In: Journal of Viral Hepatitis [12], 882-889 | Journal Article |
| lengauer2013l | Tolosi, Laura
Theißen, J.
Halachev, Konstantin
Hero, B.
Berthold, F.
Lengauer, Thomas | 2013 | | A method for finding consensus breakpoints in the cancer genome from copy number data
In: Bioinformatics [29], 1793-1800 | Journal Article |
| lengauer2013m | Schelhorn, Sven-Eric
Fischer, M.
Tolosi, Laura
Altmüller, J.
Nürnberg, P.
Pfister, H.
Lengauer, Thomas
Berthold, F. | 2013 | | Sensitive detection of viral transcripts in human tumor transcriptomes
In: PLOS Computational Biology [9], xx | Journal Article |
| LengauerBioInf1_2007 | Lengauer (ed.) | 2007 | | Bioinformatics - From Genomes to Therapies 1. The Building Blocks: Molecular Sequences and Structures | Book |
| LengauerBioInf2_2007 | Lengauer (ed.) | 2007 | | Bioinformatics - From Genomes to Therapies 2. Getting at the Inner Workings: Molecular Interactions | Book |
| LengauerBioInf3_2007 | Lengauer (ed.) | 2007 | | Bioinformatics - From Genomes to Therapies 3. The Holy Grail: Molecular Function | Book |
| LengauerISMB2007 | Lengauer, Rost, Schuster (ed.) | 2007 | | Proceedings ISMB2007 | Proceedings |
| LengauerKaiser2009a | Lengauer, Thomas
Kaiser, Rolf | 2009 | | Computerjagd auf das AIDSVIRUS
In: Spektrum der Wissenschaft [08], 62-67 | Journal Article |
| LengauerLenhof2002a | Lengauer, Lenhof (ed.) | 2002 | | Proceedings of the European Conference on Computational Biology (ECCB 2002) | Proceedings |
| LengauerNatRev2006 | Lengauer, Thomas
Sing, Tobias | 2006 | | Bioinformatics-assisted anti-HIV therapy
In: Nature Reviews Microbiology [4], 790-797 | Journal Article |
| LengauerSander2007 | Lengauer, Thomas
Sander, Oliver
Sierra, Saleta
Thielen, Alexander
Kaiser, Rolf | 2007 | | Bioinformatics prediction of HIV coreceptor usage
In: Nature Biotechnology [25], 1407-1410 | Journal Article |
| LengauerSing2009 | Trignetti, Maria
Sing, Tobias
Svicher, Valentina
Santoro, Maria Mercedes
Forbici, Federica
D'Arrigo, Roberta
Bellocchi, Maria Concetta
Santoro, Mario
Marconi, Patrizia
Zaccarelli, Mauro
Trotta, Maria Paola
Bellagamba, Rita
Narciso, Pasquale
Antinori, Andrea
Lengauer, Thomas
Perno, Carlo Federico
Ceccherini-Silberstein, Francesca | 2009 | | Dynamics of NRTI resistance mutations during therapy interruption
In: AIDS Research and Human Retroviruses [25], 57-64 | Journal Article |
| lengauerwelsch2010 | Mihm, Ulrike
Hofmann, W.P.
Welsch, Christoph
Polta, A.
Lengauer, Thomas
Zeuzem, Stefan
Sarrazin, Christoph
Herrmann, E. | 2010 | | Effect of ribavirin on the frequency of RNAse L cleavage sites within the hepatitis C viral genome
In: Journal of Viral Hepatitis [17], 217-221 | Journal Article |
| LengauerZeuzem2007 | Lengauer, Thomas
Albrecht, Mario
Sarrazin, C.
Mihm, U.
Herrmann, E.
Welsch, Christoph
Sarrazin, U.
Traver, S.
Zeuzem, S. | 2005 | | Clinical significance of in vitro replication-enhancing mutations of the hepatitis C virus (HCV) replicon in patients with chronic HCV infection.
In: Journal of Infectious Diseases [192], 1710-1719 | Journal Article |
| LengauerZeuzem2009 | Mihm, Ulrike
Ackermann, Oliver
Welsch, Christoph
Herrmann, Eva
Hofmann, Wolf Peter
Grigorian, Natalia
Welker, Martin Walter
Lengauer, Thomas
Zeuzem, Stefan
Sarrazin, Christoph | 2009 | | Clinical relevance of the 2'-5'-oligoadenylate synthetase/RNase L system for treatment response in chronic hepatitis C
In: Journal of Hepatology [50], 49-58 | Journal Article |
| LengauerZhu2006 | Lengauer, Thomas
Domingues, F.S.
