| Author/Editor [Non Institute] | Year | | Title | Type |
|---|
Adams, Altucci, Antonarakis, Ballesteros, Beck, Bird, Bock, Boehm, Campo, Caricasole, Dahl, Dermitzakis, Enver, Esteller, Estivill, Ferguson-Smith, Fitzgibbon, Flicek, Giehl, Graf, Grosveld, Guigó, Gut, Helin, Jarvius, Küppers, Lehrach, Lengauer, Lernmark, Leslie, Loeffler, Macintyre, Mai, Martens, Minucci, Ouwehand, Pelicci, Pendeville, Porse, Rakyan, Reik, Schrappe, Schübeler, Seifert, Siebert, Simmons, Soranzo, Spicuglia, Stratton, Stunnenberg, Tanay, Torrents, Valencia, Vellenga, Vingron, Walter, Willcocks
[-] | 2012 | | BLUEPRINT to decode the epigenetic signature written in blood
In: Nature Biotechnology [30], 224-226 | Journal Article |
Adams, McHardy, Lundegaard, Lengauer
(Ed: Frishman, Valencia)
[-] | 2009 | | Viral Bioinformatics
In: Modern Genome Annotation - The BioSapiens Network, 429-452 | Part of a Book |
Ahlenstiel, Roomp, Däumer, Nattermann, Vogel, Rockstroh, Beerenwinkel, Kaiser, Nischalke, Sauerbruch, Lengauer, Spengler
[-] | 2007 |  | Selective pressures of HLA genotypes and antiviral therapy on human immunodeficiency virus type 1 sequence mutation at a population level
In: Clinical and Vaccine Immunology [14], 1266-1273 | Journal Article |
Albrecht
[-] | 2010 | | Color blindness
In: Nature Methods [7], 775 | Journal Article |
Albrecht
[-] | 2006 | | Combining protein structure prediction with experiments and functional information
Universität des Saarlandes | Thesis - PhD thesis |
Albrecht
[-] | 2005 | | LRRK2 mutations and parkinsonism
In: The Lancet [365], 1230 | Journal Article |
Albrecht, Choubey, Lengauer
[-] | 2005 | | The HIN domain of IFI-200 proteins consists of two OB folds
In: Biochemical and Biophysical Research Communications [327], 679-687 | Journal Article |
Albrecht, Domingues, Schreiber, Lengauer
[-] | 2003 | | Identification of mammalian orthologs associates PYPAF5 with distinct functional roles
In: FEBS Letters [538], 173-177 | Journal Article |
Albrecht, Domingues, Schreiber, Lengauer
[-] | 2003 | | Structural localization of disease-associated sequence variations in the NACHT and LRR domains of PYPAF1 and NOD2
In: FEBS Letters [554], 520-528 | Journal Article |
Albrecht, Golatta, Wüllner, Lengauer
[-] | 2004 | | Structural and functional analysis of ataxin-2 and ataxin-3
In: European Journal of Biochemistry [271], 3155-3170 | Journal Article |
Albrecht, Hanisch, Zimmer, Lengauer
[-] | 2002 | | Improving fold recognition of protein threading by experimental distance constraints
In: In Silico Biology [2], 325-337 | Journal Article |
Albrecht, Hoffmann, Evert, Schmitt, Wüllner, Lengauer
[Hoffmann, Evert, Schmitt, Wüllner] | 2003 | | Structural modeling of ataxin-3 reveals distant homology to adaptins
In: Proteins: Structure, Function, and Genetics [50], 355-370 | Journal Article |
Albrecht, Huthmacher, Tosatto, Lengauer
[-] | 2005 | | Decomposing protein networks into domain-domain interactions
In: Bioinformatics [21], ii220-ii221 | Journal Article |
Albrecht, Kerren, Klein, Kohlbacher, Mutzel, Paul, Schreiber, Wybrow
(Ed: Eppstein, Gansner)
[-] | 2010 | | On open problems in biological network visualization
In: Graph Drawing : 17th International Symposium, GD 2009, 256-267 | Proceedings Article |
Albrecht, Lengauer
[-] | 2004 | | Novel Sm-like proteins with long C-terminal tails and associated methyltransferases
In: FEBS Letters [569], 18-26 | Journal Article |
Albrecht, Lengauer
[-] | 2004 | | Survey on the PABC recognition motif PAM2
In: Biochemical and Biophysical Research Communications [316], 129-138 | Journal Article |
Albrecht, Lengauer
[-] | 2003 | | Pyranose oxidase identified as a member of the GMC oxidoreductase family
In: Bioinformatics [19], 1216-1220 | Journal Article |
Albrecht, Lengauer, Schreiber
[-] | 2003 | | Disease-associated variants in PYPAF1 and NOD2 result in similar alterations of conserved sequence
In: Bioinformatics [19], 2171-2175 | Journal Article |
Albrecht, Takken
[-] | 2006 | | Update on the domain architectures of NLRs and R proteins
