# | | Year | Author(s) [non member] | | Title | Type | |
1 |
| Aboushadi, N. |
| |
1 |
| |
1 |
| Acosta, L. G. |
| |
3 |
| |
1 |
| Affourtit, Jason |
| |
1 |
| |
1 |
| Albalat, R. |
| |
1 |
| |
2 |
| Almeida, S |
| |
1 |
| |
2 |
| Alves, H |
| |
1 |
| |
4 |
| Barry, K. |
| |
1 |
| |
1 |
| Bartels, D. |
| |
1 |
| |
1 |
| Bekel, T. |
| |
1 |
| |
1 |
| Beyer, Stefan |
| |
1 |
| |
1 |
| Blom, Jochen |
| |
1 |
| |
1 |
| Bode, Edna |
| |
1 |
| |
1 |
| Bolten, Christoph |
| |
1 |
| |
2 |
| Brazdil, P |
| |
1 |
| |
1 |
| Bruce, D. C. |
| |
1 |
| |
1 |
| Burger, A. |
| |
1 |
| |
1 |
| Candiani, S. |
| |
1 |
| |
2 |
| Cardoso, CS |
| |
1 |
| |
1 |
| Chang, C. |
| |
1 |
| |
1 |
| Cheng, J.-F. |
| |
1 |
| |
1 |
| Chistoserdova, L. |
| |
1 |
| |
1 |
| Claus, Heike |
| |
1 |
| |
1 |
| Copeland, A. C. |
| |
2 |
| |
1 |
| Dalevi, D. |
| |
1 |
| de Bruijn, Frans J. (ed.) |
| |
1 |
| de Jong, P. J. |
| |
2 |
| |
1 |
| Dietz, Laura |
| |
1 |
| |
1 |
| Djordjevic, G. |
| |
1 |
| |
1 |
| Egholm, Michael |
| |
1 |
| |
1 |
| Eijsink, Vincent G.H. |
| |
1 |
| |
1 |
| Engemann, J. |
| |
1 |
| |
1 |
| Ferrier, D. E. |
| |
1 |
| |
1 |
| Flügel, M. |
| |
1 |
| |
1 |
| Friedrich, Torben |
| |
1 |
| |
1 |
| Frosch, Matthias |
| |
1 |
| |
1 |
| Gaigalat, Lars |
| |
1 |
| |
1 |
| Garcia-Fernàndez, J. |
| |
1 |
| |
2 |
| Gartner, A |
| |
1 |
| |
1 |
| Ghassemian, M. |
| |
1 |
| |
1 |
| Gilbert, Jack A. |
| |
1 |
| |
1 |
| Godzik, A. |
| |
3 |
| |
1 |
| Goesmann, A. |
| |
1 |
| |
1 |
| Gordon, Jeffrey I. |
| |
1 |
| |
1 |
| Green, B. D. |
| |
1 |
| |
1 |
| Grigoriev, I. |
| |
1 |
| |
1 |
| Groeger, Carolin |
| |
1 |
| |
1 |
| Haider, Peter |
| |
1 |
| |
1 |
| Hausmann, Jürgen |
| |
1 |
| |
1 |
| Hernández, M. |
| |
1 |
| |
1 |
| Holland, L. Z. |
| |
1 |
| |
1 |
| Hosomichi, K. |
| |
1 |
| |
1 |
| Hugenholtz, Philip |
| |
5 |
| |
1 |
| Huse, Susan |
| |
1 |
| |
1 |
| Inoko, H. |
| |
3 |
| |
1 |
| Jayaraman, V. K. |
| |
1 |
| |
1 |
| Jelsbak, Lotte |
| |
1 |
| |
1 |
| Jones, M. |
| |
1 |
| |
1 |
| Kaiser, Olaf |
| |
1 |
| |
1 |
| Kalinowski, Jörn |
| |
1 |
| |
1 |
| Kalyuzhnaya, M. G. |
| |
1 |
| |
1 |
| Kasamatsu, J. |
| |
1 |
| |
1 |
| Kawashima, T. |
| |
1 |
| |
1 |
| Keith, Jonathan M. (ed.) |
| |
1 |
| |
1 |
| Kirchner, O. |
| |
1 |
| |
1 |
| Knauber, Tina |
| |
2 |
| |
1 |
| Kobayashi, M. |
| |
3 |
| |
1 |
| Konietzny, Sebastian G.A. |
| |
1 |
| |
1 |
| Korzeniewski, F. |
| |
1 |
| |
2 |
| Krause, Lutz |
| |
2 |
| |
1 |
| Krug, Daniel |
| |
1 |
| |
1 |
| Kulkarni, Abhijit |
| |
1 |
| |
1 |
| Kunin, V. |
| |
1 |
| |
1 |
| Kyrpides, Nikos C. |
| |
2 |
| |
2 |
| Lacerda, R |
| |
1 |
| |
2 |
| Lapidus, A. |
| |
1 |
| |
1 |
| Leadbetter, J. R. |
| |
1 |
| |
1 |
| Levine, S. R. |
| |
1 |
| |
1 |
| Linke, Bukhard |
| |
2 |
| |
1 |
| Linke, B. |
| |
1 |
| |
1 |
| Liu, Wen-Tso |
| |
1 |
| |
1 |
| Lukassen, Susanne |
| |
1 |
| |
1 |
| Lykidis, Athanasios |
| |
1 |
| |
1 |
| Mackenzie, Alasdair K. |
| |
1 |
| |
1 |
| Mahmud, Taifo |
| |
1 |
| |
1 |
| Markowitz, V. M. |
| |
1 |
| |
2 |
| Martin, H. G. |
| |
2 |
| |
1 |
| Mathur, E. J. |
| |
1 |
| |
1 |
| Mavromatis, K. |
| |
23 |
| |
| | 2011 | Konietzny, Sebastian G.A.
