| Year | | Title | BibTeX cite key | |
| Gartemann, Abt, Bekel, Burger, Engemann, Flügel, Gaigalat, Goesmann, Gräfen, Kalinowski, Kaup, Kirchner, Krause, Linke, McHardy, Meyer, Pohle, Rückert, Schneiker, Zellermann, Pühler, Eichenlaub, Kaiser, Bartels |
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| Gilbert, Steele, Caporaso, Steinbrück, Reeder, Temperton, Huse, McHardy, Knight, Joint, Somerfield, Fuhrman, Field |
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| Holland, Albalat, Azumi, Benito-Gutiérrez, Blow, Bronner-Fraser, Brunet, Butts, Candiani, Dishaw, Ferrier, Garcia-Fernàndez, Gibson-Brown, Gissi, Godzik, Hallböök, Hirose, Hosomichi, Ikuta, Inoko, Kasahara, Kasamatsu, Kawashima, Kimura, Kobayashi, Kozmik, Kubokawa, Laudet, Litman, McHardy, Meulemans, Nonaka, Olinski, Pancer, Pennacchio, Pestarino, Rast, Rigoutsos, Robinson-Rechavi, Roch, Saiga, Sasakura, Satake, Satou, Schubert, Sherwood, Shiina, Takatori, Tello, Vopalensky, Wada, Xu, Ye, Yoshida, Yoshizaki, Yu, Zhang, Zmasek, de Jong, Osoegawa, Putnam, Rokhsar, Satoh, Holland |
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| Kalyuzhnaya, Lapidus, Ivanova, Copeland, McHardy, Szeto, Salamov, Grigoriev, Suciu, Levine, Markowitz, Rigoutsos, Tringe, Bruce, Richardson, Lidstrom, Chistoserdova |
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| Konietzny, Dietz, McHardy |
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| Lykidis, Chen, Tringe, McHardy, Copeland, Kyrpides, Hugenholtz, Macarie, Olmos, Monroy, Liu |
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| Mavromatis, Ivanova, Barry, Shapiro, Goltsman, McHardy, Rigoutsos, Salamov, Korzeniewski, Land, Lapidus, Grigoriev, Richardson, Hugenholtz, Kyrpides |
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| McHardy, Adams |
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| McHardy, Krause, Nattkemper, Puhler, Stoye, Meyer |
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| McHardy, Martin, Tsirigos, Hugenholtz, Rigoutsos |
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| McHardy, Rigoutsos |
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| Meisinger-Henschel, Schmidt, Lukassen, Linke, Krause, Konietzny, Goesmann, Howley, Chaplin, Suter, Hausmann |
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| Patil, Haider, Pope, Turnbaugh, Morrison, Scheffer, McHardy |
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| 2011 | | Taxonomic metagenome sequence assignment with structured output models
In: Nature Methods [8], 191-192 | Patil2011 | |
| Patil, Kulkarni |
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| Patil, Shelokar, Jayaraman, Kulkarni |
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| Pope, Denman, Jones, Tringe, Barry, Malfatti, McHardy, Cheng, Hugenholtz, McSweeney, Morrison |
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| Pope, Mackenzie, Gregor, Smith, Sundset, McHardy, Morrison, Eijsink |
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| Pope, Smith, Denman, Tringe, Barry, Hugenholtz, McSweeney, McHardy, Morrison |
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| Schneiker, Perlova, Kaiser, Gerth, Alici, Altmeyer, Bartels, Bekel, Beyer, Bode, Bode, Bolten, Choudhuri, Doss, Elnakady, Frank, Gaigalat, Goesmann, Groeger, Gross, Jelsbak, Jelsbak, Kalinowski, Kegler, Knauber, Konietzny, Kopp, Krause, Krug, Linke, Mahmud, Martinez-Arias, McHardy, Merai, Meyer, Mormann, Muñoz-Dorado, Perez, Pradella, Rachid, Raddatz, Rosenau, Rückert, Sasse, Scharfe, Schuster, Suen, Treuner-Lange, Velicer, Vorhölter, Weissman, Welch, Wenzel, Whitworth, Wilhelm, Wittmann, Blöcker, Pühler, Müller |
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| Schoen, Blom, Claus, Schramm-Glück, Brandt, Müller, Goesmann, Joseph, Konietzny, Kurzai, Schmitt, Friedrich, Linke, Vogel, Frosch |
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| Steinbrück, McHardy |
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| Turnbaugh, Quince, Faith, McHardy, Yatsunenko, Niazi, Affourtit, Egholm, Henrissat, Knight, Gordon |
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| Tusche, Steinbrück, McHardy |
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| Vieira, Cardoso, Pinto, Patil, Brazdil, Cruz, Mascarenhas, Lacerda, Gartner, Almeida, Alves, Porto |
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| Warnecke, Luginbühl, Ivanova, Ghassemian, Richardson, Stege, Cayouette, McHardy, Djordjevic, Aboushadi, Sorek, Tringe, Podar, Martin, Kunin, Dalevi, Madejska, Kirton, Platt, Szeto, Salamov, Barry, Mikhailova, Kyrpides, Matson, Ottesen, Zhang, Hernández, Murillo, Acosta, Rigoutsos, Tamayo, Green, Chang, Rubin, Mathur, Robertson, Hugenholtz, Leadbetter |
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