In: Biochemical and Biophysical Research Communications [339], 459-462 | Journal Article |
Albrecht, Tosatto, Lengauer, Valle
[Tosatto, Valle] | 2003 | | Simple consensus procedures are effective and sufficient in secondary structure prediction
In: Protein Engineering [16], 459-462 | Journal Article |
Alcaraz, Kucuk, Weile, Wipat, Baumbach
[-] | 2012 | | KeyPathwayMiner - Detecting case-specific biological pathways by using expression data
In: Internet Mathematics [7], 299-313 | Journal Article |
Alcaro, Alteri, Artese, Ceccherini-Silberstein, Costa, Ortuso, Forbici, Santoro, Parrotta, Flandre, Descamps, Calvez, Marcelin, Perno, Sing, Svicher
[-] | 2011 | | Docking Analysis and Resistance Evaluation of Clinically Relevant Mutations Associated with the HIV-1 Nonnucleoside Reverse Transcriptase Inhibitors Nevirapine, Efavirenz and Etravirine
In: ChemMedChem [6], 2203-2213 | Journal Article |
Alcaro, Artese, Ceccherini-Silberstein, Ortuso, Perno, Sing, Svicher
[-] | 2009 | | Molecular Dynamics and Free Energy Studies on the Wild-Type and Mutated HIV-1
Protease Complexed with Four Approved Drugs: Mechanism of Binding and
In: Journal of Chemical Information and Modeling [49], 1751-1761 | Journal Article |
Alexa
[-] | 2005 | | Integrating the GO graph structure in scoring the
significance of Gene Ontology terms
Universität des Saarlandes | Thesis - Masters thesis |
Alexa, Rahnenführer, Lengauer
[-] | 2006 | | Improved Scoring of Functional Groups from Gene Expression Data by Decorrelating GO Graph Structure
In: Bioinformatics [22], 1600-1607 | Journal Article |
Altmann
[-] | 2010 | | Bioinformatical approaches to ranking of anti-HIV combination therapies and planning of treatment schedules
Universität des Saarlandes | Thesis - PhD thesis |
Altmann, Beerenwinkel, Sing, Savenkov, Däumer, Kaiser, Rhee, Fessel, Shafer, Lengauer
[-] | 2007 | | Improved prediction of response to antiretroviral combination therapy using the genetic barrier to drug resistance
In: Antiviral Therapy [12], 169-178 | Journal Article |
Altmann, Däumer, Beerenwinkel, Peres, Schülter, Büch, Rhee, Sönnerborg, Fessel, Shafer, Zazzi, Kaiser, Lengauer
[-] | 2009 | | Predicting the Response to Combination Antiretroviral Therapy: Retrospective Validation of
geno2pheno-THEO on a Large Clinical Database
In: The Journal of Infectious Diseases [199], 999-1006 | Journal Article |
Altmann, Däumer, Sing, Beerenwinkel, Walter, Kaiser, Lengauer
[-] | 2007 | | Validation of geno2pheno and THEO on a large independent clinical dataset
In: Proceedings of the 5th European HIV Drug Resistance Workshop, - | Poster |
Altmann, Pironti, Perner, Büch, Lengauer
(Ed: Schapiro, Boucher)
[-] | 2010 | | Determination of clinically relevant cutoffs for HIV-1 phenotypic resistance estimates through a combined analysis of clinical trial and cohort data
In: Abstract Book. 8th European Drug Resistance Workshop, 46 | Poster |
Altmann, Rosen-Zvi, Prosperi, Aharoni, Neuvirth, Schülter, Büch, Peres, Incardona, Sönnerborg, Kaiser, Zazzi, Lengauer
[-] | 2008 | | The EuResist approach for predicting response to anti HIV-1 therapy
In: Reviews in Antiviral Therapy, 107 | Poster |
Altmann, Rosen-Zvi, Prosperi, Aharoni, Neuvirth, Sönnerborg, Schülter, Büch, Struck, Peres, Incardona, Kaiser, Zazzi, Lengauer
[-] | 2008 | | Comparison of Classifier Fusion Methods for Predicting Response to Anti HIV-1 Therapy
In: PLoS ONE [3], e3470 | Journal Article |
Altmann, Sing, Vermeiren, Winters, Van Craenenbroeck, Van der Borght, Rhee, Shafer, Schülter, Kaiser, Peres, Sönnerborg, Fessel, Incardona, Zazzi, Bacheler, Van Vlijmen, Lengauer
[-] | 2009 | | Advantages of Predicted Phenotypes and Statistical Learning Models in Inferring Virological Response to Antiretroviral Therapy from HIV Genotype
In: Antiviral Therapy [14], 273-283 | Journal Article |
Altmann, Sing, Vermeiren, Winters, Van Craenenbroeck, Van der Borght, Rhee, Shafer, Schülter, Kaiser, Peres, Sonnerborg, Fessel, Incardona, Zazzi, Bacheler, Van Vlijmen, Lengauer
[-] | 2007 | | Inferring virological response from genotype: with or without predicted phenotypes?
