Publications
MPI-INF D3 Publications
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| | 2012 | [Oette, Mark] [Schulter, Eugen] [Rosen-Zvi, Michal] [Peres, Yardena] [Zazzi, Maurizio] [Sonnerborg, Anders] [Struck, Daniel] Altmann, Andre [Kaiser, Rolf] | Efficacy of antiretroviral therapy switch in HIV-infected patients: A 10-year analysis of the EuResist cohort In: Intervirology [55], 160-166 | Journal Article | | |||
| 2012 | [Schuelter, Eugen] [Lübcke, Nadine] [Jensen, Björn] [Zazzi, Maurizio] [Sönnerborg, Anders] Lengauer, Thomas [Incardona, Francesca] [Camacho, Richardo] [Schmit, J] [Clotet, Bonaventura] [Kaiser, Rolf] Pironti, Alejandro | Etravirine in protease inhibitor-free antiretroviral combination therapies In: Journal of the International AIDS Society, 155-156 | Poster | | |||||
| | 2012 | Bogojeska, Jasmina [Stöckel, Daniel] [Zazzi, Maurizio] [Kaiser, Rolf] [Incardona, Francesca] [Rosen-Zvi, Michal] Lengauer, Thomas | History-alignment models for bias-aware prediction of virological response to HIV combination therapy In: Proceedings of the Fifteenth International Conference on Artificial Intelligence and Statistics (AISTATS 2012), 118-126 | Proceedings Article | | |||
| 2012 | [Zazzi, Maurizio] [Incardona, Francesca] [Rosen-Zvi, Michal] [Prosperi, Mattia] Lengauer, Thomas Altmann, Andre [Sonnerborg, Anders] [Lavee, Tamar] [Schülter, Eugen] [Kaiser, Rolf] | Predicting Response to Antiretroviral Treatment by Machine Learning: The EuResist Project In: Intervirology [55], 123-127 | Journal Article | | |||||
| | 2011 | Lawyer, Glenn Altmann, André Thielen, Alex [Zazzi, Maurizio] [Sönnerborg, Anders] Lengauer, Thomas | HIV-1 mutational pathways under multidrug therapy In: AIDS Research and Therapy [8], 1-13 | Journal Article | | |||
| 2010 | [Prosperi, Mattia C. F.] [Rosen-Zvi, Michal] Altmann, Andre [Zazzi, Maurizio] [Di Giambenedetto, Simona] [Kaiser, Rolf] [Schülter, Eugen] [Struck, Daniel] [Sloot, Peter] [van de Vijver, David A.] [Vandamme, Anne-Mieke] [Sönnerborg, Anders] | Antiretroviral Therapy Optimisation without Genotype Resistance Testing: A Perspective on Treatment History Based Models In: PLoS ONE [5], e13753,1-e13753,8 | Electronic Journal Article | | |||||
| | 2010 | Weisser, Hendrik Altmann, André [Sierra, Saleta] [Incardona, Francesca] [Struck, Daniel] [Sönnerborg, Anders] [Kaiser, Rolf] [Zazzi, Maurizio] [Tschochner, Monika] [Walter, Hauke] Lengauer, Thomas | Only Slight Impact of Predicted Replicative Capacity for Therapy Response Prediction In: PLoSOne [5], e9044,1-e9044,10 | Electronic Journal Article | | |||
| 2010 | [Zazzi, Maurizio] [Kaiser, Rolf] [Sönnerborg, Anders] [Struck, Daniel] Altmann, Andre [Prosperi, Mattia C. F.] [Rosen-Zvi, Michal] [Petroczi, Andrea] [Peres, Yardena] [Schülter, Eugen] [Boucher, Charles] [Brun-Vezinet, Francoise] [Harigan, Richard] [Morris, Lynn] [Obermeier, Martin] [Perno, Federico] [Shafer, Robert] [Vandamme, Anne-Mieke] [van Laethem, Kristel] [Wensing, Annemarie] Lengauer, Thomas [Incardona, Francesca] | Prediction of Response to Antiretroviral Therapy by Human Experts and by the EuResist Data-Driven Expert System (the EVE Study) In: HIV Medicine [Early View], 1-8 | Electronic Journal Article | | |||||
| | 2009 | Altmann, André Sing, Tobias [Vermeiren, Hans] [Winters, Bart] [Van Craenenbroeck, Elke] [Van der Borght, Koen] [Rhee, Soo-Yon] Shafer, Robert W. [Schülter, Eugen] [Kaiser, Rolf] [Peres, Yardena] [Sönnerborg, Anders] Fessel, W. Jeffrey [Incardona, Francesca] [Zazzi, Maurizio] [Bacheler, Lee] [Van Vlijmen, Hermann] Lengauer, Thomas | Advantages of Predicted Phenotypes and Statistical Learning Models in Inferring Virological Response to Antiretroviral Therapy from HIV Genotype In: Antiviral Therapy [14], 273-283 | Journal Article | | |||
