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2
Show details for Lacerda, RLacerda, R
1
Show details for Land, M.Land, M.
2
Show details for Lapidus, A.Lapidus, A.
1
Show details for Laudet, V.Laudet, V.
1
Show details for Leadbetter, J. R.Leadbetter, J. R.
1
Show details for Lengauer, ThomasLengauer, Thomas
1
Show details for Levine, S. R.Levine, S. R.
1
Show details for Lidstrom, M. E.Lidstrom, M. E.
1
Show details for Linke, BukhardLinke, Bukhard
2
Show details for Linke, BurkhardLinke, Burkhard
1
Show details for Linke, B.Linke, B.
1
Show details for Litman, G. W.Litman, G. W.
1
Show details for Liu, Wen-TsoLiu, Wen-Tso
1
Show details for Luginbühl, P.Luginbühl, P.
1
Show details for Lukassen, SusanneLukassen, Susanne
1
Show details for Lundegaard, C.Lundegaard, C.
1
Show details for Lykidis, AthanasiosLykidis, Athanasios
1
Show details for Macarie, HervéMacarie, Hervé
1
Show details for Mackenzie, Alasdair K.Mackenzie, Alasdair K.
1
Show details for Madejska, J.Madejska, J.
1
Show details for Mahmud, TaifoMahmud, Taifo
1
Show details for Malfatti, S. A.Malfatti, S. A.
1
Show details for Markowitz, V. M.Markowitz, V. M.
1
Show details for Martinez-Arias, RosaMartinez-Arias, Rosa
2
Show details for Martin, H. G.Martin, H. G.
2
Show details for Mascarenhas, CMascarenhas, C
1
Show details for Mathur, E. J.Mathur, E. J.
1
Show details for Matson, E. G.Matson, E. G.
1
Show details for Mavromatis, K.Mavromatis, K.
23
Hide details for McHardy, AliceMcHardy, Alice
2011Konietzny, Sebastian G.A.
[Dietz, Laura]
McHardy, Alice
Inferring functional modules of protein families with probabilistic topic models
In: BMC Bioinformatics [12], 141
Journal Article
2011[Pope, P. B.]
[Smith, W.]
[Denman, S. E.]
[Tringe, S. G.]
[Barry, K.]
[Hugenholtz, P.]
[McSweeney, C. S.]
McHardy, Alice
[Morrison, M.]
Isolation of Succinivibrionaceae Implicated in Low Methane Emissions from Tammar Wallabies
In: Science [333], 646-648
Journal Article
2011[Lykidis, Athanasios]
[Chen, Chia-Lung]
[Tringe, Susannah G.]
McHardy, Alice
[Copeland, Alex]
[Kyrpides, Nikos C.]
[Hugenholtz, Philip]
[Macarie, Hervé]
[Olmos, Alejandro]
[Monroy, Oscar]
[Liu, Wen-Tso]
Multiple syntrophic interactions in a terephthalate-degrading methanogenic consortium
In: The ISME Journal [5], 122-130
Journal Article
2011McHardy, Alice
Patil, Kaustubh R.
Phylogenetic binning of metagenome sequence samples
In: Handbook of molecular microbial ecology. - Vol. 1, Metagenomics and complementary approaches, 353-358
Part of a Book
2011Patil, Kaustubh R.
[Haider, Peter]
[Pope, Philip B.]
[Turnbaugh, Peter J.]
[Morrison, Mark]
[Scheffer, Tobias]
McHardy, Alice
Taxonomic metagenome sequence assignment with structured output models
In: Nature Methods [8], 191-192
Journal Article
2011[Adams, Ben]
McHardy, Alice
The impact of seasonal and year-round transmission regimes on the evolution of influenza A virus
In: Proceedings of the Royal Society / B, Biological Sciences [278], 2249-2256
Journal Article
2010[Pope, P. B.]
[Denman, S. E.]
[Jones, M.]
[Tringe, S. G.]
[Barry, K.]
[Malfatti, S. A.]
McHardy, Alice
[Cheng, J.-F.]
[Hugenholtz, P.]
[McSweeney, C. S.]
[Morrison, M.]
Adaptation to herbivory by the Tammar wallaby includes bacterial and glycoside hydrolase profiles different from other herbivores
In: Proceedings of the National Academy of Sciences of the United States of America [107], 14793-14798
Journal Article
2010Steinbrück, Lars
McHardy, Alice
Allele dynamics plots for the study of evolutionary dynamics in viral populations
In: Nucleic Acids Research [39], 1-12
Electronic Journal Article
2010[Turnbaugh, Peter J.]