[Dietz, Laura]
McHardy, Alice | | Inferring functional modules of protein families with probabilistic topic models
In: BMC Bioinformatics [12], 141 | Journal Article | |
| | 2011 | [Pope, P. B.]
[Smith, W.]
[Denman, S. E.]
[Tringe, S. G.]
[Barry, K.]
[Hugenholtz, P.]
[McSweeney, C. S.]
McHardy, Alice
[Morrison, M.] | | Isolation of Succinivibrionaceae Implicated in Low Methane Emissions from Tammar Wallabies
In: Science [333], 646-648 | Journal Article | |
| | 2011 | [Lykidis, Athanasios]
[Chen, Chia-Lung]
[Tringe, Susannah G.]
McHardy, Alice
[Copeland, Alex]
[Kyrpides, Nikos C.]
[Hugenholtz, Philip]
[Macarie, Hervé]
[Olmos, Alejandro]
[Monroy, Oscar]
[Liu, Wen-Tso] | | Multiple syntrophic interactions in a terephthalate-degrading methanogenic consortium
In: The ISME Journal [5], 122-130 | Journal Article | |
| | 2011 | McHardy, Alice
Patil, Kaustubh R. | | Phylogenetic binning of metagenome sequence samples
In: Handbook of molecular microbial ecology. - Vol. 1, Metagenomics and complementary approaches, 353-358 | Part of a Book | |
| | 2011 | Patil, Kaustubh R.
[Haider, Peter]
[Pope, Philip B.]
[Turnbaugh, Peter J.]
[Morrison, Mark]
[Scheffer, Tobias]
McHardy, Alice | | Taxonomic metagenome sequence assignment with structured output models
In: Nature Methods [8], 191-192 | Journal Article | |
| | 2011 | [Adams, Ben]
McHardy, Alice | | The impact of seasonal and year-round transmission regimes on the evolution of influenza A virus
In: Proceedings of the Royal Society / B, Biological Sciences [278], 2249-2256 | Journal Article | |
| | 2010 | [Pope, P. B.]
[Denman, S. E.]
[Jones, M.]
[Tringe, S. G.]
[Barry, K.]
[Malfatti, S. A.]
McHardy, Alice
[Cheng, J.-F.]
[Hugenholtz, P.]
[McSweeney, C. S.]
[Morrison, M.] | | Adaptation to herbivory by the Tammar wallaby includes bacterial and glycoside hydrolase profiles different from other herbivores
In: Proceedings of the National Academy of Sciences of the United States of America [107], 14793-14798 | Journal Article | |
| | 2010 | Steinbrück, Lars
McHardy, Alice | | Allele dynamics plots for the study of evolutionary dynamics in viral populations
In: Nucleic Acids Research [39], 1-12 | Electronic Journal Article | |
| | 2010 | [Turnbaugh, Peter J.]
[Quince, Christopher]
[Faith, Jeremiah J.]