In: Proceedings of the 16th International HIV Drug Resistance Workshop, S169 | Poster |
Altmann, Tolosi, Sander, Lengauer
[-] | 2010 | | Permutation importance: an unbiased feature importance measure
In: Bioinformatics [26], 1340-1347 | Journal Article |
Antes
[-] | 2009 | | Computational Methods for the Investigation of Protein-Ligand Interactions
Universität des Saarlandes | Thesis - Habilitation thesis |
Antes, Chandler, Oster
[Oster] | 2002 | | A classical dynamics study of the unbinding of ATP from the F0F1-ATPase
In: Poster book of the European Conference on Computational Biology, Saarbrücken, Germany 2002, - | Poster |
Antes, Klein
[-] | 2001 | | The formation of a β-Peptide/DPC-micelle complex studied by MD simulations | Miscellaneous |
Antes, Lengauer
[-] | 2006 | | Refinement of homology modeled protein structures for molecular docking
In: Proceedings of the 367. WE-Heraeus Seminar on Biomolecular Simulations, 1 | Poster |
Antes, Lengauer, Mueller, Ulmschneider, Hartmann
[-] | 2003 | | Docking into the homology models of CYP11B1 and CYP11B2
In: Proceedings of the German Conference on Bioinformatics 2003, 13 | Poster |
Antes, Merkwirth, Lengauer
[-] | 2005 | | POEM: Parameter Optimization using Ensemble Methods: Application to target specific scoring functions
In: Journal of Chemical Information and Modeling [45], 1291-1302 | Journal Article |
Antes, Siu, Lengauer
[-] | 2006 | | DynaPred: A structure and sequence based method for the prediction of MHC class I binding peptide sequence and conformations
In: Bioinformatics [22], 16-24 | Journal Article |
Antes, Thiel, Gunsteren van
[-] | 2002 | | Molecular dynamics simulations of photoactive yellow protein (PYP) in three states of its photocycle: a comparison with X-ray and NMR data and analysis of the effects of Glu46 deprotonation and mutation
In: European Biophysics Jounal [31], 504-520 | Journal Article |
Antes, Wang, Chandler, Oster
[-] | 2003 | | The unbinding of ATP from F1-ATPase
In: Biophysical Journal [85], 695-706 | Journal Article |
Apostolakis, Hofmann, Lengauer
[Apostolakis, Hofmann] | 2001 | | Derivation of a scoring function for crystal structure prediction
In: Acta Crystallographica [A57], 442-450 | Journal Article |
Aranda, Blankenburg, Kerrien, Brinkman, Ceol, Chautard, Dana, De Las Rivas, Dumousseau, Galeota, Gaulton, Goll, Hancock, Isserlin, Jimenez, Kerssemakers, Khadake, Lynn, Michaut, O'Kelly, Ono, Orchard, Prieto, Razick, Rigina, Salwinski, Simonovic, Velankar, Winter, Wu, Bader, Cesareni, Donaldson, Eisenberg, Kleywegt, Overington, Ricard-Blum, Tyers, Albrecht, Hermjakob
[-] | 2011 | | PSICQUIC and PSISCORE: accessing and scoring molecular interactions
In: Nature Methods [8], 528-529 | Journal Article |
Assenov
[-] | 2006 | | Topological Analysis of Biological
Networks
Universität des Saarlandes | Thesis - Masters thesis |
Assenov, Ramírez, Schelhorn, Lengauer, Albrecht
[-] | 2008 | | Computing topological parameters of biological networks
In: Bioinformatics [24], 282-284 | Journal Article |
Bader
[-] | 2012 | | Clustering epigenetic data using a Dirichlet process prior
Universität des Saarlandes | Thesis - Masters thesis |
Balduin, Beerenwinkel, Sierra, Däumer, Rockstroh, Oette, Fätkenheuer, Kupfer, Hoffmann, Selbig, Pfister, Kaiser
[Balduin, Sierra, Däumer, Rockstroh, Oette, Fätkenheuer, Kupfer, Hoffmann, Selbig, Pfister, Kaiser] | 2005 | | Evolution of HIV resistance during treatment interruption in experienced patients and after restarting a new therapy