Sommer, Ingolf
Zhu, Hongbo | 2006 | | Analysis and prediction of protein-protein-interaction types
In: BMC Bioinformatics [7], - | Journal Article |
| LengKaiSie2009 | Lengauer, Thomas
Sierra, S.
Kaiser, Rolf | 2009 | | Resistenzbestimmung
In: MMW Fortschritte in der Medizin [151], 74-75 | Journal Article |
| Lenguaer2004e | Hannemann, A.
Schön, J.C.
Jansen, M.
Putz, H.
Lengauer, Thomas | 2004 | | Modelling amorphous Si3B3N7: Structure and elastic properties
In: Physical Review [B 70], 144201-144201 | Journal Article |
| Liu2007 | Liu, Fang
Tostesen, Eivind
Sundet, Jostein K.
Jenssen, Tor-Kristian
Bock, Christoph
Jerstad, Geir Ivar
Thilly, William G.
Hovig, Eivind | 2007 | | The human genomic melting map
In: PLoS Computational Biology [3], e93 | Journal Article |
| Loi2010a | Loi, Luu Phuc | 2010 | | Identifying discriminative motifs for molecular function of proteins
Universität des Saarlandes | Thesis - Masters thesis |
| LowDong2007 | Low, Andrew J.
Dong, Winnie
Chan, Dennison
Sing, Tobias
Swanstrom, Ronald
Jensen, Mark
Pillai, Satish
Good, Benjamin
Harrigan, P. Richard | 2007 | | Current V3 genotyping algorithms are inadequate for predicting X4 co-receptor usage in clinical isolates
In: AIDS [21], F19-F26 | Journal Article |
| Lutsik2010a | Lutsik, Pavlo | 2010 | | Processing of high-throughput DNA methylation data
Universität des Saarlandes | Thesis - Masters thesis |
| LutsikFeuerbach2011 | Lutsik, Pavlo
Feuerbach, Lars
Arand, Julia
Lengauer, Thomas
Walter, Jörn
Bock, Christoph | 2011 | | BiQ Analyzer HT: locus-specific analysis of DNA methylation by high-throughput bisulfite sequencing
In: Nucleic Acids Research [39], W551-W556 | Journal Article |
| Mangels2009 | Mangels, Miriam | 2009 | | In Silico Models for the Prediction of Metabolism by Cytochrome P450 Enzymes
Universität des Saarlandes | Thesis - Bachelor thesis |
| Maydt2002a | Maydt, Jochen
Lienhart, Rainer | 2002 | | A Fast Method for Training Support Vector Machines With a Very Large Set of Linear Features
In: Proceedings of the International Conference on Multimedia and Expo, 309-312 | Proceedings Article |
| Maydt2002b | Lienhart, Rainer
Maydt, Jochen | 2002 | | An Extended Set of Haar-like Features for Rapid Object Detection
In: Proceedings of the International Conference on Image Processing, 900-903 | Proceedings Article |
| Maydt2006 | Maydt, Jochen
Lengauer, Thomas | 2006 | | Recco: recombination analysis using cost optimization
In: Bioinformatics [22], 1064-1071 | Journal Article |
| maydt2008 | Maydt, Jochen | 2008 | | Analysis of recombination in Molecular Sequence Data
Universität des Saarlandes | Thesis - PhD thesis |
| Mayr2007 | Mayr, Gabriele
Domingues, Francisco S.
Lackner, Peter | 2007 | | Comparative Analysis of Protein Structure Alignments
In: BMC Structural Biology [7], 1 | Journal Article |
| McGovern2010 | McGovern, Rachel A
Thielen, Alexander
Mo, Theresa
Dong, Winnie
Woods, Conan K
Chapman, Douglass
Lewis, Marilyn
James, Ian
Heera, Jayvant
Valdez, Hernan
Harrigan, P Richard | 2010 | | Population-based V3 genotypic tropism assay: a retrospective analysis using screening samples from the A4001029 and MOTIVATE studies
In: AIDS [24], 2517-2525 | Journal Article |
| McHardy2009c | McHardy, Alice C.