McHardy, Alice
[Yatsunenko, Tanya]
[Niazi, Faheem]
[Affourtit, Jason]
[Egholm, Michael]
[Henrissat, Bernhard]
[Knight, Rob]
[Gordon, Jeffrey I.] | | Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins
In: Proceedings of the National Academy of Sciences of the United States of America [107], 7503-7508 | Journal Article | |
| | 2009 | McHardy, Alice
Patil, Kaustubh | | Informatik für die Metagenomforschung: Einblicke in die Welt der unkultivierbaren Mikroorganismen
In: Tätigkeitsberichte 2009 der Institute, 1-6 | Part of a Book | |
| | 2009 | McHardy, Alice
Adams, Ben | | The role of genomics in tracking the evolution of influenza A virus
In: PLOS Pathogens [5], e1000566:1-e1000566:6 | Journal Article | |
| | 2009 | Adams, Ben
McHardy, Alice
[Lundegaard, C.]
Lengauer, Thomas | | Viral Bioinformatics
In: Modern Genome Annotation : the Biosapiens Network, 429-452 | Part of a Book | |
| | 2008 | McHardy, Alice | | Finding genes in genome sequence
In: Bioinformatics. - Vol. 1, Data, Sequence Analysis and Evolution, 163-77
In: Methods in Molecular Biology [452], 163-77 | Part of a Book | |
| | 2008 | [Kalyuzhnaya, M. G.]
[Lapidus, A.]
[Ivanova, N.]
[Copeland, A. C.]
McHardy, Alice
[Szeto, E.]
[Salamov, A.]
[Grigoriev, I. V.]
[Suciu, D.]
[Levine, S. R.]
[Markowitz, V. M.]
[Rigoutsos, I.]
[Tringe, S. G.]
[Bruce, D. C.]
[Richardson, P. M.]
[Lidstrom, M. E.]
[Chistoserdova, L.] | | High-resolution metagenomics targets specific functional types in complex microbial communities
In: Nature Biotechnology [26], 1029-34 | Journal Article | |
| | 2008 | McHardy, Alice
Steinbrück, Lars | | Method and system for building a phylogeny from genetic sequences and using the same for recommendation of vaccine strain candidates for the influenza virus | Miscellaneous | |
| | 2008 | [Holland, L. Z.]
[Albalat, R.]
[Azumi, K.]
[Benito-Gutiérrez, E.]
[Blow, M. J.]
[Bronner-Fraser, M.]
[Brunet, F.]
[Butts, T.]
[Candiani, S.]
[Dishaw, L. J.]
[Ferrier, D. E.]
[Garcia-Fernàndez, J.]
[Gibson-Brown, J. J.]
[Gissi, C.]
[Godzik, A.]
[Hallböök, F.]
[Hirose, D.]
[Hosomichi, K.]
[Ikuta, T.]
[Inoko, H.]
[Kasahara, M.]
[Kasamatsu, J.]
[Kawashima, T.]
[Kimura, A.]
[Kobayashi, M.]
[Kozmik, Z.]
[Kubokawa, K.]
[Laudet, V.]
[Litman, G. W.]
McHardy, Alice
[Meulemans, D.]
[Nonaka, M.]
[Olinski, R. P.]
[Pancer, Z.]
[Pennacchio, L. A.]
[Pestarino, M.]
[Rast, J. P.]
[Rigoutsos, I.]
[Robinson-Rechavi, M.]
[Roch, G.]
[Saiga, H.]
[Sasakura, Y.]
[Satake, M.]
[Satou, Y.]
[Schubert, M.]
[Sherwood, N.]
[Shiina, T.]
[Takatori, N.]
[Tello, J.]
[Vopalensky, P.]
[Wada, S.]
[Xu, A.]
[Ye, Y.]
[Yoshida, K.]
[Yoshizaki, F.]
[Yu, J. K.]
[Zhang, Q.]
[Zmasek, C. M.]
[de Jong, P. J.]
[Osoegawa, K.]
[Putnam, N. H.]
[Rokhsar, D. S.]
[Satoh, N.]
[Holland, P. W.] | | The amphioxus genome illuminates vertebrate origins and cephalochordate biology
In: Genome Research [18], 1100-1111 | Journal Article | |
| | 2008 | [Gartemann, K. H.]
[Abt, B.]
[Bekel, T.]
[Burger, A.]
[Engemann, J.]
[Flügel, M.]
[Gaigalat, L.]
[Goesmann, A.]
[Gräfen, I.]
[Kalinowski, J.]
[Kaup, O.]
[Kirchner, O.]
[Krause, L.]
[Linke, B.]
McHardy, Alice
[Meyer, F.]
[Pohle, S.]
[Rückert, C.]
[Schneiker, S.]
[Zellermann, E. M.]
[Pühler, A.]
[Eichenlaub, R.]
[Kaiser, O.]
