MPI-INF D3 Publications: Journal Article: ProML - the Protein Markup Language for specification of protein sequences, structures and families

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Author, Editor(s)

Author(s):

Hanisch, Daniel
Zimmer, Ralf
Lengauer, Thomas

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Not MPG Author(s):

Hanisch, Daniel
Zimmer, Ralf

BibTeX cite key*:

Lengauer2002b

Title

Title*:

ProML - the Protein Markup Language for specification of protein sequences, structures and families

Journal

Journal Title*:	In Silico Biology	Journal's URL:	http://iospress.metapress.com/link.asp?id=105655
Download URL for the article:		Language:	English

Publisher

Publisher's Name:	IOS Press	Publisher's URL:	http://iospress.metapress.com/
Publisher's Address:	Amsterdam, the Netherlands	ISSN:	1386-6338

Vol, No, pp, Date

Volume*:	2	Number:	3
Publishing Date:	2002
Pages*:	313 - 324	Number of VG Pages:	10
Page Start:		Page End:
Sequence Number:		DOI:

Note, Abstract, ©

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(LaTeX) Abstract:	We propose a specification language ProML for protein sequences, structures, and families based on the open XML standard. The language allows for portable, system-independent, machine-parsable and human-readable representation of essential features of proteins. The language is of immediate use for several bioinformatics applications: we discuss clustering of proteins into families and the representation of the specific shared features of the respective clusters. Moreover, we use ProML for specification of data used in fold recognition bench-marks exploiting experimentally derived distance constraints.
URL for the Abstract:
Categories, Keywords:	Protein Markup Language, ProML, XML, protein properties, protein families, protein structures, distance constraints, protein cluster
HyperLinks / References / URLs:	http://iospress.metapress.com/link.asp?id=5ptuxyv1g2k3ab44 http://iospress.metapress.com/openurl.asp?genre=article&issn=1386-6338&volume=2&issue=3&spage=313
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BibTeX Entry:

@ARTICLE{Lengauer2002b,
AUTHOR = {Hanisch, Daniel and Zimmer, Ralf and Lengauer, Thomas},
TITLE = {ProML - the Protein Markup Language for specification of protein sequences, structures and families},
JOURNAL = {In Silico Biology},
PUBLISHER = {IOS Press},
YEAR = {2002},
NUMBER = {3},
VOLUME = {2},
PAGES = {313 -- 324},
ADDRESS = {Amsterdam, the Netherlands},
ISBN = {1386-6338},
}

Entry last modified by Uwe Brahm, 10/22/2003

Edit History (please click the blue arrow to see the details)

	Editor(s) Ruth Schneppen-Christmann	Created 11/25/2002 13:44:56
Revisions 11. 10. 9. 8. 7.	Editor(s) Uwe Brahm Christine Kiesel Christine Kiesel Christine Kiesel Christine Kiesel	Edit Dates 10/22/2003 07:51:26 PM 02.09.2003 14:49:57 12.08.2003 14:36:44 31.07.2003 09:28:49 22.05.2003 10:52:26

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