Adams, Ben | 2009 | | The role of genomics in tracking the evolution of influenza A virus
In: PLoS Pathog [5], e1000566 | Electronic Journal Article |
| Meiser2005 | Meiser, Ina | 2005 | | Identification of functionally important regions in cytochrome P450 systems and a systematic analysis of various CYP P450 homology models
Universität des Saarlandes | Thesis - Bachelor thesis |
| Merkwirth2003ECCTD | Merkwirth, Christian
Ogorzalek, Maciej
Wichard, Jörg Daniel | 2003 | | Stochastic Gradient Descent Training of Ensembles of DT-CNN Classifiers for Digit Recognition
In: Proceedings of the 16th European Conference on Circuit Theory and Design ECCTD'03, 337-341 | Proceedings Article |
| Merkwirth2004a | Merkwirth, Christian
Bröcker, J.
Ogorzalek, Maciej
Wichard, J.D. | 2004 | | Finite iteration DT-CNN - new design and operation principles
In: Proceedings (ISCAS-04) : 2004 IEEE International Symposium on Circuits and Systems. - Vol. 5, Blind signal processing, computer-aided network design, invited sessions, neural sytems and applications, power systems and power electronic circuits, 504-507 | Proceedings Article |
| Merkwirth2004b | Merkwirth, Christian
Mauser, H.
Schulz-Gasch, T.
Roche, O.
Stahl, M.
Lengauer, Thomas | 2004 | | Ensemble methods for classification in cheminformatics
In: Journal of Chemical Information and Modeling [44], 1971-1978 | Journal Article |
| Merkwirth2004d | Wichard, J.D.
Ogorzalek, Maciej
Merkwirth, Christian
Bröcker, J. | 2004 | | Finite iteration DT-CNN with stationary templates
In: Proceedings of the 8th IEEE International Workshop on Cellular Neural Networks and their Applications (CNNA 2004), 459-464 | Proceedings Article |
| Mikeska2007 | Mikeska, Thomas
Bock, Christoph
El-Maarri, Osman
Hübner, Anika
Ehrentraut, Denise
Schramm, Johannes
Felsberg, Jörg
Kahl, Philip
Büttner, Reinhard
Pietsch, Torsten
Waha, Andreas | 2007 | | Optimization of Quantitative MGMT Promoter Methylation Analysis Using Pyrosequencing and Combined Bisulfite Restriction Analysis
In: Journal of Molecular Diagnostics [9], 368-381 | Journal Article |
| Moores2008 | Moores, Andrew
Thielen, Alexander
Dong, Winnie
Low, Andrew J.
Woods, Conan
Jensen, Mark
Wynhoven, Brian
Chan, Dennison
Glascock, Christopher
Harrigan, P Richard | 2008 | | Improved detection of X4 virus by V3 genotyping: application to plasma RNA and proviral DNA
In: Antiviral Therapy, A99 | Poster |
| Moser2009 | Moser, Dirk
Ekawardhani, Savira
Kumsta, Robert
Palmason, Haukur
Bock, Christoph
Athanassiadou, Zoi
Lesch, Klaus-Peter
Meyer, Jobst | 2009 | | Functional Analysis of a Potassium-Chloride Co-Transporter 3 (SLC12A6) Promoter Polymorphism Leading to an Additional DNA Methylation Site
In: Neuropsychopharmacology [34], 458-467 | Journal Article |
| Mueller2006 | Müller, Oliver | 2007 | | Using Shape Retrieval Techniques for Identifying Similar Protein Binding Sites
Universität des Saarlandes | Thesis - Masters thesis |
| Mueller2009 | Müller, Fabian | 2009 | | Assessing Antibody Neutralization of HIV-1 as an Initial Step in the Search for gp160-based Immunogens
Universität des Saarlandes | Thesis - Masters thesis |
| MuellerMaster2012 | Müller, Joachim | 2012 | | Extracting pathways from biological networks incorporating omics data, introducing a webinterface for KeyPathwayMiner
Universität des Saarlandes | Thesis - Masters thesis |
| NB2003a | Beerenwinkel, Niko | 2004 | | Methoden zur Interpretation genotypischer Resistenztests
In: Resistenz in der HIV-Therapie : Diagnostik und Management, 66-68 | Part of a Book |
| NB2003b | Beerenwinkel, Niko | 2004 | | Das Arevir-Projekt : neue Wege zur Optimierung von Anti-HIV-Therapien
In: Resistenz in der HIV-Therapie : Diagnostik und Management, 94-98 | Part of a Book |
| Nebot2011 | Nebot, Victoria
Ye, Min
Albrecht, Mario
Eom, Jae-Hong
Weikum, Gerhard | 2011 | | DIDO: a disease-determinants ontology from web sources
In: Proceedings of the 20th International Conference on World Wide Web (WWW 2011), 237-240 | Proceedings Article |
| Nickels2005a | Nickels, Stefan | 2005 | | Generating Molecular Hashcodes for