[Quince, Christopher]
[Faith, Jeremiah J.]
McHardy, Alice
[Yatsunenko, Tanya]
[Niazi, Faheem]
[Affourtit, Jason]
[Egholm, Michael]
[Henrissat, Bernhard]
[Knight, Rob]
[Gordon, Jeffrey I.]
Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins
In: Proceedings of the National Academy of Sciences of the United States of America [107], 7503-7508
Journal Article
2009McHardy, Alice
Patil, Kaustubh
Informatik für die Metagenomforschung: Einblicke in die Welt der unkultivierbaren Mikroorganismen
In: Tätigkeitsberichte 2009 der Institute, 1-6
Part of a Book
2009McHardy, Alice
Adams, Ben
The role of genomics in tracking the evolution of influenza A virus
In: PLOS Pathogens [5], e1000566:1-e1000566:6
Journal Article
2009Adams, Ben
McHardy, Alice
[Lundegaard, C.]
Lengauer, Thomas
Viral Bioinformatics
In: Modern Genome Annotation : the Biosapiens Network, 429-452
Part of a Book
2008McHardy, AliceFinding genes in genome sequence
In: Bioinformatics. - Vol. 1, Data, Sequence Analysis and Evolution, 163-77
In: Methods in Molecular Biology [452], 163-77
Part of a Book
2008[Kalyuzhnaya, M. G.]
[Lapidus, A.]
[Ivanova, N.]
[Copeland, A. C.]
McHardy, Alice
[Szeto, E.]
[Salamov, A.]
[Grigoriev, I. V.]
[Suciu, D.]
[Levine, S. R.]
[Markowitz, V. M.]
[Rigoutsos, I.]
[Tringe, S. G.]
[Bruce, D. C.]
[Richardson, P. M.]
[Lidstrom, M. E.]
[Chistoserdova, L.]
High-resolution metagenomics targets specific functional types in complex microbial communities
In: Nature Biotechnology [26], 1029-34
Journal Article
2008McHardy, Alice
Steinbrück, Lars
Method and system for building a phylogeny from genetic sequences and using the same for recommendation of vaccine strain candidates for the influenza virusMiscellaneous
2008[Holland, L. Z.]
[Albalat, R.]
[Azumi, K.]
[Benito-Gutiérrez, E.]
[Blow, M. J.]
[Bronner-Fraser, M.]
[Brunet, F.]
[Butts, T.]
[Candiani, S.]
[Dishaw, L. J.]
[Ferrier, D. E.]
[Garcia-Fernàndez, J.]
[Gibson-Brown, J. J.]
[Gissi, C.]
[Godzik, A.]
[Hallböök, F.]
[Hirose, D.]
[Hosomichi, K.]
[Ikuta, T.]
[Inoko, H.]
[Kasahara, M.]
[Kasamatsu, J.]
[Kawashima, T.]
[Kimura, A.]
[Kobayashi, M.]
[Kozmik, Z.]
[Kubokawa, K.]
[Laudet, V.]
[Litman, G. W.]
McHardy, Alice
[Meulemans, D.]
[Nonaka, M.]
[Olinski, R. P.]
[Pancer, Z.]
[Pennacchio, L. A.]
[Pestarino, M.]
[Rast, J. P.]
[Rigoutsos, I.]
[Robinson-Rechavi, M.]
[Roch, G.]
[Saiga, H.]
[Sasakura, Y.]
[Satake, M.]
[Satou, Y.]
[Schubert, M.]
[Sherwood, N.]
[Shiina, T.]
[Takatori, N.]
[Tello, J.]
[Vopalensky, P.]
[Wada, S.]
[Xu, A.]
[Ye, Y.]
[Yoshida, K.]
[Yoshizaki, F.]
[Yu, J. K.]
[Zhang, Q.]
[Zmasek, C. M.]
[de Jong, P. J.]
[Osoegawa, K.]
[Putnam, N. H.]
[Rokhsar, D. S.]
[Satoh, N.]
[Holland, P. W.]
The amphioxus genome illuminates vertebrate origins and cephalochordate biology
In: Genome Research [18], 1100-1111
Journal Article
2008[Gartemann, K. H.]
[Abt, B.]
[Bekel, T.]
[Burger, A.]
[Engemann, J.]
