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MPI-INF D3 Publications

MPI-INF D3 Publications

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Albrecht, MarioColor blindness
In: Nature Methods [7], 775
Altmann, André
Tolosi, Laura
Sander, Oliver
Lengauer, Thomas
Permutation importance: an unbiased feature importance measure
In: Bioinformatics [26], 1340-1347
Baumbach, JanOn the power and limits of evolutionary conservation - unraveling bacterial gene regulatory networks
In: Nucleic Acids Research [38], 7877-7884
Bock, Christoph
Tomazou, Eleni M.
Brinkman, Arie B.
Müller, Fabian
Simmer, Femke
Gu, Hongcang
Jäger, Natalie
Gnirke, Andreas
Stunnenberg, Hendrik G.
Meissner, Alexander
Attachment IconQuantitative comparison of genome-wide DNA methylation mapping technologies
In: Nature Biotechnology [28], 1106-1114
Bogojeska, Jasmina
Bickel, Steffen
Altmann, André
Lengauer, Thomas
Attachment IconDealing with sparse data in predicting outcomes of HIV combination therapies
In: Bioinformatics [26], 2085-2092
Bozek, Katarzyna
Rosahl, A. L.
Gaub, S.
Lorenzen, S.
Herzel, H.
Circadian transcription in liver
In: Biosystems [102], 61-69
Brunner, Susanne
Hurni, Severine
Streckeisen, Philipp
Mayr, Gabriele
Albrecht, Mario
Yahiaoui, Nabila
Keller, Beat
Intragenic allele pyramiding combines different specificities of wheat Pm3 resistance alleles
In: The Plant Journal [64], 433-445
Codoñer, Francisco M
Pou, Christian
Thielen, Alexander
García, Federico
Delgado, Rafael
Dalmau, David
Santos, José Ramon
Buzón, Maria José
Martínez-Picado, Javier Alvarez-Tejado, Miguel
Clotet, Bonaventura
Ruiz, Lidia
Paredes, Roger
Dynamic escape of pre-existing raltegravir-resistant HIV-1 from raltegravir selection pressure
In: Antiviral Research [88], 281-286
Däumer, Martin
Awerkiew, Sabine
Sierra Aragon, Saleto
Kartashev, Vladimir
Poplavskaja, Tatjana
Klein, Rolf
Sichtig, Nadine
Thielen, Bernhard
Lengauer, Thomas
Roomp, Kirsten
Pfister, Herbert
Kaiser, Rolf
Short Communication: Selection of Thymidine Analogue Resitance Mutational Patterns in Children from a Common HIV Type 1 Subtype G Source
In: AIDS Research and Human Retroviruses [26], 275-278
Ellinghaus, Eva
Ellinghaus, David
Stuart, Philip E.
Nair, Rajan P.
Debrus, Sophie
Raelson, John V.
Belouchi, Majid
Fournier, Hélène
Reinhard, Claudia
Ding, Jun
Li, Yun
Tejasvi, Trilokraj
Gudjonsson, Johann
Stoll, Stefan W.
Voorhees, John J.
Lambert, Sylviane
Weidinger, Stephan
Eberlein, Bernadette
Kunz, Manfred
Rahman, Proton
Gladman, Dafna D.
Gieger, Christian
Wichmann, H. Erich
Karlsen, Tom H.
Mayr, Gabriele
Albrecht, Mario
Kabelitz, Dieter
Mrowietz, Ulrich
Abecasis, Gonçalo R.
Elder, James T.
Schreiber, Stefan
Weichenthal, Michael
Franke, Andre
Genome-wide association study identifies a psoriasis susceptibility locus at TRAF3IP2
In: Nature Genetics [42], 991-995
Emig, Dorothea
Salomonis, Nathan
Baumbach, Jan
Lengauer, Thomas
Conklin, Bruce R.
Albrecht, Mario
AltAnalyze and DomainGraph: analyzing and visualizing exon expression data
In: Nucleic Acids Research [38], W755-W762
Franke, Andre
Balschun, Tobias
Sina, Christian
Ellinghaus, David
Häsler, Robert
Mayr, Gabriele
Albrecht, Mario
Wittig, Michael
Buchert, Eva
Nikolaus, Susanna
Gieger, Christian
Wichmann, H. Erich
Sventoraityte, Jurgita
Kupcinskas, Limas
Onnie, Clive M.
Gazouli, Maria
Anagnou, Nicholas P.
Strachan, David
McArdle, Wendy L.
Mathew, Christopher G.
Rutgeerts, Paul
Vermeire, Séverine
Vatn, Morten H.
Krawczak, Michael
Rosenstiel, Philip
Karlsen, Tom H.
Schreiber, Stefan
Genome-wide association study for ulcerative colitis identifies risk loci at 7q22 and 22q13 (IL17REL)
In: Nature Genetics [42], 292-294
Gu, Hongcang
Bock, Christoph
Mikkelsen, Tarjei S.
Jäger, Natalie
Smith, Zachary D.
Tomazou, Eleni
Gnirke, Andreas
Lander, Eric S.
Meissner, Alexander
Attachment IconGenome-scale DNA methylation mapping of clinical samples at single-nucleotide resolution
In: Nature Methods [7], 133-136
Harris, R. Alan
Wang, Ting
Coarfa, Cristian
Nagarajan, Raman P.
