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Date | Time | Created By ... | Author(s) [non member] | Editor(s) [non member] | Year | Title | Type | ||||||||
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Mar 11, Monday | 12:47:19 | Administrators,LocalDomainServers,[AGEditors] | Tusche, Christina Steinbrück, Lars McHardy, Alice Carolyn | 2012 | Detecting Patches of Protein Sites of Influenza A Viruses under Positive Selection In: Molecular Biology and Evolution [29], 2063-2071 | Journal Article | |||||||||
Mar 11, Monday | 12:36:23 | Administrators,LocalDomainServers,[AGEditors] | Steinbrück, Lars McHardy, Alice Carolyn | 2012 | Inference of Genotype–Phenotype Relationships in the Antigenic Evolution of Human Influenza A (H3N2) Viruses In: PLoS Computational Biology [8], e1002492,1-e1002492,9 | Electronic Journal Article | |||||||||
Mar 11, Monday | 09:23:36 | [Library] | [Pope, Phillip B.] [Mackenzie, Alasdair K.] Gregor, Ivan [Smith, Wendy] [Sundset, Monica A.] McHardy, Alice C. [Morrison, Mark] [Eijsink, Vincent G.H.] | 2012 | Metagenomics of the Svalbard Reindeer Rumen Microbiome Reveals Abundance of Polysaccharide Utilization Loci In: PLoS ONE [7], e38571,1-e38571,10 | Electronic Journal Article | |||||||||
Mar 11, Monday | 09:08:59 | Administrators,LocalDomainServers,[AGEditors] | Patil, Kaustubh Raosaheb Roune, Linus McHardy, Alice Carolyn | 2012 | The PhyloPythiaS Web Server for Taxonomic Assignment of Metagenome Sequences In: PLoS ONE [7], e38581,1-e38581,9 | Electronic Journal Article | |||||||||
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Dec 19, Monday | 11:29:24 | [Library] | [Gilbert, Jack A.] [Steele, Joshua A.] [Caporaso, J. Gregory] [Steinbrück, Lars] [Reeder, Jens] [Temperton, Ben] [Huse, Susan] McHardy, Alice C. [Knight, Rob] [Joint, Ian] [Somerfield, Paul] [Fuhrman, Jed A.] [Field, Dawn] | 2012 | Defining seasonal marine microbial community dynamics In: The ISME Journal [6], 298-308 | Journal Article | |||||||||
Dec 19, Monday | 11:25:34 | [Library] | [Pope, P. B.] [Smith, W.] [Denman, S. E.] [Tringe, S. G.] [Barry, K.] [Hugenholtz, P.] [McSweeney, C. S.] McHardy, Alice [Morrison, M.] | 2011 | Isolation of Succinivibrionaceae Implicated in Low Methane Emissions from Tammar Wallabies In: Science [333], 646-648 | Journal Article | |||||||||
Dec 19, Monday | 11:19:42 | Administrators,LocalDomainServers,[AGEditors] | Konietzny, Sebastian G.A. [Dietz, Laura] McHardy, Alice | 2011 | Inferring functional modules of protein families with probabilistic topic models In: BMC Bioinformatics [12], 141 | Journal Article | |||||||||
Dec 14, Wednesday | 16:30:22 | [Library] | [Adams, Ben] McHardy, Alice | 2011 | The impact of seasonal and year-round transmission regimes on the evolution of influenza A virus In: Proceedings of the Royal Society / B, Biological Sciences [278], 2249-2256 | Journal Article | |||||||||