[Flügel, M.]
[Gaigalat, L.]
[Goesmann, A.]
[Gräfen, I.]
[Kalinowski, J.]
[Kaup, O.]
[Kirchner, O.]
[Krause, L.]
[Linke, B.]
McHardy, Alice
[Meyer, F.]
[Pohle, S.]
[Rückert, C.]
[Schneiker, S.]
[Zellermann, E. M.]
[Pühler, A.]
[Eichenlaub, R.]
[Kaiser, O.]
[Bartels, D.]
The genome sequence of the tomato-pathogenic actinomycete Clavibacter michiganensis subsp. michiganensis NCPPB382 reveals a large island involved in pathogenicity
In: The Journal of Bacteriology [190], 2138-2149
Journal Article
2007McHardy, Alice
[Martin, H. G.]
[Tsirigos, A.]
[Hugenholtz, P.]
[Rigoutsos, I.]
Accurate phylogenetic classification of variable-length DNA fragments.
In: Nature Methods [4], 63-72
Journal Article
2007[Schneiker, Susanne]
[Perlova, Olena]
[Kaiser, Olaf]
[Gerth, Klaus]
[Alici, Aysel]
[Altmeyer, Matthias]
[Bartels, Daniela]
[Bekel, Thomas]
[Beyer, Stefan]
[Bode, Edna]
[Bode, Helge]
[Bolten, Christoph]
[Choudhuri, Jomuna]
[Doss, Sabrina]
[Elnakady, Yasser]
[Frank, Bettina]
[Gaigalat, Lars]
[Goesmann, Alexander]
[Groeger, Carolin]
[Gross, Frank]
[Jelsbak, Lars]
[Jelsbak, Lotte]
[Kalinowski, Jörn]
[Kegler, Carsten]
[Knauber, Tina]
Konietzny, Sebastian
[Kopp, Maren]
[Krause, Lutz]
[Krug, Daniel]
[Linke, Bukhard]
[Mahmud, Taifo]
[Martinez-Arias, Rosa]
McHardy, Alice
[Merai, Michelle]
[Meyer, Folker]
[Mormann, Sascha]
[Muñoz-Dorado, Jose]
[Perez, Juana]
[Pradella, Silke]
[Rachid, Shwan]
[Raddatz, Günter]
[Rosenau, Frank]
[Rückert, Christian]
[Sasse, Florenz]
[Scharfe, Maren]
[Schuster, Stephan C.]
[Suen, Garret]
[Treuner-Lange, Anke]
[Velicer, Gregory]
[Vorhölter, Frank-Jörg]
[Weissman, Kira J.]
[Welch, Roy D.]
[Wenzel, Silke C.]
[Whitworth, David E.]
[Wilhelm, Susanne]
[Wittmann, Christoph]
[Blöcker, Helmut]
[Pühler, Alfred]
[Müller, Rolf]
Complete genome sequence of the myxobacterium Sorangium cellulosum.
In: Nature Biotechnology [27], 281-1289
Journal Article
2007McHardy, Alice
[Krause, L.]
[Nattkemper, T. W.]
[Puhler, A.]
[Stoye, J.]
[Meyer, F.]
GISMO - prokaryotic gene identification using a support vector machine for ORF classification.
In: Nucleic Acids Research [32], 540-549
Journal Article
2007[Warnecke, F.]
[Luginbühl, P.]
[Ivanova, N.]
[Ghassemian, M.]
[Richardson, T. H.]
[Stege, J. T.]
[Cayouette, M.]
McHardy, Alice
[Djordjevic, G.]
[Aboushadi, N.]
[Sorek, R.]
[Tringe, S. G.]
[Podar, M.]
[Martin, H. G.]
[Kunin, V.]
[Dalevi, D.]
[Madejska, J.]
[Kirton, E.]
[Platt, D.]
[Szeto, E.]
[Salamov, A.]
[Barry, K.]
[Mikhailova, N.]
[Kyrpides, N. C.]
[Matson, E. G.]
[Ottesen, E. A.]
[Zhang, X.]
[Hernández, M.]
[Murillo, C.]
[Acosta, L. G.]
[Rigoutsos, I.]
[Tamayo, G.]
[Green, B. D.]
[Chang, C.]
[Rubin, E. M.]
[Mathur, E. J.]
[Robertson, D. E.]
[Hugenholtz, P.]
[Leadbetter, J. R.]
Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite
In: Nature [450], 560-565
Journal Article
2007[Mavromatis, K.]
[Ivanova, N.]
[Barry, K.]
[Shapiro, H.]
[Goltsman, E.]
McHardy, Alice
[Rigoutsos, I.]
[Salamov, A.]
[Korzeniewski, F.]
[Land, M.]
[Lapidus, A.]
[Grigoriev, I.]
[Richardson, P.]
[Hugenholtz, P.]
[Kyrpides, N. C.]
Use of simulated data sets to evaluate the fidelity of metagenomic processing methods.
In: Nature Methods [4], 495-500
Journal Article
2007McHardy, Alice
[Rigoutsos, I.]
What's in the mix? Methods for the phylogenetic classification of metagenome sequence samples.
In: Current Opinion in Microbiology [10], 499-503
Journal Article
3
Show details for McHardy, Alice CarolynMcHardy, Alice Carolyn
2
Show details for McHardy, Alice C.McHardy, Alice C.
2
Show details for McSweeney, C. S.McSweeney, C. S.
1
Show details for Meisinger-Henschel, ChristineMeisinger-Henschel, Christine
1
Show details for Merai, MichelleMerai, Michelle
1
Show details for Meulemans, D.Meulemans, D.
1
Show details for Meyer, FolkerMeyer, Folker
2
Show details for Meyer, F.Meyer, F.
1
Show details for Mikhailova, N.Mikhailova, N.
1
Show details for Monroy, OscarMonroy, Oscar
1
Show details for Mormann, SaschaMormann, Sascha
2
Show details for Morrison, MarkMorrison, Mark
2
Show details for Morrison, M.Morrison, M.
1
Show details for Müller, RolfMüller, Rolf
1
Show details for Müller, TobiasMüller, Tobias
1
Show details for Muñoz-Dorado, JoseMuñoz-Dorado, Jose
1
Show details for Murillo, C.Murillo, C.
1
Show details for Nattkemper, T. W.Nattkemper, T. W.
1
Show details for Niazi, FaheemNiazi, Faheem
1
Show details for Nonaka, M.Nonaka, M.
1
Show details for Olinski, R. P.Olinski, R. P.
1
Show details for Olmos, AlejandroOlmos, Alejandro
1
Show details for Osoegawa, K.Osoegawa, K.
1
Show details for Ottesen, E. A.Ottesen, E. A.
1
Show details for Pancer, Z.Pancer, Z.
6
Show details for Patil, KaustubhPatil, Kaustubh
1
Show details for Patil, Kaustubh RaosahebPatil, Kaustubh Raosaheb
2
Show details for Patil, Kaustubh R.Patil, Kaustubh R.
1
Show details for Pennacchio, L. A.Pennacchio, L. A.
1
Show details for Perez, JuanaPerez, Juana
1
Show details for Perlova, OlenaPerlova, Olena
1
Show details for Pestarino, M.Pestarino, M.
2
Show details for Pinto, JPPinto, JP
1
Show details for Platt, D.Platt, D.
1
Show details for Podar, M.Podar, M.
1
Show details for Pohle, S.Pohle, S.
1
Show details for Pope, Philip B.Pope, Philip B.
1
Show details for Pope, Phillip B.Pope, Phillip B.
2
Show details for Pope, P. B.Pope, P. B.
2
Show details for Porto, GPorto, G
1
Show details for Pradella, SilkePradella, Silke
1
Show details for Pühler, AlfredPühler, Alfred
2
Show details for Pühler, A.Pühler, A.
1
Show details for Putnam, N. H.Putnam, N. H.
1
Show details for Quince, ChristopherQuince, Christopher
1
Show details for Rachid, ShwanRachid, Shwan
1
Show details for Raddatz, GünterRaddatz, Günter
1
Show details for Rast, J. P.Rast, J. P.
1
Show details for Reeder, JensReeder, Jens
1
Show details for Richardson, P.Richardson, P.
1
Show details for Richardson, P. M.Richardson, P. M.
1
Show details for Richardson, T. H.Richardson, T. H.
6
Show details for Rigoutsos, I.Rigoutsos, I.
1
Show details for Robertson, D. E.Robertson, D. E.
1
Show details for Robinson-Rechavi, M.Robinson-Rechavi, M.
1
Show details for Roch, G.Roch, G.
1
Show details for Rokhsar, D. S.Rokhsar, D. S.
