| # |  | | Author/Editor | | Title | Type | |
|---|
| 5 |
 | 2012 |
| |
| 1 |
|
| Nature Publishing Group, Basingstoke |
| |
| | | Gilbert, Jack A.
Steele, Joshua A.
Caporaso, J. Gregory
Steinbrück, Lars
Reeder, Jens
Temperton, Ben
Huse, Susan
McHardy, Alice C.
Knight, Rob
Joint, Ian
Somerfield, Paul
Fuhrman, Jed A.
Field, Dawn | | Defining seasonal marine microbial community dynamics
In: The ISME Journal [6], 298-308 | Journal Article | |
| 1 |
|
| Oxford University Press, Oxford |
| |
| | | Tusche, Christina
Steinbrück, Lars
McHardy, Alice Carolyn | | Detecting Patches of Protein Sites of Influenza A Viruses under Positive Selection
In: Molecular Biology and Evolution [29], 2063-2071 | Journal Article | |
| 3 |
|
| Public Library of Science, San Francisco, CA |
| |
| | | Patil, Kaustubh Raosaheb
Roune, Linus
McHardy, Alice Carolyn | | The PhyloPythiaS Web Server for Taxonomic Assignment of Metagenome Sequences
In: PLoS ONE [7], e38581,1-e38581,9 | Electronic Journal Article | |
| | | Pope, Phillip B.
Mackenzie, Alasdair K.
Gregor, Ivan
Smith, Wendy
Sundset, Monica A.
McHardy, Alice C.
Morrison, Mark
Eijsink, Vincent G.H. | | Metagenomics of the Svalbard Reindeer Rumen Microbiome Reveals Abundance of Polysaccharide Utilization Loci
In: PLoS ONE [7], e38571,1-e38571,10 | Electronic Journal Article | |
| | | Steinbrück, Lars
McHardy, Alice Carolyn | | Inference of Genotype–Phenotype Relationships in the Antigenic Evolution of Human Influenza A (H3N2) Viruses
In: PLoS Computational Biology [8], e1002492,1-e1002492,9 | Electronic Journal Article | |
| 5 |
| |
| 1 |
|
| AAAS |
| |
| | | Pope, P. B.
Smith, W.
Denman, S. E.
Tringe, S. G.
Barry, K.
Hugenholtz, P.
McSweeney, C. S.
McHardy, Alice
Morrison, M. | | Isolation of Succinivibrionaceae Implicated in Low Methane Emissions from Tammar Wallabies
In: Science [333], 646-648 | Journal Article | |
| 2 |
|
| Nature Publishing Group, London |
| |
| | | Lykidis, Athanasios
Chen, Chia-Lung
Tringe, Susannah G.
McHardy, Alice
Copeland, Alex
Kyrpides, Nikos C.
Hugenholtz, Philip
Macarie, Hervé
Olmos, Alejandro
Monroy, Oscar
Liu, Wen-Tso | | Multiple syntrophic interactions in a terephthalate-degrading methanogenic consortium
In: The ISME Journal [5], 122-130 | Journal Article | |
| | | Patil, Kaustubh R.
Haider, Peter
Pope, Philip B.
Turnbaugh, Peter J.
Morrison, Mark
Scheffer, Tobias
McHardy, Alice | | Taxonomic metagenome sequence assignment with structured output models
In: Nature Methods [8], 191-192 | Journal Article | |
| 1 |
|
| The Royal Society, London |
| |
| | | Adams, Ben
McHardy, Alice | | The impact of seasonal and year-round transmission regimes on the evolution of influenza A virus
In: Proceedings of the Royal Society / B, Biological Sciences [278], 2249-2256 | Journal Article | |
| 1 |
|
| Wiley-Blackwell, Chichester |
| |
| | | McHardy, Alice
Patil, Kaustubh R. | | Phylogenetic binning of metagenome sequence samples
In: Handbook of molecular microbial ecology. - Vol. 1, Metagenomics and complementary approaches, 353-358 | Part of a Book | |
| 3 |
| |
| 2 |
|
| National Academy of Sciences, Washington, DC |
| |
| | | Pope, P. B.
Denman, S. E.
Jones, M.
Tringe, S. G.
Barry, K.
Malfatti, S. A.
McHardy, Alice
Cheng, J.-F.
Hugenholtz, P.
McSweeney, C. S.
Morrison, M. | | Adaptation to herbivory by the Tammar wallaby includes bacterial and glycoside hydrolase profiles different from other herbivores
In: Proceedings of the National Academy of Sciences of the United States of America [107], 14793-14798 | Journal Article | |
| | | Turnbaugh, Peter J.
Quince, Christopher
Faith, Jeremiah J.
McHardy, Alice
Yatsunenko, Tanya
Niazi, Faheem
Affourtit, Jason
Egholm, Michael
Henrissat, Bernhard
Knight, Rob
Gordon, Jeffrey I. | | Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins
In: Proceedings of the National Academy of Sciences of the United States of America [107], 7503-7508 | Journal Article | |
| 1 |
|
| Oxford University Press, Oxford, UK |
| |
| | | Steinbrück, Lars
McHardy, Alice | | Allele dynamics plots for the study of evolutionary dynamics in viral populations
In: Nucleic Acids Research [39], 1-12 | Electronic Journal Article | |
| 3 |
| |
| 1 |
|
| Max-Planck-Gesellschaft, München, Germany |
| |
| | | McHardy, Alice
Patil, Kaustubh | | Informatik für die Metagenomforschung: Einblicke in die Welt der unkultivierbaren Mikroorganismen
In: Tätigkeitsberichte 2009 der Institute, 1-6 | Part of a Book | |
| 1 |
|
| Public Library of Science (PLoS), San Francisco, CA |
| |
| | | McHardy, Alice
Adams, Ben | | The role of genomics in tracking the evolution of influenza A virus
In: PLOS Pathogens [5], e1000566:1-e1000566:6 | Journal Article | |
| 1 |
|
| Springer, New York, NY |
| |
| | | Adams, Ben
McHardy, Alice
Lundegaard, C.