[Bartels, D.] | | The genome sequence of the tomato-pathogenic actinomycete Clavibacter michiganensis subsp. michiganensis NCPPB382 reveals a large island involved in pathogenicity
In: The Journal of Bacteriology [190], 2138-2149 | Journal Article | |
| | 2007 | McHardy, Alice
[Martin, H. G.]
[Tsirigos, A.]
[Hugenholtz, P.]
[Rigoutsos, I.] | | Accurate phylogenetic classification of variable-length DNA fragments.
In: Nature Methods [4], 63-72 | Journal Article | |
| | 2007 | [Schneiker, Susanne]
[Perlova, Olena]
[Kaiser, Olaf]
[Gerth, Klaus]
[Alici, Aysel]
[Altmeyer, Matthias]
[Bartels, Daniela]
[Bekel, Thomas]
[Beyer, Stefan]
[Bode, Edna]
[Bode, Helge]
[Bolten, Christoph]
[Choudhuri, Jomuna]
[Doss, Sabrina]
[Elnakady, Yasser]
[Frank, Bettina]
[Gaigalat, Lars]
[Goesmann, Alexander]
[Groeger, Carolin]
[Gross, Frank]
[Jelsbak, Lars]
[Jelsbak, Lotte]
[Kalinowski, Jörn]
[Kegler, Carsten]
[Knauber, Tina]
Konietzny, Sebastian
[Kopp, Maren]
[Krause, Lutz]
[Krug, Daniel]
[Linke, Bukhard]
[Mahmud, Taifo]
[Martinez-Arias, Rosa]
McHardy, Alice
[Merai, Michelle]
[Meyer, Folker]
[Mormann, Sascha]
[Muñoz-Dorado, Jose]
[Perez, Juana]
[Pradella, Silke]
[Rachid, Shwan]
[Raddatz, Günter]
[Rosenau, Frank]
[Rückert, Christian]
[Sasse, Florenz]
[Scharfe, Maren]
[Schuster, Stephan C.]
[Suen, Garret]
[Treuner-Lange, Anke]
[Velicer, Gregory]
[Vorhölter, Frank-Jörg]
[Weissman, Kira J.]
[Welch, Roy D.]
[Wenzel, Silke C.]
[Whitworth, David E.]
[Wilhelm, Susanne]
[Wittmann, Christoph]
[Blöcker, Helmut]
[Pühler, Alfred]
[Müller, Rolf] | | Complete genome sequence of the myxobacterium Sorangium cellulosum.
In: Nature Biotechnology [27], 281-1289 | Journal Article | |
| | 2007 | McHardy, Alice
[Krause, L.]
[Nattkemper, T. W.]
[Puhler, A.]
[Stoye, J.]
[Meyer, F.] | | GISMO - prokaryotic gene identification using a support vector machine for ORF classification.
In: Nucleic Acids Research [32], 540-549 | Journal Article | |
| | 2007 | [Warnecke, F.]
[Luginbühl, P.]
[Ivanova, N.]
[Ghassemian, M.]
[Richardson, T. H.]
[Stege, J. T.]
[Cayouette, M.]
McHardy, Alice
[Djordjevic, G.]
[Aboushadi, N.]
[Sorek, R.]
[Tringe, S. G.]
[Podar, M.]
[Martin, H. G.]
[Kunin, V.]
[Dalevi, D.]
[Madejska, J.]
[Kirton, E.]
[Platt, D.]
[Szeto, E.]
[Salamov, A.]
[Barry, K.]
[Mikhailova, N.]
[Kyrpides, N. C.]
[Matson, E. G.]
[Ottesen, E. A.]
[Zhang, X.]
[Hernández, M.]
[Murillo, C.]
[Acosta, L. G.]
[Rigoutsos, I.]
[Tamayo, G.]
[Green, B. D.]
[Chang, C.]
[Rubin, E. M.]
[Mathur, E. J.]
[Robertson, D. E.]
[Hugenholtz, P.]
[Leadbetter, J. R.] | | Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite
In: Nature [450], 560-565 | Journal Article | |
| | 2007 | [Mavromatis, K.]
[Ivanova, N.]
[Barry, K.]
[Shapiro, H.]
[Goltsman, E.]
McHardy, Alice
[Rigoutsos, I.]
[Salamov, A.]
[Korzeniewski, F.]
[Land, M.]
[Lapidus, A.]
[Grigoriev, I.]
[Richardson, P.]
[Hugenholtz, P.]
[Kyrpides, N. C.] | | Use of simulated data sets to evaluate the fidelity of metagenomic processing methods.