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Mar 03, Thursday | 10:43:01 | Administrators,LocalDomainServers,[AGEditors] | McHardy, Alice Patil, Kaustubh R. | [de Bruijn, Frans J.] | 2011 | Phylogenetic binning of metagenome sequence samples In: Handbook of molecular microbial ecology. - Vol. 1, Metagenomics and complementary approaches, 353-358 | Part of a Book | ||||||||
Mar 03, Thursday | 10:32:25 | [Library] | Patil, Kaustubh R. [Haider, Peter] [Pope, Philip B.] [Turnbaugh, Peter J.] [Morrison, Mark] [Scheffer, Tobias] McHardy, Alice | 2011 | Taxonomic metagenome sequence assignment with structured output models In: Nature Methods [8], 191-192 | Journal Article | |||||||||
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Dec 02, Thursday | 17:29:58 | Administrators,LocalDomainServers,[AGEditors] | [Turnbaugh, Peter J.] [Quince, Christopher] [Faith, Jeremiah J.] McHardy, Alice [Yatsunenko, Tanya] [Niazi, Faheem] [Affourtit, Jason] [Egholm, Michael] [Henrissat, Bernhard] [Knight, Rob] [Gordon, Jeffrey I.] | 2010 | Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins In: Proceedings of the National Academy of Sciences of the United States of America [107], 7503-7508 | Journal Article | |||||||||
Dec 02, Thursday | 17:26:01 | [Library] | [Pope, P. B.] [Denman, S. E.] [Jones, M.] [Tringe, S. G.] [Barry, K.] [Malfatti, S. A.] McHardy, Alice [Cheng, J.-F.] [Hugenholtz, P.] [McSweeney, C. S.] [Morrison, M.] | 2010 | Adaptation to herbivory by the Tammar wallaby includes bacterial and glycoside hydrolase profiles different from other herbivores In: Proceedings of the National Academy of Sciences of the United States of America [107], 14793-14798 | Journal Article | |||||||||
Dec 02, Thursday | 17:16:07 | [Library] | [Lykidis, Athanasios] [Chen, Chia-Lung] [Tringe, Susannah G.] McHardy, Alice [Copeland, Alex] [Kyrpides, Nikos C.] [Hugenholtz, Philip] [Macarie, Hervé] [Olmos, Alejandro] [Monroy, Oscar] [Liu, Wen-Tso] | 2011 | Multiple syntrophic interactions in a terephthalate-degrading methanogenic consortium In: The ISME Journal [5], 122-130 | Journal Article | |||||||||
Dec 02, Thursday | 16:56:08 | [Library] | Steinbrück, Lars McHardy, Alice | 2010 | Allele dynamics plots for the study of evolutionary dynamics in viral populations In: Nucleic Acids Research [39], 1-12 | Electronic Journal Article | |||||||||
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Jun 08, Tuesday | 11:25:46 | Administrators,LocalDomainServers,[AGEditors] | Patil, Kaustubh [Akerkar, Rajendra] | 2008 | Tackling Traveling Salesman Problem with Random Key Genetic Algorithm In: Journal of Hybrid Computing Research [1], 10-10 | Journal Article | |||||||||
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Mar 25, Wednesday | 13:32:39 | Administrators,LocalDomainServers,[AGEditors] | McHardy, Alice Adams, Ben | 2009 | The role of genomics in tracking the evolution of influenza A virus In: PLOS Pathogens [5], e1000566:1-e1000566:6 | Journal Article | |||||||||