| 2009 | [Prosperi, Mattia C. F.] Altmann, André [Rosen-Zvi, Michal] [Aharoni, Ehud] [Gabor, Borgulya] [Fulop, Bazso] [Sonnerborg, Anders] [Schulter, Eugen] [Struck, Daniel] [Ulivi, Giovanni] [Vandamme, Anne-Mieke] [Vercauteren, Jurgen] [Zazzi, Maurizio] | Investigation of expert rule bases, logistic regression, and non-linear machine learning techniques for predicting response to antiretroviral treatment In: Antiviral Therapy [14], 433-442 | Journal Article | | |||||
| | 2009 | Altmann, André [Däumer, Martin] [Beerenwinkel, Niko] [Peres, Yardena] [Schülter, Eugen] Büch, Joachim [Rhee, Soo-Yon] [Sönnerborg, Anders] [Fessel, W. Jeffrey] [Shafer, Robert W.] [Zazzi, Maurizio] [Kaiser, Rolf] Lengauer, Thomas | Predicting the Response to Combination Antiretroviral Therapy: Retrospective Validation of geno2pheno-THEO on a Large Clinical Database In: The Journal of Infectious Diseases [199], 999-1006 | Journal Article | | |||
| 2008 | Altmann, Andre [Rosen-Zvi, Michal] [Prosperi, Mattia] [Aharoni, Ehud] [Neuvirth, Hani] [Sönnerborg, Anders] [Schülter, Eugen] Büch, Joachim [Struck, Daniel] [Peres, Yardena] [Incardona, Francesca] [Kaiser, Rolf] [Zazzi, Maurizio] Lengauer, Thomas | Comparison of Classifier Fusion Methods for Predicting Response to Anti HIV-1 Therapy In: PLoS ONE [3], e3470 | Journal Article | | |||||
| | 2008 | [Rosen-Zvi, Michal] Altmann, Andre [Prosperi, Mattia] [Aharoni, Ehud] [Neuvirth, Hani] [Sönnerborg, Anders] [Schülter, Eugen] [Struck, Daniel] [Peres, Yardena] [Incardona, Francesca] [Kaiser, Rolf] [Zazzi, Maurizio] Lengauer, Thomas | Selecting anti-HIV therapies based on a variety of genomic and clinical factors In: Proceedings of the 16th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB 2008), i399-406 | Proceedings Article | | |||
| 2008 | [Rosen-Zvi, Michal] [Schülter, Eugen] Altmann, Andre [Sierra-Aragon, Saleta] [Zazzi, Maurizio] [Sönnerborg, Anders] [Oette, Mark] Lengauer, Thomas [Kaiser, Rolf] | Sustaining lamivudine/emtricitabine, abacavir, zidovudine or atazanavir from a previous treatment shows a clinical benefit In: Antiviral Therapy, A86 | Poster | | |||||
| | 2008 | Altmann, Andre [Rosen-Zvi, Michal] [Prosperi, Mattia] [Aharoni, Ehud] [Neuvirth, Hani] [Schülter, Eugen] Büch, Joachim [Peres, Yardena] [Incardona, Incardona] [Sönnerborg, Anders] [Kaiser, Rolf] [Zazzi, Maurizio] Lengauer, Thomas | The EuResist approach for predicting response to anti HIV-1 therapy In: Reviews in Antiviral Therapy, 107 | Poster | | |||
| 2007 | [Zazzi, Maurizio] [Aharoni, Ehud] [Altmann, Andre] [Baszó, Fulop] [Bidgood, Penny] [Borgulya, Gabór] [Denholm-Prince, J] [Fielder, M] [Kaiser, Rolf] [Kent, Carmel] [Lengauer, Thomas] [Nepusz, T] [Neuvirth, Hanni] [Peres, Yardena] [Petroczi, Andrea] [Prosperi, Mattia] [Romano, L] [Rosen-Zvi, Michal] [Schülter, Eugen] Sing, Tobias [Sonnerborg, Andras] [Thompson, R] [Ulivi, G] [Zalány, L] [Incardona, Francesca] | EuResist: exploration of multiple modeling techniques for prediction of response to treatment In: Proceedings of the 5th European HIV Drug Resistance Workshop, - | Poster | | |||||
| | 2007 | Altmann, Andre Sing, Tobias [Vermeiren, Hans] [Winters, Bart] [Van Craenenbroeck, Elke] [Van der Borght, Koen] [Rhee, Soo-Yon] [Shafer, Robert W] [Schülter, Eugen] [Kaiser, Rolf] [Peres, Yardena] [Sonnerborg, Anders] [Fessel, W Jeffrey] [Incardona, Francesca] [Zazzi, Maurizio] [Bacheler, Lee] [Van Vlijmen, Hermann] Lengauer, Thomas | Inferring virological response from genotype: with or without predicted phenotypes? In: Proceedings of the 16th International HIV Drug Resistance Workshop, S169 | Poster | | |||
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