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| Author/Editor | Year | Title | Type | Unit / Correlation | |
|---|---|---|---|---|---|
| Adams, Altucci, Antonarakis, Ballesteros, Beck, Bird, Bock, Boehm, Campo, Caricasole, Dahl, Dermitzakis, Enver, Esteller, Estivill, Ferguson-Smith, Fitzgibbon, Flicek, Giehl, Graf, Grosveld, Guigó, Gut, Helin, Jarvius, Küppers, Lehrach, Lengauer, Lernmark, Leslie, Loeffler, Macintyre, Mai, Martens, Minucci, Ouwehand, Pelicci, Pendeville, Porse, Rakyan, Reik, Schrappe, Schübeler, Seifert, Siebert, Simmons, Soranzo, Spicuglia, Stratton, Stunnenberg, Tanay, Torrents, Valencia, Vellenga, Vingron, Walter, Willcocks | 2012 | {BLUEPRINT} to decode the epigenetic signature written in blood | Journal Article | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics | |
| Alcaraz, Kucuk, Weile, Wipat, Baumbach | 2012 | KeyPathwayMiner - Detecting case-specific biological pathways by using expression data | Journal Article | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics Computational Systems Biology | |
| Bader | 2012 | Clustering epigenetic data using a {Dirichlet} process prior | Thesis - Master's thesis | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics | |
| Bastys | 2012 |  | {MAP} Kinase Docking Motifs in {HIV} Proteins | Thesis - Master's thesis | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics |
| Baumbach | 2012 | Integrative computational biology | Journal Article | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics | |
| Beggel, Neumann-Fraune, Doering, Lawyer, Kaiser, Verheyen, Lengauer | 2012 | Genotyping hepatitis B virus dual infections using population-based sequence data | Journal Article | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics | |
| Bhattacharyya, Feuerbach, Bhadra, Bandyopadhyay | 2012 | MicroRNA Transcription Start Site Prediction with Multi-objective Feature Selection | Journal Article | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics | |
| Bock | 2012 | Analysing and interpreting {DNA} methylation data | Journal Article | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics | |
| Bock, Lengauer | 2012 | Epigenom-{K}arten erstellen und nutzen | Journal Article | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics | |
| Bock, Lengauer | 2012 | Managing drug resistance in cancer: lessons from {HIV} therapy | Journal Article | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics | |
| Bogojeska, Lengauer | 2012 | Hierarchical {Bayes} Model for Predicting Effectiveness of {HIV} Combination Therapies | Journal Article | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics | |
| Bogojeska, Stöckel, Zazzi, Kaiser, Incardona, Rosen-Zvi, Lengauer | 2012 | History-alignment models for bias-aware prediction of virological response to {HIV} combination therapy | Proceedings Article | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics | |
| Bozek, Eckhardt, Sierra, Kaiser, Kräusslich, Müller, Lengauer | 2012 | An expanded model of {HIV} cell entry phenotype based on multi-parameter single-cell data | Journal Article | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics | |
| Calvanese, Fernandez, Urdinguio, Suarez-Álvarez, Mangas, Pérez-García, Bueno, Montes, Ramos-Mejía, Martínez-Camblor, Ferrero, Assenov, Bock, Menendez, Carrera, Lopez-Larrea, Fraga | 2012 | A promoter {DNA} demethylation landscape of human hematopoietic differentiation | Journal Article | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics | |
| Dietzen, Zotenko, Hildebrandt, Lengauer | 2012 | On the Applicability of Elastic Network Normal Modes in Small-Molecule Docking | Journal Article | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics | |
| Doncheva, Assenov, Domingues, Albrecht | 2012 | Topological analysis and interactive visualization of biological networks and protein structures | Journal Article | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics | |
| Doncheva, Kacprowski, Albrecht | 2012 | Recent approaches to the prioritization of candidate disease genes | Journal Article | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics | |
| Eldarov | 2012 | Modeling influenza evolution in response to immune system pressure | Thesis - Master's thesis | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics | |
| Emig, Blankenburg, Ramírez, Albrecht | 2012 | Functional characterization of human genes from exon expression and {RNA} interference results | Part of a Book | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics | |
| Faria, Schlicker, Pesquita, Bastos, Ferreira, Albrecht, Falcão | 2012 | Mining {GO} annotations for improving annotation consistency | Electronic Journal Article | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics | |
| Fernandez, Assenov, Martin-Subero, Balint, Siebert, Taniguchi, Yamamoto, Hidalgo, Tan, Galm, Ferrer, Sanchez-Cespedes, Villanueva, Carmona, Sanchez-Mut, Berdasco, Moreno, Capella, Monk, Ballestar, Ropero, Martinez, Sanchez-Carbayo, Prosper, Agirre, Fraga, Gran˜a, Perez-Jurado, Mora, Puig, Prat, Badimon, Puca, Meltzer, Lengauer, Bridgewater, Bock, Esteller | 2012 | A {DNA} methylation fingerprint of 1628 human samples | Journal Article | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics Computational Epigenetics | |