Finding Duplicates in Virtual Screening
Libraries
Universität des Saarlandes | Thesis - Bachelor thesis |
| Obermeier2008 | Obermeier, Martin
Sichtig, Nadine
Braun, Patrick
Däumer, Martin
Walter, Hauke
Noah, Christian
Wolf, Eva
Müller, Harm
Stürmer, Martin
Kaiser, Rolf
Thielen, Alexander | 2008 | | Determination of HIV-1 coreceptor usage in German patients - comparison of genotypic methods with the TROFILE phenotypic assay
In: Antiviral Therapy, A112 | Poster |
| Obermeier2008Glasgow | Obermeier, Martin
Berg, Thomas
Sichtig, Nadine
Braun, Patrick
Däumer, Martin
Walter, Hauke
Noah, Christian
Wolf, Eva
Müller, Harm
Stürmer, Martin
Thielen, Alexander
Kaiser, Rolf | 2008 | | Determination of HIV-1 co-receptor usage in German patients – comparison of genotypic methods with the TROFILE® phenotypic assay
In: Abstracts of the Ninth International Congress on Drug Therapy in HIV Infection, 123 | Poster |
| Obermeier2012 | Obermeier, Martin
Pironti, Alejandro
Berg, Thomas
Braun, Patrick
Däumer, Martin
Eberle, Josef
Ehret, Robert
Kaiser, Rolf
Kleinkauf, Niels
Korn, Klaus
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Sommer, Ingolf
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Universität des Saarlandes | Thesis - Masters thesis |
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Rahnenführer, Jörg
Albrecht, Mario
Lengauer, Thomas
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Universität des Saarlandes | Thesis - PhD thesis |
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Rahnenführer, Jörg
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Oette, Mark
Balduin, Melanie
Reuter, Stefan
Rockstroh, Jürgen
Fätkenheuer, Gerd
Esser, Stefan
Lengauer, Thomas
Agacfidan, Ali
Pfister, Herbert
Kaiser, Rolf
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Wang, Zheng
Cheng, Jianlin
Fang, Hai
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T\"{o}r\"{o}nen, Petri
Nokso-Koivisto, Jussi
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Buchan, Daniel W A
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Ka\ss ner, Rebecca
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H\"{o}nigschmid, Peter
Hopf, Thomas A
Kaufmann, Stefanie
Kiening, Michael
Krompass, Denis
Landerer, Cedric
Mahlich, Yannick
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Shatkay, Hagit
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Sommer, Ingolf
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Zimmer, Ralf
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Universität des Saarlandes | Thesis - Bachelor thesis |
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Universität des Saarlandes | Thesis - Masters thesis |
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Universität des Saarlandes | Thesis - PhD thesis |
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Universität des Saarlandes | Thesis - Bachelor thesis |
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| talwar2008 | Talwar, Priti | 2008 | | Development of Computational Methods for Metabolic Network Analysis based on Metabolomics Data
Universität des Saarlandes | Thesis - PhD thesis |
| Thielen2006 | Thielen, Alexander | 2006 | | Prediction of linear B-cell epitopes and MHC class II binding peptides
Eberhardt-Karls-Universität Tübingen | Thesis - Masters thesis |
| Thielen2008EDRW | Thielen, Alexander
Sichtig, Nadine
Braun, Patrick
Däumer, Martin
Walter, Hauke
Noah, Christian
Wolf, Eva
Müller, Harm
Stürmer, Martin
Lengauer, Thomas
Kaiser, Rolf
Obermeier, Martin | 2009 | | Performance of genotypic coreceptor measurement using geno2pheno[coreceptor] in B- and non-B HIV subtypes in a large cohort of therapy-experienced patients in Germany
In: Reviews in Antiviral Therapy, 99-99 | Poster |
| Thielen2008Entry | Thielen, Alexander
Kaiser, Rolf
Lengauer, Thomas | 2008 | | Improving HIV-1 coreceptor usage prediction from genotype with regions outside of V3
In: Reviews in Antiviral Therapy, 81-82 | Poster |
| Thielen2008IDRW | Thielen, Alexander
Harrigan, P Richard
Low, Andrew J.