1
Show details for Rosenau, FrankRosenau, Frank
1
Show details for Roune, LinusRoune, Linus
1
Show details for Rubin, E. M.Rubin, E. M.
1
Show details for Rückert, ChristianRückert, Christian
1
Show details for Rückert, C.Rückert, C.
1
Show details for Saiga, H.Saiga, H.
3
Show details for Salamov, A.Salamov, A.
1
Show details for Sasakura, Y.Sasakura, Y.
1
Show details for Sasse, FlorenzSasse, Florenz
1
Show details for Satake, M.Satake, M.
1
Show details for Satoh, N.Satoh, N.
1
Show details for Satou, Y.Satou, Y.
1
Show details for Scharfe, MarenScharfe, Maren
1
Show details for Scheffer, TobiasScheffer, Tobias
1
Show details for Schmidt, MichaelaSchmidt, Michaela
1
Show details for Schmitt, CorinnaSchmitt, Corinna
1
Show details for Schneiker, SusanneSchneiker, Susanne
1
Show details for Schneiker, S.Schneiker, S.
1
Show details for Schoen, ChristophSchoen, Christoph
1
Show details for Schramm-Glück, AnjaSchramm-Glück, Anja
1
Show details for Schubert, M.Schubert, M.
1
Show details for Schuster, Stephan C.Schuster, Stephan C.
1
Show details for Shapiro, H.Shapiro, H.
1
Show details for Shelokar, P. S.Shelokar, P. S.
1
Show details for Sherwood, N.Sherwood, N.
1
Show details for Shiina, T.Shiina, T.
1
Show details for Smith, WendySmith, Wendy
1
Show details for Smith, W.Smith, W.
1
Show details for Somerfield, PaulSomerfield, Paul
1
Show details for Sorek, R.Sorek, R.
1
Show details for Steele, Joshua A.Steele, Joshua A.
1
Show details for Stege, J. T.Stege, J. T.
5
Show details for Steinbrück, LarsSteinbrück, Lars
1
Show details for Stoye, J.Stoye, J.
1
Show details for Suciu, D.Suciu, D.
1
Show details for Suen, GarretSuen, Garret
1
Show details for Sundset, Monica A.Sundset, Monica A.
1
Show details for Suter, MarkSuter, Mark
2
Show details for Szeto, E.Szeto, E.
1
Show details for Takatori, N.Takatori, N.
1
Show details for Tamayo, G.Tamayo, G.
1
Show details for Tello, J.Tello, J.
1
Show details for Temperton, BenTemperton, Ben
1
Show details for Treuner-Lange, AnkeTreuner-Lange, Anke
1
Show details for Tringe, Susannah G.Tringe, Susannah G.
4
Show details for Tringe, S. G.Tringe, S. G.
1
Show details for Tsirigos, A.Tsirigos, A.
2
Show details for Turnbaugh, Peter J.Turnbaugh, Peter J.
1
Show details for Tusche, ChristinaTusche, Christina
1
Show details for Valencia, Alfonso (ed.)Valencia, Alfonso (ed.)
1
Show details for Velicer, GregoryVelicer, Gregory
2
Show details for Vieira, JVieira, J
1
Show details for Vogel, UlrichVogel, Ulrich
1
Show details for Vopalensky, P.Vopalensky, P.
1
Show details for Vorhölter, Frank-JörgVorhölter, Frank-Jörg
1
Show details for Wada, S.Wada, S.
1
Show details for Warnecke, F.Warnecke, F.
1
Show details for Weissman, Kira J.Weissman, Kira J.
1
Show details for Welch, Roy D.Welch, Roy D.
1
Show details for Wenzel, Silke C.Wenzel, Silke C.
1
Show details for Whitworth, David E.Whitworth, David E.
1
Show details for Wilhelm, SusanneWilhelm, Susanne
1
Show details for Wittmann, ChristophWittmann, Christoph
1
Show details for Xu, A.Xu, A.
1
Show details for Yatsunenko, TanyaYatsunenko, Tanya
1
Show details for Ye, Y.Ye, Y.
1
Show details for Yoshida, K.Yoshida, K.
1
Show details for Yoshizaki, F.Yoshizaki, F.
1
Show details for Yu, J. K.Yu, J. K.
1
Show details for Zellermann, E. M.Zellermann, E. M.
1
Show details for Zhang, Q.Zhang, Q.
1
Show details for Zhang, X.Zhang, X.
1
Show details for Zmasek, C. M.Zmasek, C. M.
391
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