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TitleAuthor(s) [non member]Editor(s) [non member]YearType
Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins
In: Proceedings of the National Academy of Sciences of the United States of America [107], 7503-7508
[Turnbaugh, Peter J.]
[Quince, Christopher]
[Faith, Jeremiah J.]
McHardy, Alice
[Yatsunenko, Tanya]
[Niazi, Faheem]
[Affourtit, Jason]
[Egholm, Michael]
[Henrissat, Bernhard]
[Knight, Rob]
[Gordon, Jeffrey I.]
2010Journal Article
Phylogenetic binning of metagenome sequence samples
In: Handbook of molecular microbial ecology. - Vol. 1, Metagenomics and complementary approaches, 353-358
McHardy, Alice
Patil, Kaustubh R.
[de Bruijn, Frans J.]2011Part of a Book
Tackling Traveling Salesman Problem with Random Key Genetic Algorithm
In: Journal of Hybrid Computing Research [1], 10-10
Patil, Kaustubh
[Akerkar, Rajendra]
2008Journal Article
Taxonomic metagenome sequence assignment with structured output models
In: Nature Methods [8], 191-192
Patil, Kaustubh R.
[Haider, Peter]
[Pope, Philip B.]
[Turnbaugh, Peter J.]
[Morrison, Mark]
[Scheffer, Tobias]
McHardy, Alice
2011Journal Article
The amphioxus genome illuminates vertebrate origins and cephalochordate biology
In: Genome Research [18], 1100-1111
[Holland, L. Z.]
[Albalat, R.]
[Azumi, K.]
[Benito-Gutiérrez, E.]
[Blow, M. J.]
[Bronner-Fraser, M.]
[Brunet, F.]
[Butts, T.]
[Candiani, S.]
[Dishaw, L. J.]
[Ferrier, D. E.]
[Garcia-Fernàndez, J.]
[Gibson-Brown, J. J.]
[Gissi, C.]
[Godzik, A.]
[Hallböök, F.]
[Hirose, D.]
[Hosomichi, K.]
[Ikuta, T.]
[Inoko, H.]
[Kasahara, M.]
[Kasamatsu, J.]
[Kawashima, T.]
[Kimura, A.]
[Kobayashi, M.]
[Kozmik, Z.]
[Kubokawa, K.]
[Laudet, V.]
[Litman, G. W.]
McHardy, Alice
[Meulemans, D.]
[Nonaka, M.]
[Olinski, R. P.]
[Pancer, Z.]
[Pennacchio, L. A.]
[Pestarino, M.]
[Rast, J. P.]
[Rigoutsos, I.]
[Robinson-Rechavi, M.]
[Roch, G.]
[Saiga, H.]
[Sasakura, Y.]
[Satake, M.]
[Satou, Y.]
[Schubert, M.]
[Sherwood, N.]
[Shiina, T.]
[Takatori, N.]
[Tello, J.]
[Vopalensky, P.]
[Wada, S.]
[Xu, A.]
[Ye, Y.]
[Yoshida, K.]
[Yoshizaki, F.]
[Yu, J. K.]
[Zhang, Q.]
[Zmasek, C. M.]
[de Jong, P. J.]
[Osoegawa, K.]
[Putnam, N. H.]
[Rokhsar, D. S.]
[Satoh, N.]
[Holland, P. W.]
2008Journal Article
The genome sequence of the tomato-pathogenic actinomycete Clavibacter michiganensis subsp. michiganensis NCPPB382 reveals a large island involved in pathogenicity
In: The Journal of Bacteriology [190], 2138-2149
[Gartemann, K. H.]
[Abt, B.]
[Bekel, T.]
[Burger, A.]
[Engemann, J.]
[Flügel, M.]
[Gaigalat, L.]
[Goesmann, A.]
[Gräfen, I.]
[Kalinowski, J.]
[Kaup, O.]
[Kirchner, O.]
[Krause, L.]
[Linke, B.]
McHardy, Alice
[Meyer, F.]
[Pohle, S.]
[Rückert, C.]
[Schneiker, S.]
[Zellermann, E. M.]
[Pühler, A.]
[Eichenlaub, R.]
[Kaiser, O.]
[Bartels, D.]
2008Journal Article
The impact of seasonal and year-round transmission regimes on the evolution of influenza A virus
In: Proceedings of the Royal Society / B, Biological Sciences [278], 2249-2256
[Adams, Ben]
McHardy, Alice
2011Journal Article
The PhyloPythiaS Web Server for Taxonomic Assignment of Metagenome Sequences
In: PLoS ONE [7], e38581,1-e38581,9
Patil, Kaustubh Raosaheb
Roune, Linus
McHardy, Alice Carolyn
2012Electronic Journal Article
The role of genomics in tracking the evolution of influenza A virus
In: PLOS Pathogens [5], e1000566:1-e1000566:6
McHardy, Alice
Adams, Ben
2009Journal Article
Use of simulated data sets to evaluate the fidelity of metagenomic processing methods.
In: Nature Methods [4], 495-500
[Mavromatis, K.]
[Ivanova, N.]
[Barry, K.]
[Shapiro, H.]
[Goltsman, E.]
McHardy, Alice
[Rigoutsos, I.]
[Salamov, A.]
[Korzeniewski, F.]
[Land, M.]
[Lapidus, A.]
[Grigoriev, I.]
[Richardson, P.]
[Hugenholtz, P.]
[Kyrpides, N. C.]
2007Journal Article
Viral Bioinformatics
In: Modern Genome Annotation : the Biosapiens Network, 429-452
Adams, Ben
McHardy, Alice
[Lundegaard, C.]
Lengauer, Thomas
Frishman, Dmitrij
[Valencia, Alfonso]
2009Part of a Book
What's in the mix? Methods for the phylogenetic classification of metagenome sequence samples.
In: Current Opinion in Microbiology [10], 499-503
McHardy, Alice
[Rigoutsos, I.]
2007Journal Article
Whole-genome comparison of disease and carriage strains provides insights into virulence evolution in Neisseria meningitidis
In: Proceedings of the National Academy of Sciences of the United States of America [105], 3473-3478
[Schoen, Christoph]
[Blom, Jochen]
[Claus, Heike]
[Schramm-Glück, Anja]
[Brandt, Petra]
[Müller, Tobias]
[Goesmann, Alexander]
[Joseph, Biju]
Konietzny, Sebastian
[Kurzai, Oliver]
[Schmitt, Corinna]
[Friedrich, Torben]
[Linke, Burkhard]
[Vogel, Ulrich]
[Frosch, Matthias]
2008Journal Article

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