Moores, A
Altmann, Andre
Bozek, Kasia
Heger, Eva
Sichtig, Nadine
Kaiser, Rolf
Lengauer, Thomas | 2008 | | Improved genotypic prediction of HIV-1 coreceptor usage by incorporating V2 loop sequence variation
In: Antiviral Therapy, A100 | Poster |
| Thielen2009IDRW | Thielen, Alexander
Altmann, André
Bogojeska, Jasmina
Kaiser, Rolf
Lengauer, Thomas | 2009 | | Estimating evolutionary pathways to 7CXCR4 usage from cross-sectional data
In: Abstracts presented at the XVIII International HIV Drug Resistance Workshop : Basic Principles & Clinical Implications, A16-A16 | Poster |
| Thielen2010 | Thielen, Alexander
Sichtig, Nadine
Kaiser, Rolf
Lam, Jeffrey
Harrigan, P. Richard
Lengauer, Thomas | 2010 | | Improved prediction of HIV-1 coreceptor usage with sequence information from the second hypervariable loop of gp120
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| Thielen2010EDRW | Thielen, Alexander
Lengauer, Thomas
Harrigan, P Richard
Swenson, Luke
Dong, Winnie WY
McGovern, Rachel A
Lewis, Marilyn
James, Ian
Heera, Jayvant
Valdez, Hernan | 2010 | | Mutations within GP41 are correlated with coreceptor tropism but do not substantially improve coreceptor usage prediction
In: Reviews in Antiviral Therapy & Infectious Diseases, 47-47 | Poster |
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Lengauer, Thomas
Swenson, Luke C
Dong, Winnie W.Y.
McGovern, Rachel A
Lewis, Marilyn
James, Ian
Heera, Jayvant
Valdez, Hernan
Harrigan, P Richard | 2011 | | Mutations in gp41 are correlated with coreceptor tropism but do not improve prediction methods substantially
In: Antiviral Therapy [16], 319-328 | Journal Article |
| Thielen2011 | Thielen, Alexander
Lengauer, Thomas | 2012 | | Geno2pheno[454]: A Web Server for the Prediction of HIV-1 Coreceptor Usage from Next-Generation Sequencing Data
In: Intervirology [55], 113-117 | Journal Article |
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Universität des Saarlandes | Thesis - PhD thesis |
| Tolosi2006 | Tolosi, Laura | 2006 | | Analysis of Array CGH Data for the Estimation of Genetic Tumor Progression
Universität des Saarlandes | Thesis - Masters thesis |
| tolosi2009 | Sos, Martin L.
Michel, Kathrin
Zander, Thomas
Weiss, Jonathan
Frommolt, Peter
Pfeifer, Martin
Li, Danan
Ullrich, Roland
Koker, Mirjam
Fischer, Florian
Shimamura, Takeshi
Rauh, Daniel
Mermel, Craig
Fischer, Stefanie
Stückrath, Isabel
Heynck, Stefanie
Beroukhim, Rameen
Lin, William
Winckler, Wendy
Shah, Kinjal
LaFramboise, Thomas
Moriarty, Whei F.
Hanna, megan
Tolosi, Laura
Rahnenführer, Jörg
Verhaak, Roel
Chiang, Derek
Getz, Gad
Hellmich, Martin
Wolf, Jürgen
Girard, Luc
Peyton, Michael
Weir, Barbara A.
Chen, Tzu-Hsiu
Greulich, Heidi
Barretina, Jordi
Shapiro, Geoffrey I.
Garraway, Levi A.
Gazdar, Adi F.
Minna, John D.
Meyerson, Matthew
Wong, Kwok-Kin
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| Tolosi2011 | Tolosi, Laura
Lengauer, Thomas | 2011 | | Classification with correlated features: unreliability of feature ranking and solutions
In: Bioinformatics [27], 1986-1994 | Journal Article |
| Tolosi2012th | Tolosi, Laura | 2012 | | Finding Regions of Aberrant DNA Copy Number Associated With Tumor Phenotype
Universität des Saarlandes | Thesis - PhD thesis |
| Trajkovski2004 | Trajkovski, Igor | 2004 | | Analysis of protein binding pocket flexibility
Universität des Saarlandes | Thesis - Masters thesis |
| Verheyen2006 | Verheyen, Jens
Litau, Elena
Sing, Tobias
Däumer, Martin
Balduin, Melanie
Oette, Mark
Fätkenheuer, Gerd
Rockstroh, Jürgen K.