| Feuerbach, Halachev, Assenov, Mueller, Bock, Lengauer | 2012 | Analyzing epigenome data in context of genome evolution and human diseases | Part of a Book | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics | |
| Galata | 2012 | Applying {Lasso} regression to related cell types for gene network astimation | Thesis - Bachelor thesis | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics | |
| Garai, Zeke, Gógl, Töro, Fördos, Blankenburg, Bárkai, Varga, Alexa, Emig, Albrecht, Reményi | 2012 | Specificity of linear motifs that bind to a common mitogen-activated protein kinase docking groove | Journal Article | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics | |
| Halachev, Bast, Albrecht, Lengauer, Bock | 2012 | | EpiExplorer: live exploration and global analysis of large epigenomic datasets | Electronic Journal Article | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics |
| Halachev, Bast, Albrecht, Lengauer, Bock | 2012 | EpiExplorer: live exploration and global analysis of large epigenomic datasets | Journal Article | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics | |
| Hauschild, Baumbach, Baumbach | 2012 | | Integrated statistical learning of metabolic ion mobility spectrometry profiles for pulmonary disease identification | Electronic Journal Article | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics Computational Systems Biology |
| Hauschild, Schneider, Pauling, Rupp, Jang, Baumbach, Baumbach | 2012 | | Computational Methods for Metabolomic Data Analysis of Ion Mobility Spectrometry Data - Reviewing the State of the Art | Electronic Journal Article | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics Computational Systems Biology |
| Heger, Thielen, Gilles, Obermeier, Lengauer, Kaiser, Trapp | 2012 | {APOBEC3G/F} a one possible driving source for co-receptor switch of the human immunodeficiency virus-1 | Journal Article | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics | |
| Kalaghatgi | 2012 | A Phylodynamic Study of {HIV} Transmission Networks in Europe | Thesis - Master's thesis | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics | |
| Kalinina, Oberwinkler, Glass, Kräusslich, Russell, Briggs | 2012 | Computational Identification of Novel Amino-Acid Interactions in {HIV} Gag via Correlated Evolution | Electronic Journal Article | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics | |
| Klingen | 2012 | Automatic Recombination Analysis Using {Recoo} and {Mebitoo} | Thesis - Bachelor thesis | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics | |
| König | 2012 | Automatic detection of loss of heterozygosity in cancer | Thesis - Master's thesis | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics | |
| Koser | 2012 | Reconstructing anecestral methylation states in phylogenetic trees | Thesis - Master's thesis | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics | |
| Lawyer, Schülter, Kaiser, Reuter, Oette, Lengauer | 2012 | | Endogenous or exogenous spreading of {HIV-1} in {N}ordrhein-{W}estfalen, {G}ermany, investigated by phylodynamic analysis of the {RESINA} {S}tudy cohort | Journal Article | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics |
| Lengauer | 2012 | Bioinformatical Assistance of Selecting Anti-{HIV} Therapies: {Where} Do We Stand? | Journal Article | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics | |
| Lengauer, Albrecht, Domingues | 2012 | Computational Biology | Part of a Book | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics | |
| Mekhubad, Bock, de Boer, Kiskinis, Meissner, Eggan | 2012 | Erosion of dosage compensation impacts human {iPSC} disease modeling | Journal Article | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics | |
| Mikeska, Bock, Do, Dobrovic | 2012 | {DNA} methylation biomarkers in cancer: Progress towards clinical implementation | Journal Article | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics | |
| Müller | 2012 | Extracting pathways from biological networks incorporating omics data, introducing a webinterface for {KeyPathwayMiner} | Thesis - Master's thesis | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics | |
| Obermeier, Camacho, Charpentier, Deschamps, Eberle, Gürtler, Ruelle, Pironti, Brun-Veziet, Stürmer, Kaiser | 2012 | HIV2EU: supporting standardized {HIV}-2 drug resistance interpretation in Europe | Poster | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics | |
| Obermeier, Pironti, Berg, Braun, Däumer, Eberle, Ehret, Kaiser, Kleinkauf, Korn, Kücherer, Müller, Noah, Stürmer, Thielen, Wolf, Walter | 2012 | HIV-GRADE: A Publicly Available, Rules-Based Drug Resistance Interpretation Algorithm Integrating Bioinformatic Knowledge | Journal Article | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics | |
| Oette, Schulter, Rosen-Zvi, Peres, Zazzi, Sonnerborg, Struck, Altmann, Kaiser | 2012 | Efficacy of antiretroviral therapy switch in {HIV}-infected patients: A 10-year analysis of the {EuResist} cohort | Journal Article | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics | |
| Pauling, Röttger, Neuner, Salgado, Collado-Vides, Kalaghatgi, Azevedo, Tauch, Pühler, Baumbach | 2012 | On the trail of {EHEC/EAEC} - unraveling the gene regulatory networks of human pathogenic Escherichia coli bacteria | Journal Article | Max-Planck-Institut für Informatik Computational Systems Biology | |