Mar 25, Wednesday | 13:29:14 | Christina Tusche | [Schoen, Christoph] [Blom, Jochen] [Claus, Heike] [Schramm-Glück, Anja] [Brandt, Petra] [Müller, Tobias] [Goesmann, Alexander] [Joseph, Biju] Konietzny, Sebastian [Kurzai, Oliver] [Schmitt, Corinna] [Friedrich, Torben] [Linke, Burkhard] [Vogel, Ulrich] [Frosch, Matthias] | 2008 | Whole-genome comparison of disease and carriage strains provides insights into virulence evolution in Neisseria meningitidis In: Proceedings of the National Academy of Sciences of the United States of America [105], 3473-3478 | Journal Article | |||||||||
Mar 25, Wednesday | 13:25:02 | Christina Tusche | [Schneiker, Susanne] [Perlova, Olena] [Kaiser, Olaf] [Gerth, Klaus] [Alici, Aysel] [Altmeyer, Matthias] [Bartels, Daniela] [Bekel, Thomas] [Beyer, Stefan] [Bode, Edna] [Bode, Helge] [Bolten, Christoph] [Choudhuri, Jomuna] [Doss, Sabrina] [Elnakady, Yasser] [Frank, Bettina] [Gaigalat, Lars] [Goesmann, Alexander] [Groeger, Carolin] [Gross, Frank] [Jelsbak, Lars] [Jelsbak, Lotte] [Kalinowski, Jörn] [Kegler, Carsten] [Knauber, Tina] Konietzny, Sebastian [Kopp, Maren] [Krause, Lutz] [Krug, Daniel] [Linke, Bukhard] [Mahmud, Taifo] [Martinez-Arias, Rosa] McHardy, Alice [Merai, Michelle] [Meyer, Folker] [Mormann, Sascha] [Muñoz-Dorado, Jose] [Perez, Juana] [Pradella, Silke] [Rachid, Shwan] [Raddatz, Günter] [Rosenau, Frank] [Rückert, Christian] [Sasse, Florenz] [Scharfe, Maren] [Schuster, Stephan C.] [Suen, Garret] [Treuner-Lange, Anke] [Velicer, Gregory] [Vorhölter, Frank-Jörg] [Weissman, Kira J.] [Welch, Roy D.] [Wenzel, Silke C.] [Whitworth, David E.] [Wilhelm, Susanne] [Wittmann, Christoph] [Blöcker, Helmut] [Pühler, Alfred] [Müller, Rolf] | 2007 | Complete genome sequence of the myxobacterium Sorangium cellulosum. In: Nature Biotechnology [27], 281-1289 | Journal Article | |||||||||
Mar 25, Wednesday | 13:15:39 | Christina Tusche | [Meisinger-Henschel, Christine] [Schmidt, Michaela] [Lukassen, Susanne] [Linke, Burkhard] [Krause, Lutz] Konietzny, Sebastian [Goesmann, Alexander] [Howley, Paul] [Chaplin, Paul] [Suter, Mark] [Hausmann, Jürgen] | 2007 | Genomic sequence of chorioallantois vaccinia virus Ankara, the ancestor of modified vaccinia virus Ankara In: Journal of General Virology [88], 3249-3259 | Journal Article | |||||||||
Mar 25, Wednesday | 13:06:51 | Christina Tusche | Patil, Kaustubh [Shelokar, P. S.] [Jayaraman, V. K.] [Kulkarni, B. D.] | 2008 | Ant Colony Optimization in the Direct Ordering Gene Expression Data In: Journal of Hybrid Computing Research [1], 10-10 | Journal Article | |||||||||
Mar 25, Wednesday | 13:02:41 | Christina Tusche | Patil, Kaustubh [Kulkarni, Abhijit] | 2007 | A simple visualization technique to understand the system dynamics in bioreactors In: Biotechnology Progress [23], 1101-1105 | Journal Article | |||||||||
Mar 25, Wednesday | 13:01:10 | Christina Tusche | [Vieira, J] [Cardoso, CS] [Pinto, JP] Patil, Kaustubh [Brazdil, P] [Cruz, E] [Mascarenhas, C] [Lacerda, R] [Gartner, A] [Almeida, S] [Alves, H] [Porto, G] | 2007 | A Putative Gene Located at the MHC-CLASS I Region Around the D6S105 Marker Contributes to the Setting of CD8+ T Lymphocyte Numbers in Humans In: International Journal of Immunogenetics [34], 359-367 | Journal Article | |||||||||