In: J Clin Virol [34], 277-287 | Journal Article |
Bastys
[-] | 2012 | | MAP Kinase Docking Motifs in HIV Proteins
Universität des Saarlandes | Thesis - Masters thesis |
Baumbach
[-] | 2012 | | Integrative computational biology
In: Integrative Biology [4], 713-714 | Journal Article |
Baumbach
[-] | 2010 | | On the power and limits of evolutionary conservation - unraveling bacterial gene regulatory networks
In: Nucleic Acids Research [38], 7877-7884 | Journal Article |
Bayjanov
[-] | 2004 | | Scoring pathway activity from gene
expression data
Universität des Saarlandes | Thesis - Masters thesis |
Beerenwinkel
(Ed: Oette, Kaiser, Häussinger)
[-] | 2004 | | Das Arevir-Projekt : neue Wege zur Optimierung von Anti-HIV-Therapien
In: Resistenz in der HIV-Therapie : Diagnostik und Management, 94-98 | Part of a Book |
Beerenwinkel
(Ed: Oette, Kaiser, Häussinger)
[-] | 2004 | | Methoden zur Interpretation genotypischer Resistenztests
In: Resistenz in der HIV-Therapie : Diagnostik und Management, 66-68 | Part of a Book |
Beerenwinkel
[-] | 2004 | | Computational Analysis of HIV Drug resistance Data | Book |
Beerenwinkel
[-] | 2003 | | Computational Analysis of HIV Drug Resistance Data
Universität des Saarlandes | Thesis - PhD thesis |
Beerenwinkel, Däumer, Hoffmann, Kaiser, Korn, Lengauer, Schmidt, Walter, Selbig
[-] | 2001 | | Neue Wege zur Optimierung von Anti-HIV Therapien
In: BIOforum [24], 912-914 | Journal Article |
Beerenwinkel, Däumer, Hoffmann, Kaiser, Selbig, Lengauer
[-] | 2003 | | Bioinformatikmethoden für die Optimierung antiviraler Kombinationstherapien
In: MPG Jahrbuch, 481-486 | Part of a Book |
Beerenwinkel, Däumer, Kaiser, Walter, Korn, Hoffmann, Selbig, Lengauer
[Däumer, Kaiser, Walter, Korn, Hoffmann, Selbig] | 2003 | | Estimating effective drug combinations against drug-resistant mutants from genotypes
In: Proceedings of the 1st European HIV Drug Resistamce Workshop, 18-18 | Proceedings Article |
Beerenwinkel, Däumer, Oette, Korn, Hoffmann, Kaiser, Lengauer, Selbig, Walter
[-] | 2003 | | Geno2pheno: estimating phenotypic drug resistance from HIV-1 genotypes
In: Nucleic Acids Research [31], 3850-3855 | Journal Article |
Beerenwinkel, Däumer, Sing, Rahnenführer, Lengauer, Selbig, Hoffmann, Kaiser
[-] | 2005 | | Estimating HIV evolutionary pathways and the genetic barrier to drug resistance
In: The Journal of Infectious Diseases [191], 1953-1960 | Journal Article |
Beerenwinkel, Kaiser, Rahnenführer, Däumer, Hoffmann, Selbig, Lengauer
(Ed: Boucher, Mellors, Larder, Richman)
[-] | 2003 | | Tree models for the evolution of drug resistance
In: XII International HIV Drug resistance Workshop, S107-S107 | Proceedings Article |
Beerenwinkel, Lengauer, Däumer, Kaiser, Walter, Korn, Hoffmann, Selbig
[-] | 2003 | | Methods for optimizing antiviral combination therapies
In: Bioinformatics [19], i16-i25 | Journal Article |
Beerenwinkel, Lengauer, Däumer, Sierra, Schmidt, Walter, Korn, Oette, Fätkenheuer, Rockstroh, Hoffmann, Kaiser, Selbig
[-] | 2002 | | Geno2pheno is predictive of short-term virological response
In: Proceedings from the 5th International Workshop on HIV Drug Resistance & Treatment Strategies, 74-74 | Proceedings Article |
Beerenwinkel, Lengauer, Schmidt, Walter, Kaiser, Hoffmann, Korn, Selbig
[-] | 2002 | | Quantitative phenotype prediction by support vector machines