In: Nature Methods [4], 495-500 | Journal Article | |
| | 2007 | McHardy, Alice
[Rigoutsos, I.] | | What's in the mix? Methods for the phylogenetic classification of metagenome sequence samples.
In: Current Opinion in Microbiology [10], 499-503 | Journal Article | |
3 |
| |
2 |
| McHardy, Alice C. |
| |
2 |
| |
1 |
| Meisinger-Henschel, Christine |
| |
1 |
| |
1 |
| Meulemans, D. |
| |
1 |
| |
2 |
| Meyer, F. |
| |
1 |
| |
1 |
| Monroy, Oscar |
| |
1 |
| |
2 |
| Morrison, Mark |
| |
2 |
| |
1 |
| Müller, Rolf |
| |
1 |
| |
1 |
| Muñoz-Dorado, Jose |
| |
1 |
| |
1 |
| Nattkemper, T. W. |
| |
1 |
| |
1 |
| Nonaka, M. |
| |
1 |
| |
1 |
| Olmos, Alejandro |
| |
1 |
| |
1 |
| Ottesen, E. A. |
| |
1 |
| |
6 |
| Patil, Kaustubh |
| |
1 |
| |
2 |
| Patil, Kaustubh R. |
| |
1 |
| |
1 |
| Perez, Juana |
| |
1 |
| |
1 |
| Pestarino, M. |
| |
2 |
| |
1 |
| Platt, D. |
| |
1 |
| |
1 |
| Pohle, S. |
| |
1 |
| |
1 |
| Pope, Phillip B. |
| |
2 |
| |
2 |
| Porto, G |
| |
1 |
| |
1 |
| Pühler, Alfred |
| |
2 |
| |
1 |
| Putnam, N. H. |
| |
1 |
| |
1 |
| Rachid, Shwan |
| |
1 |
| |
1 |
| Rast, J. P. |
| |
1 |
| |
1 |
| Richardson, P. |
| |
1 |
| |
1 |
| Richardson, T. H. |
| |
6 |
| |
1 |
| Robertson, D. E. |
| |
1 |
| |
1 |
| Roch, G. |
| |
1 |
| |
1 |
| Rosenau, Frank |
| |
1 |
| |
1 |
| Rubin, E. M. |
| |
1 |
| |
1 |
| Rückert, C. |
| |
1 |
| |
3 |
| Salamov, A. |
| |
1 |
| |
1 |
| Sasse, Florenz |
| |
1 |
| |
1 |
| Satoh, N. |
| |
1 |
| |
1 |
| Scharfe, Maren |
| |
1 |
| |
1 |
| Schmidt, Michaela |
| |
1 |
| |
1 |
| Schneiker, Susanne |
| |
1 |
| |
1 |
| Schoen, Christoph |
| |
1 |
| |
1 |
| Schubert, M. |
| |
1 |
| |
1 |
| Shapiro, H. |
| |
1 |
| |
1 |
| Sherwood, N. |
| |
1 |
| |
1 |
| Smith, Wendy |
| |
1 |
| |
1 |
| Somerfield, Paul |
| |
1 |
| |
1 |
| Steele, Joshua A. |
| |
1 |
| |
5 |
| Steinbrück, Lars |
| |
1 |
| |
1 |
| Suciu, D. |
| |
1 |
| |
1 |
| Sundset, Monica A. |
| |
1 |
| |
2 |
| Szeto, E. |
| |
1 |
| |
1 |
| Tamayo, G. |
| |
1 |
| |
1 |
| Temperton, Ben |
| |
1 |
| |
1 |
| Tringe, Susannah G. |
| |
4 |
| |
1 |
| Tsirigos, A. |
| |
2 |
| |
1 |
| Tusche, Christina |
| |
1 |
| |
1 |
| Velicer, Gregory |
| |
2 |
| |
1 |
| Vogel, Ulrich |
| |
1 |
| |
1 |
| Vorhölter, Frank-Jörg |
| |
1 |
| |
1 |
| Warnecke, F. |
| |
1 |
| |
1 |
| Welch, Roy D. |
| |
1 |
| |
1 |
| Whitworth, David E. |
| |
1 |
| |
1 |
| Wittmann, Christoph |
| |
1 |
| |
1 |
| Yatsunenko, Tanya |
| |
1 |
| |
1 |
| Yoshida, K. |
| |
1 |
| |
1 |
| Yu, J. K. |
| |
1 |
| |
1 |
| Zhang, Q. |
| |
1 |
| |
1 |
| Zmasek, C. M. |
| |
391 |
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