Lengauer, Thomas | | Viral Bioinformatics
In: Modern Genome Annotation : the Biosapiens Network, 429-452 | Part of a Book | |
| 6 |
| 2008 |
| |
| 1 |
|
| American Society for Microbiology, Washington, USA |
| |
| | | Gartemann, K. H.
Abt, B.
Bekel, T.
Burger, A.
Engemann, J.
Flügel, M.
Gaigalat, L.
Goesmann, A.
Gräfen, I.
Kalinowski, J.
Kaup, O.
Kirchner, O.
Krause, L.
Linke, B.
McHardy, Alice
Meyer, F.
Pohle, S.
Rückert, C.
Schneiker, S.
Zellermann, E. M.
Pühler, A.
Eichenlaub, R.
Kaiser, O.
Bartels, D. | | The genome sequence of the tomato-pathogenic actinomycete Clavibacter michiganensis subsp. michiganensis NCPPB382 reveals a large island involved in pathogenicity
In: The Journal of Bacteriology [190], 2138-2149 | Journal Article | |
| 1 |
|
| Cold Spring Harbour Lab. Press, Cold Spring Harbour, USA |
| |
| | | Holland, L. Z.
Albalat, R.
Azumi, K.
Benito-Gutiérrez, E.
Blow, M. J.
Bronner-Fraser, M.
Brunet, F.
Butts, T.
Candiani, S.
Dishaw, L. J.
Ferrier, D. E.
Garcia-Fernàndez, J.
Gibson-Brown, J. J.
Gissi, C.
Godzik, A.
Hallböök, F.
Hirose, D.
Hosomichi, K.
Ikuta, T.
Inoko, H.
Kasahara, M.
Kasamatsu, J.
Kawashima, T.
Kimura, A.
Kobayashi, M.
Kozmik, Z.
Kubokawa, K.
Laudet, V.
Litman, G. W.
McHardy, Alice
Meulemans, D.
Nonaka, M.
Olinski, R. P.
Pancer, Z.
Pennacchio, L. A.
Pestarino, M.
Rast, J. P.
Rigoutsos, I.
Robinson-Rechavi, M.
Roch, G.
Saiga, H.
Sasakura, Y.
Satake, M.
Satou, Y.
Schubert, M.
Sherwood, N.
Shiina, T.
Takatori, N.
Tello, J.
Vopalensky, P.
Wada, S.
Xu, A.
Ye, Y.
Yoshida, K.
Yoshizaki, F.
Yu, J. K.
Zhang, Q.
Zmasek, C. M.
de Jong, P. J.
Osoegawa, K.
Putnam, N. H.
Rokhsar, D. S.
Satoh, N.
Holland, P. W. | | The amphioxus genome illuminates vertebrate origins and cephalochordate biology
In: Genome Research [18], 1100-1111 | Journal Article | |
| 1 |
|
| European Patent No. 08020835.7 - 2201 |
| |
| | | McHardy, Alice
Steinbrück, Lars | | Method and system for building a phylogeny from genetic sequences and using the same for recommendation of vaccine strain candidates for the influenza virus | Miscellaneous | |
| 1 |
|
| Humana Press, Clifton, N.J., USA |
| |
| | | McHardy, Alice | | Finding genes in genome sequence
In: Bioinformatics. - Vol. 1, Data, Sequence Analysis and Evolution, 163-77
In: Methods in Molecular Biology [452], 163-77 | Part of a Book | |
| 1 |
|
| |
| | | Schoen, Christoph
Blom, Jochen
Claus, Heike
Schramm-Glück, Anja
Brandt, Petra
Müller, Tobias
Goesmann, Alexander
Joseph, Biju
Konietzny, Sebastian
Kurzai, Oliver
Schmitt, Corinna
Friedrich, Torben
Linke, Burkhard
Vogel, Ulrich
Frosch, Matthias | | Whole-genome comparison of disease and carriage strains provides insights into virulence evolution in Neisseria meningitidis
In: Proceedings of the National Academy of Sciences of the United States of America [105], 3473-3478 | Journal Article | |
| 1 |
|
| Nature American Pub., New York, USA |
| |
| | | Kalyuzhnaya, M. G.
Lapidus, A.
Ivanova, N.
Copeland, A. C.
McHardy, Alice
Szeto, E.
Salamov, A.
Grigoriev, I. V.
Suciu, D.
Levine, S. R.
Markowitz, V. M.
Rigoutsos, I.
Tringe, S. G.
Bruce, D. C.
Richardson, P. M.
Lidstrom, M. E.
Chistoserdova, L. | | High-resolution metagenomics targets specific functional types in complex microbial communities
In: Nature Biotechnology [26], 1029-34 | Journal Article | |
| 1 |
| |
| 1 |
|
| Elsevier |
| |
| | | McHardy, Alice
Rigoutsos, I. | | What's in the mix? Methods for the phylogenetic classification of metagenome sequence samples.
In: Current Opinion in Microbiology [10], 499-503 | Journal Article | |
| 23 |
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