| Pauling, Röttger, Tauch, Azevedo, Baumbach | 2012 | CoryneRegNet 6.0 - Updated database content, new analysis methods and novel features focusing on community demands | Journal Article | Max-Planck-Institut für Informatik Computational Systems Biology | |
| Pfeifer, Lengauer | 2012 | | Improving {HIV} coreceptor usage prediction in the clinic using hints from next-generation sequencing data | Journal Article | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics |
| Pironti, Lengauer, Kaiser, Schülter, Verheyen | 2012 | Characterization of {HIV-1} {Gag} Subtype {C} | Poster | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics | |
| Ramirez | 2012 | Novel Approaches to the Integration and Analysis of Systems Biology | Thesis - Doctoral dissertation | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics | |
| Ramírez, Lawyer, Albrecht | 2012 | Novel search method for the discovery of functional relationships | Journal Article | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics | |
| Reppas, Lawyer | 2012 | | Low k-shells identify bridge elements critical to disease flow in small-world networks | Proceedings Article | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics |
| Reuter, Oette, Kaiser, Lengauer, Fätkenheuer, Rockstroh, Knechten, Häussinger | 2012 | Risk factors associated with older age in treatment-naive {HIV}-positive patients | Journal Article | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics | |
| Rost, Gaasterland, Lengauer, Linial, Markel, McKay, Schneider, Horton, Kelso | 2012 | Paving the future: finding suitable {ISMB} venues | Journal Article | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics | |
| Röttger, Kreutzer, Duong Vu, Wittkop, Baumbach | 2012 | Online Transitivity Clustering of Biological Data with Missing Values | Electronic Proceedings Article | Max-Planck-Institut für Informatik Computational Systems Biology | |
| Röttger, Rueckert, Taubert, Baumbach | 2012 | How Little Do We Actually Know? - {On} the Size of Gene Regulatory Networks. | Journal Article | Max-Planck-Institut für Informatik Computational Systems Biology | |
| Schuelter, Lübcke, Jensen, Zazzi, Sönnerborg, Lengauer, Incardona, Camacho, Schmit, Clotet, Kaiser, Pironti | 2012 | Etravirine in protease inhibitor-free antiretroviral combination therapies | Poster | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics | |
| Setty | 2012 | Multi-scale computational modeling of developmental biology | Journal Article | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics | |
| Sierra, Dzbowski, Pironti, Gueney, Thielen, Reuter, Esser, Fätkenheuer, Lengauer, Hider, Hoffmann, Pfister, Jensen, Kaiser | 2012 | Optimisation of baseline genotypic testing for safe and efficient maraviroc administration | Poster | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics | |
| Simmer, Brinkman, Assenov, Matarese, Kaan, Sabatino, Villanueva, Huertas, Esteller, Lengauer, Bock, Colantuoni, Altucci, Stunnenberg | 2012 | Comparative genome-wide {DNA} methylation analysis of colorectal tumor and matched normal tissues | Journal Article | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics | |
| Soares, Abreu, Ramos, Cerdeira, Silva, Baumbach, Trost, Tauch, Hirata, Mattos-Guaraldi, Miyoshi, Azevedo | 2012 | PIPS: Pathogenicity Island Prediction Software | Electronic Journal Article | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics | |
| Speicher | 2012 | Towards the identification of cancer subtypes by integrative clustering of molecular data | Thesis - Master's thesis | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics | |
| Thielen, Lengauer | 2012 | Geno2pheno[454]: A Web Server for the Prediction of {HIV-1} Coreceptor Usage from Next-Generation Sequencing Data | Journal Article | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics | |
| Tolosi | 2012 | Finding Regions of Aberrant {DNA} Copy Number Associated With Tumor Phenotype | Thesis - Doctoral dissertation | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics | |
| Welsch, Schweizer, Shimakami, Domingues, Kim, Lemon, Antes | 2012 | Ketoamide Resistance and Hepatitis {C} Virus Fitness in {Val55} Variants of the {NS3} Serine Protease | Journal Article | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics | |
| Welsch, Shimakami, Hartmann, Yang, Domingues, Lengauer, Zeuzem, Lemon | 2012 | Peptidomimetic Escape Mechanisms Arise via Genetic Diversity in the Ligand-Binding Site of the Hepatitis {C} Virus {NS3/4A} Serine Protease | Journal Article | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics | |
| Xi, Bock, Müller, Sun, Meissner, Li | 2012 | RRBSMAP: a fast, accurate and user-friendly alignment tool for reduced representation bisulfite sequencing | Journal Article | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics | |
| Zazzi, Incardona, Rosen-Zvi, Prosperi, Lengauer, Altmann, Sonnerborg, Lavee, Schülter, Kaiser | 2012 | Predicting Response to Antiretroviral Treatment by Machine Learning: The {EuResist} Project | Journal Article | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics | |
| Zeidler | 2012 | Cloudbasierte Analyse von viralen Sequenzdaten der neuesten Generation | Thesis - Bachelor thesis | Max-Planck-Institut für Informatik Computational Biology and Applied Algorithmics |