Schuldenzucker, Ulrike
Hoffmann, Daniel
Pfister, Herbert
Kaiser, Rolf | 2006 | | Compensatory mutations at the HIV cleavage sites p7/p1 and p1/p6-gag in therapy-naive and therapy-experienced patients
In: Antiviral Therapy [11], 879-887 | Journal Article |
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Altmann, Andre
Knops, Elena
Schülter, Eugen
Sichtig, Nadine
Reuter, Stefan
Fätkenheuer, Gerd
Pfister, Herbert
Kaiser, Rolf | 2008 | | Relevance of HIV gag cleavage site mutations in failures of protease inhibitor therapies
In: Antiviral Therapy, A53 | Poster |
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out compounds with toxic, reactive
and unsuitable functional groups
Universität des Saarlandes | Thesis - Bachelor thesis |
| Volkamer2007 | Volkamer, Andrea | 2007 | | Automated generation of pharmacophore type constraints to improve FlexX docking
Universität des Saarlandes | Thesis - Masters thesis |
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Sommer, Ingolf
Zimmer, Ralf | 2003 | | Profile-Profile Alignment: A Powerful Tool For Protein Structure Prediction
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Universität des Saarlandes | Thesis - Bachelor thesis |
| Weimann2011a | Weimann, Aaron | 2011 | | Functional Profiling in Metagenomics
Universität des Saarlandes | Thesis - Masters thesis |
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Universität des Saarlandes | Thesis - Masters thesis |
| Weinhold2008 | Weinhold, Nils
Sander, Oliver
Domingues, Francisco S.
Lengauer, Thomas
Sommer, Ingolf | 2008 | | Local function conservation in sequence and structure space
In: PLoS Computational Biology [4], e1000105 | Journal Article |
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Universität des Saarlandes | Thesis - Bachelor thesis |
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Universität des Saarlandes | Thesis - Masters thesis |
| Weisser2010a | Weisser, Hendrik
Altmann, André
Sierra, Saleta
Incardona, Francesca
Struck, Daniel
Sönnerborg, Anders
Kaiser, Rolf
Zazzi, Maurizio
Tschochner, Monika
Walter, Hauke
Lengauer, Thomas | 2010 | | Only Slight Impact of Predicted Replicative Capacity for Therapy Response Prediction
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Welsch, Christoph
Ochs, D.
Hofmann, W. P.
Herrmann, E.
Piiper, A.
Hartmann, R. W.
Zeuzem, S.
Sarrazin, C.
Kronenberger, Bernd | 2011 | | Comparison of Envelope 2 CD81 binding regions in PBMC-derived versus serum-derived hepatitis C virus isolates: higher conservation of CD81 region 2 in PBMC isolates
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| Welsch2011 | Hofmann, Wolf Peter
Chung, Tje Lin
Osbahr, Carola
Susser, Simone
Karey, Ursel
Mihm, Ulrike
Welsch, Christoph
Lötsch, Jörn
Sarrazin, Christoph
Zeuzem, Stefan
Herrmann, Eva | 2011 | | Impact of ribavirin on HCV replicon RNA decline during treatment with interferon-α and the protease inhibitors boceprevir or telaprevir
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Schweizer, Sabine
Shimakami, Testsuro
Domingues, Francisco S.
Kim, Seungtaek
Lemon, Stanley, M.
Antes, Iris | 2012 | | Ketoamide Resistance and Hepatitis C Virus Fitness in Val55 Variants
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Rahnenführer, Jörg
Beerenwinkel, Niko
Strowitzki, Martin
Feiden, Wolfgang
Hartmann, Christian
Lengauer, Thomas
Stockhammer, Florian
Zang, Klaus D.
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Steudel, Wolf-Ingo
von Deimling, Andreas
Urbschat, Steffi | 2005 | | Patients with high grade gliomas harboring delections of chromosomes 9p and 10q benefit from temozolomide treatment
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Emig, Dorothea
Lange, Sita
Rahmann, Sven
Albrecht, Mario
Morris, John H.