Mar 25, Wednesday | 12:58:00 | Christina Tusche | [Vieira, J] [Cardoso, CS] [Pinto, JP] Patil, Kaustubh [Brazdil, P] [Cruz, E] [Mascarenhas, C] [Lacerda, R] [Gartner, A] [Almeida, S] [Alves, H] [Porto, G] | 2007 | Location of a putative gene contributing to the setting of CD8+T lymphocytes: A modifier of hereditary hemochromatosis expression? In: American Journal of Hematology [82], 509-509 | Journal Article | |||||||||
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Feb 13, Friday | 11:51:01 | Alice McHardy | McHardy, Alice Steinbrück, Lars | 2008 | Method and system for building a phylogeny from genetic sequences and using the same for recommendation of vaccine strain candidates for the influenza virus | Miscellaneous | |||||||||
Feb 13, Friday | 11:43:14 | Administrators,LocalDomainServers,[AGEditors] | McHardy, Alice Patil, Kaustubh | 2009 | Informatik für die Metagenomforschung: Einblicke in die Welt der unkultivierbaren Mikroorganismen In: Tätigkeitsberichte 2009 der Institute, 1-6 | Part of a Book | |||||||||
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Jan 16, Friday | 15:49:20 | Administrators,LocalDomainServers,[AGEditors] | Adams, Ben McHardy, Alice [Lundegaard, C.] Lengauer, Thomas | Frishman, Dmitrij [Valencia, Alfonso] | 2009 | Viral Bioinformatics In: Modern Genome Annotation : the Biosapiens Network, 429-452 | Part of a Book | ||||||||
Jan 16, Friday | 15:23:24 | Christina Tusche | [Gartemann, K. H.] [Abt, B.] [Bekel, T.] [Burger, A.] [Engemann, J.] [Flügel, M.] [Gaigalat, L.] [Goesmann, A.] [Gräfen, I.] [Kalinowski, J.] [Kaup, O.] [Kirchner, O.] [Krause, L.] [Linke, B.] McHardy, Alice [Meyer, F.] [Pohle, S.] [Rückert, C.] [Schneiker, S.] [Zellermann, E. M.] [Pühler, A.] [Eichenlaub, R.] [Kaiser, O.] [Bartels, D.] | 2008 | The genome sequence of the tomato-pathogenic actinomycete Clavibacter michiganensis subsp. michiganensis NCPPB382 reveals a large island involved in pathogenicity In: The Journal of Bacteriology [190], 2138-2149 | Journal Article | |||||||||
Jan 16, Friday | 14:59:54 | Christina Tusche | [Holland, L. Z.] [Albalat, R.] [Azumi, K.] [Benito-Gutiérrez, E.] [Blow, M. J.] [Bronner-Fraser, M.] [Brunet, F.] [Butts, T.] [Candiani, S.] [Dishaw, L. J.] [Ferrier, D. E.] [Garcia-Fernàndez, J.] [Gibson-Brown, J. J.] [Gissi, C.] [Godzik, A.] [Hallböök, F.] [Hirose, D.] [Hosomichi, K.] [Ikuta, T.] [Inoko, H.] [Kasahara, M.] [Kasamatsu, J.] [Kawashima, T.] [Kimura, A.] [Kobayashi, M.] [Kozmik, Z.] [Kubokawa, K.] [Laudet, V.] [Litman, G. W.] McHardy, Alice [Meulemans, D.] [Nonaka, M.] [Olinski, R. P.] [Pancer, Z.] [Pennacchio, L. A.] [Pestarino, M.] [Rast, J. P.] [Rigoutsos, I.] [Robinson-Rechavi, M.] [Roch, G.] [Saiga, H.] [Sasakura, Y.] [Satake, M.] [Satou, Y.] [Schubert, M.] [Sherwood, N.] [Shiina, T.] [Takatori, N.] [Tello, J.] [Vopalensky, P.] [Wada, S.] [Xu, A.] [Ye, Y.] [Yoshida, K.] [Yoshizaki, F.] [Yu, J. K.] [Zhang, Q.] [Zmasek, C. M.] [de Jong, P. J.] [Osoegawa, K.] [Putnam, N. H.] [Rokhsar, D. S.] [Satoh, N.] [Holland, P. W.] | 2008 | The amphioxus genome illuminates vertebrate origins and cephalochordate biology In: Genome Research [18], 1100-1111 | Journal Article | |||||||||