Hong, Chibo
Downey, Sara L.
Johnson, Brett E.
Fouse, Shaun D.
Delaney, Allen
Zhao, Yongjun
Olshen, Adam
Ballinger, Tracy
Zhou, Xin
Forsberg, Kevin J.
Gu, Junchen
Echipare, Lorigail
O'Geen, Heriette
Lister, Ryan
Pelizzola, Mattia
Xi, Yuanxin
Epstein, Charles B.
Bernstein, Bradley E.
Hawkins, R. David
Ren, Bing
Chung, Wen-Yu
Gu, Hongcang
Bock, Christoph
Gnirke, Andreas
Zhang, Michael Q.
Haussler, David
Ecker, Joseph R.
Li, Wei
Farnham, Peggy J.
Waterland, Robert a.
Meissner, Alexander
Marra, Marco A.
Hirst, Martin
Milosavljevic, Aleksandar
Costello, Joseph F.
Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications
In: Nature Biotechnology [28], 1097-1105
Lange, Christian Markus
Roomp, Kirsten
Dragan, Anette
Nattermann, Jacob
Michalk, Monika
Spengler, Ulrich
Weich, Viola
Lengauer, Thomas
Zeuzem, Stefan
Berg, Thoma
Sarrazin, Christoph
HLA class I allele associations with HCV genetic variants in patients with chronic HCV genotypes 1a or 1b infection
In: Journal of Hepatology [53], 1022-1028
Lengauer, Thomas
Altmann, André
Thielen, Alexander
Kaiser, Rolf
Chasing the AIDS Virus
In: Communications of the ACM [53], 66-74
McGovern, Rachel A
Thielen, Alexander
Mo, Theresa
Dong, Winnie
Woods, Conan K
Chapman, Douglass
Lewis, Marilyn
James, Ian
Heera, Jayvant
Valdez, Hernan
Harrigan, P Richard
Population-based V3 genotypic tropism assay: a retrospective analysis using screening samples from the A4001029 and MOTIVATE studies
In: AIDS [24], 2517-2525
Mihm, Ulrike
Hofmann, W.P.
Welsch, Christoph
Polta, A.
Lengauer, Thomas
Zeuzem, Stefan
Sarrazin, Christoph
Herrmann, E.
Effect of ribavirin on the frequency of RNAse L cleavage sites within the hepatitis C viral genome
In: Journal of Viral Hepatitis [17], 217-221
Ramírez, Fidel
Albrecht, Mario
Finding scaffold proteins in interactomes
In: Trends in Cell Biology [20], 2-4
Rhee, Soo-Yon
Margeridon-Thermet, Severin
Nguyen, Mindie
Liu, Tommy
Kagan, Ron
Beggel, Bastian
Verheyen, Jens
Kaiser, Rolf
Shafer, Robert
Attachment IconHepatitis B virus reverse transcriptase sequence variant database for sequence analysis and mutation discovery
In: Antiviral Research [88], 269-275
Schlicker, Andreas
Albrecht, Mario
FunSimMat update: new features for exploring functional similarity
In: Nucleic Acids Research [38], D244-D248
Schlicker, Andreas
Lengauer, Thomas
Albrecht, Mario
Improving disease gene prioritization using the semantic similarity of Gene Ontology terms
In: Bioinformatics [26], i561-i567
Swenson, Luke C.
Boehme, Richard
Thielen, Alexander
McGovern, Rachel A.
Harrigan, P. Richard
Genotypic determination of HIV-1 tropism in the clinical setting
In: HIV Therapy [4], 293-303
Swenson, Luke C.
Moores, Andrew
Low, Andrew J.
Thielen, Alexander
Dong, Winnie
Woods, Conan
Jensen, Mark A.
Wynhoven, Brian
Chan, Dennison
Glascock, Christopher
Harrigan, P. Richard
Improved detection of CXCR4-using HIV by V3 genotyping: application of population-based and "deep" sequencing to plasma RNA and proviral DNA
In: Journal of Acquired Immune Deficiency Syndromes [54], 506-510
Thielen, Alexander
Sichtig, Nadine
Kaiser, Rolf
Lam, Jeffrey
Harrigan, P. Richard
Lengauer, Thomas
Improved prediction of HIV-1 coreceptor usage with sequence information from the second hypervariable loop of gp120
In: Journal of Infectious Diseases [202], 1435-1443
Welker, Martin-Walter
Welsch, Christoph
Meyer, Aline
Antes, Iris
Albrecht, Mario
Forestier, Nicole
Kronenberger, Bernd
Lengauer, Thomas
Piiper, Albrecht
Zeuzem, Stefan
Sarrazin, Christoph
Dimerization of the hepatitis C virus nonstructural protein 4B depends on the integrity of an aminoterminal basic leucine zipper
In: Protein Science [19], 1327-1336
Wittkop, Tobias
Emig, Dorothea
Lange, Sita
Rahmann, Sven
Albrecht, Mario
Morris, John H.
Böcker, Sebastian
Stoye, Jens
Baumbach, Jan
Partitioning biological data with transitivity clustering
In: Nature Methods [7], 419-420
Wohlers, Inken
Domingues, Francisco S.
Klau, Gunnar W.
Towards optimal alignment of protein structure distance matrices
In: Bioinformatics [26], 2273-2280
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