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	Title	Author(s) [non member]	Editor(s) [non member]	Year	Type
	Tackling Traveling Salesman Problem with Random Key Genetic Algorithm In: Journal of Hybrid Computing Research [1], 10-10	Patil, Kaustubh [Akerkar, Rajendra]		2008	Journal Article
	Taxonomic metagenome sequence assignment with structured output models In: Nature Methods [8], 191-192	Patil, Kaustubh R. [Haider, Peter] [Pope, Philip B.] [Turnbaugh, Peter J.] [Morrison, Mark] [Scheffer, Tobias] McHardy, Alice		2011	Journal Article
	The amphioxus genome illuminates vertebrate origins and cephalochordate biology In: Genome Research [18], 1100-1111	[Holland, L. Z.] [Albalat, R.] [Azumi, K.] [Benito-Gutiérrez, E.] [Blow, M. J.] [Bronner-Fraser, M.] [Brunet, F.] [Butts, T.] [Candiani, S.] [Dishaw, L. J.] [Ferrier, D. E.] [Garcia-Fernàndez, J.] [Gibson-Brown, J. J.] [Gissi, C.] [Godzik, A.] [Hallböök, F.] [Hirose, D.] [Hosomichi, K.] [Ikuta, T.] [Inoko, H.] [Kasahara, M.] [Kasamatsu, J.] [Kawashima, T.] [Kimura, A.] [Kobayashi, M.] [Kozmik, Z.] [Kubokawa, K.] [Laudet, V.] [Litman, G. W.] McHardy, Alice [Meulemans, D.] [Nonaka, M.] [Olinski, R. P.] [Pancer, Z.] [Pennacchio, L. A.] [Pestarino, M.] [Rast, J. P.] [Rigoutsos, I.] [Robinson-Rechavi, M.] [Roch, G.] [Saiga, H.] [Sasakura, Y.] [Satake, M.] [Satou, Y.] [Schubert, M.] [Sherwood, N.] [Shiina, T.] [Takatori, N.] [Tello, J.] [Vopalensky, P.] [Wada, S.] [Xu, A.] [Ye, Y.] [Yoshida, K.] [Yoshizaki, F.] [Yu, J. K.] [Zhang, Q.] [Zmasek, C. M.] [de Jong, P. J.] [Osoegawa, K.] [Putnam, N. H.] [Rokhsar, D. S.] [Satoh, N.] [Holland, P. W.]		2008	Journal Article
	The genome sequence of the tomato-pathogenic actinomycete Clavibacter michiganensis subsp. michiganensis NCPPB382 reveals a large island involved in pathogenicity In: The Journal of Bacteriology [190], 2138-2149	[Gartemann, K. H.] [Abt, B.] [Bekel, T.] [Burger, A.] [Engemann, J.] [Flügel, M.] [Gaigalat, L.] [Goesmann, A.] [Gräfen, I.] [Kalinowski, J.] [Kaup, O.] [Kirchner, O.] [Krause, L.] [Linke, B.] McHardy, Alice [Meyer, F.] [Pohle, S.] [Rückert, C.] [Schneiker, S.] [Zellermann, E. M.] [Pühler, A.] [Eichenlaub, R.] [Kaiser, O.] [Bartels, D.]		2008	Journal Article
	The impact of seasonal and year-round transmission regimes on the evolution of influenza A virus In: Proceedings of the Royal Society / B, Biological Sciences [278], 2249-2256	[Adams, Ben] McHardy, Alice		2011	Journal Article
	The PhyloPythiaS Web Server for Taxonomic Assignment of Metagenome Sequences In: PLoS ONE [7], e38581,1-e38581,9	Patil, Kaustubh Raosaheb Roune, Linus McHardy, Alice Carolyn		2012	Electronic Journal Article
	The role of genomics in tracking the evolution of influenza A virus In: PLOS Pathogens [5], e1000566:1-e1000566:6	McHardy, Alice Adams, Ben		2009	Journal Article
	Use of simulated data sets to evaluate the fidelity of metagenomic processing methods. In: Nature Methods [4], 495-500	[Mavromatis, K.] [Ivanova, N.] [Barry, K.] [Shapiro, H.] [Goltsman, E.] McHardy, Alice [Rigoutsos, I.] [Salamov, A.] [Korzeniewski, F.] [Land, M.] [Lapidus, A.] [Grigoriev, I.] [Richardson, P.] [Hugenholtz, P.] [Kyrpides, N. C.]		2007	Journal Article
	Viral Bioinformatics In: Modern Genome Annotation : the Biosapiens Network, 429-452	Adams, Ben McHardy, Alice [Lundegaard, C.] Lengauer, Thomas	Frishman, Dmitrij [Valencia, Alfonso]	2009	Part of a Book
	What's in the mix? Methods for the phylogenetic classification of metagenome sequence samples. In: Current Opinion in Microbiology [10], 499-503	McHardy, Alice [Rigoutsos, I.]		2007	Journal Article
	Whole-genome comparison of disease and carriage strains provides insights into virulence evolution in Neisseria meningitidis In: Proceedings of the National Academy of Sciences of the United States of America [105], 3473-3478	[Schoen, Christoph] [Blom, Jochen] [Claus, Heike] [Schramm-Glück, Anja] [Brandt, Petra] [Müller, Tobias] [Goesmann, Alexander] [Joseph, Biju] Konietzny, Sebastian [Kurzai, Oliver] [Schmitt, Corinna] [Friedrich, Torben] [Linke, Burkhard] [Vogel, Ulrich] [Frosch, Matthias]		2008	Journal Article