Jan 16, Friday | 13:02:30 | Lars Steinbrück | McHardy, Alice [Krause, L.] [Nattkemper, T. W.] [Puhler, A.] [Stoye, J.] [Meyer, F.] | 2007 | GISMO - prokaryotic gene identification using a support vector machine for ORF classification. In: Nucleic Acids Research [32], 540-549 | Journal Article | |||||||||
Jan 16, Friday | 12:57:24 | Lars Steinbrück | McHardy, Alice [Martin, H. G.] [Tsirigos, A.] [Hugenholtz, P.] [Rigoutsos, I.] | 2007 | Accurate phylogenetic classification of variable-length DNA fragments. In: Nature Methods [4], 63-72 | Journal Article | |||||||||
Jan 16, Friday | 12:51:48 | Lars Steinbrück | [Mavromatis, K.] [Ivanova, N.] [Barry, K.] [Shapiro, H.] [Goltsman, E.] McHardy, Alice [Rigoutsos, I.] [Salamov, A.] [Korzeniewski, F.] [Land, M.] [Lapidus, A.] [Grigoriev, I.] [Richardson, P.] [Hugenholtz, P.] [Kyrpides, N. C.] | 2007 | Use of simulated data sets to evaluate the fidelity of metagenomic processing methods. In: Nature Methods [4], 495-500 | Journal Article | |||||||||
Jan 16, Friday | 12:41:29 | Christina Tusche | [Warnecke, F.] [Luginbühl, P.] [Ivanova, N.] [Ghassemian, M.] [Richardson, T. H.] [Stege, J. T.] [Cayouette, M.] McHardy, Alice [Djordjevic, G.] [Aboushadi, N.] [Sorek, R.] [Tringe, S. G.] [Podar, M.] [Martin, H. G.] [Kunin, V.] [Dalevi, D.] [Madejska, J.] [Kirton, E.] [Platt, D.] [Szeto, E.] [Salamov, A.] [Barry, K.] [Mikhailova, N.] [Kyrpides, N. C.] [Matson, E. G.] [Ottesen, E. A.] [Zhang, X.] [Hernández, M.] [Murillo, C.] [Acosta, L. G.] [Rigoutsos, I.] [Tamayo, G.] [Green, B. D.] [Chang, C.] [Rubin, E. M.] [Mathur, E. J.] [Robertson, D. E.] [Hugenholtz, P.] [Leadbetter, J. R.] | 2007 | Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite In: Nature [450], 560-565 | Journal Article | |||||||||
Jan 16, Friday | 12:39:58 | Lars Steinbrück | McHardy, Alice [Rigoutsos, I.] | 2007 | What's in the mix? Methods for the phylogenetic classification of metagenome sequence samples. In: Current Opinion in Microbiology [10], 499-503 | Journal Article | |||||||||
Jan 16, Friday | 11:27:43 | Christina Tusche | McHardy, Alice | [Keith, Jonathan M.] | 2008 | Finding genes in genome sequence In: Bioinformatics. - Vol. 1, Data, Sequence Analysis and Evolution, 163-77 In: Methods in Molecular Biology [452], 163-77 | Part of a Book | ||||||||
Jan 16, Friday | 11:23:21 | Christina Tusche | [Kalyuzhnaya, M. G.] [Lapidus, A.] [Ivanova, N.] [Copeland, A. C.] McHardy, Alice [Szeto, E.] [Salamov, A.] [Grigoriev, I. V.] [Suciu, D.] [Levine, S. R.] [Markowitz, V. M.] [Rigoutsos, I.] [Tringe, S. G.] [Bruce, D. C.] [Richardson, P. M.] [Lidstrom, M. E.] [Chistoserdova, L.] | 2008 | High-resolution metagenomics targets specific functional types in complex microbial communities In: Nature Biotechnology [26], 1029-34 | Journal Article | |||||||||
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