Böcker, Sebastian
Stoye, Jens
Baumbach, Jan | 2010 | | Partitioning biological data with transitivity clustering
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Emig, Dorothea
Truss, Anke
Albrecht, Mario
Böcker, Sebastian
Baumbach, Jan | 2011 | | Comprehensive cluster analysis with Transitivity Clustering
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Bock, Christoph
Müller, Fabian
Sun, Deqiang
Meissner, Alexander
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Müller, Fabian
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Meissner, Alexander
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Universität des Saarlandes | Thesis - Bachelor thesis |
| Yamanishir2011 | Yamanishi, Yoshihiro
Pauwels, Edouard
Saigo, Hiroto
Stovent, Veronique | 2011 | | Extracting Sets of Chemical Substructures and Protein Domains Governing Drug-Target Interactions
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Beerenwinkel, Niko
Rahnenführer, Jörg
Lengauer, Thomas | 2006 | | Model Selection for Mixtures of Mutagenetic Trees
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Universität des Saarlandes | Thesis - Masters thesis |
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Fillmore, Christine M.
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Gludish, David W.
Chou, alan
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Zamponi, Raffaella
Gazit, Roi
Bock, Christoph
Jäger, Natalie
Smith, Zachary D.
Kim, Tae-min
Saunders, Arven H.
Wong, Janice
Lee, Joo-Hyeon
Roach, Rebecca R.
Rossi, Derrick J.
Meissner, Alex
Gimelbrant, Alexander A.
Park, Peter J.
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Kaiser, Rolf
Sönnerborg, Anders
Struck, Daniel
Altmann, Andre
Prosperi, Mattia C. F.
Rosen-Zvi, Michal
Petroczi, Andrea
Peres, Yardena
Schülter, Eugen
Boucher, Charles
Brun-Vezinet, Francoise
Harigan, Richard
Morris, Lynn
Obermeier, Martin
Perno, Federico
Shafer, Robert
Vandamme, Anne-Mieke
van Laethem, Kristel
Wensing, Annemarie
Lengauer, Thomas
Incardona, Francesca | 2010 | | Prediction of Response to Antiretroviral Therapy by Human Experts and by the EuResist Data-Driven Expert System (the EVE Study)
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Incardona, Francesca
Rosen-Zvi, Michal
Prosperi, Mattia
Lengauer, Thomas
Altmann, Andre
Sonnerborg, Anders
Lavee, Tamar
Schülter, Eugen
Kaiser, Rolf | 2012 | | Predicting Response to Antiretroviral Treatment by Machine Learning:
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Aharoni, Ehud
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Baszó, Fulop
Bidgood, Penny
Borgulya, Gabór
Denholm-Prince, J
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Kaiser, Rolf
Kent, Carmel
Lengauer, Thomas
Nepusz, T
Neuvirth, Hanni
Peres, Yardena
Petroczi, Andrea
Prosperi, Mattia
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Rosen-Zvi, Michal
Schülter, Eugen
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Sonnerborg, Andras
Thompson, R
Ulivi, G
Zalány, L
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Universität des Saarlandes | Thesis - Bachelor thesis |
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Rohde, Christian
Tierling, Sascha
Jurkowski, Tomasz P.
Bock, Christoph
Santacruz, Diana
Ragozin, Sergey
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Sommer, Ingolf
Lengauer, Thomas
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Universität des Saarlandes | Thesis - PhD thesis |
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Müller, Fabian
Liao, Jing
Zhang, Yingying
Gu, Hongcang
Bock, Christoph
Boyle, Patrick
Epstein, Charles B.
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Lengauer, Thomas
Gnirke, Andreas
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Müller, Fabian
Donaghey, Julie
Tsai, Linus T.-Y.
Kohlbacher, Oliver
De Jager, Philip L.
Rosen, Evan D.
Bennett, David A.
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Gnirke, Andreas
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Universität des Saarlandes | Thesis - Bachelor thesis |
| Zotenko2008 | Zotenko, Elena
Mestre, Julian
O'Leary, Dianne
Przytycka, Teresa | 2008 | | Why Do Hubs in the Yeast Protein Interaction Network Tend To Be Essential: Reexamining the Connection between the Network Topology and Essentiality
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Universität des Saarlandes | Thesis - Masters thesis |
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Universität des Saarlandes | Thesis - PhD thesis |