In: Proceedings from the 5th International Workshop on HIV Drug resistance & Treatment Strategies, 97 | Proceedings Article |
Beerenwinkel, Rahnenführer, Däumer, Hoffmann, Kaiser, Selbig, Lengauer
(Ed: Gusfield, Bourne, Istrail, Pevzner, Waterman)
[-] | 2004 | | Learning multiple evolutionary pathways from cross-sectional data
In: RECOMB 2004 : proceedings of the Eighth Annual International Conference on Research in Computational Molecular Biology, 36-44 | Proceedings Article |
Beerenwinkel, Rahnenführer, Däumer, Hoffmann, Kaiser, Selbig, Lengauer
[-] | 2005 | | Learning multiple evolutionary pathways from cross-sectional data
In: Journal of Computational Biology [12], 584-598 | Journal Article |
Beerenwinkel, Rahnenführer, Kaiser, Hoffmann, Selbig, Lengauer
[-] | 2005 | | Mtreemix: a software package for learning and using mixture models of mutagenetic trees
In: Bioinformatics [21], 2106-2107 | Journal Article |
Beerenwinkel, Schmidt, Walter, Kaiser, Lengauer, Hoffmann, Korn, Selbig
[-] | 2002 | | Diversity and complexity of HIV-1drug resistance: A bioinformatics approach to predicting phenotype from genotype
In: Proceedings of the National Academy of Sciences [99], 8271-8276 | Journal Article |
Beerenwinkel, Schmidt, Walter, Kaiser, Lengauer, Hoffmann, Korn, Selbig
[Schmidt, Walter, Kaiser, Hoffmann, Korn, Selbig] | 2001 | | Geno2pheno: A system for the interpretation of genotypic HIV Drug resistance tests
In: IEEE Intelligent Systems [16], 35-41 | Journal Article |
Beerenwinkel, Sing, Däumer, Kaiser, Lengauer
(Ed: Boucher, Mellors, Larder, Richman)
[-] | 2004 | | Computing the genetic barrier
In: XII International HIV Drug resistance Workshop, S125-S125 | Proceedings Article |
Beerenwinkel, Sing, Lengauer, Rahnenführer, Roomp, Savenkov, Fischer, Hoffmann, Selbig, Korn, Walter, Berg, Braun, Fätkenheuer, Oette, Rockstroh, Kupfer, Kaiser, Däumer
[-] | 2005 | | Computational methods for the design of effective therapies against drug resistant HIV strains
In: Bioinformatics [21], 3943-3950 | Journal Article |
Beggel, Neumann-Fraune, Doering, Lawyer, Kaiser, Verheyen, Lengauer
[-] | 2012 | | Genotyping hepatitis B virus dual infections using population-based sequence data
In: Journal of General Virology [9], 1899-1907 | Journal Article |
Bhattacharyya, Feuerbach, Bhadra, Bandyopadhyay
[-] | 2012 | | MicroRNA Transcription Start Site Prediction with Multi-objective Feature Selection
In: Statistical Applications in Genetics and Molecular Biology [11], 6.1-6.25 | Journal Article |
Bickel, Bogojeska, Lengauer, Sheffer
(Ed: McCallum, Roweis)
[-] | 2008 | | Multi-Task Learning for HIV Therapy Screening
In: Proceedings, Twenty-Fifth International Conference on Machine Learning, 56-63 | Proceedings Article |
Binsl
[-] | 2006 | | Feature Prints: A new method for calculating molecular similarities
Universität des Saarlandes | Thesis - Masters thesis |
Binsl
[-] | 2004 | | Implementation of a Generic Fragment
Based Method for Automated
Calculation of the Octanol-Water
Partition Coefficient
Universität des Saarlandes | Thesis - Bachelor thesis |
Blankenburg
[-] | 2007 | | A Distributed Annotation System for Molecular Interactions
Ruprecht Karl Universität Heidelberg; Universität Heilbronn | Thesis - other |
Blankenburg, Finn, Prlić, Jenkinson, Ramírez, Emig, Schelhorn, Büch, Lengauer, Albrecht
[-] | 2009 | | DASMI: exchanging, annotating and assessing molecular interaction data
In: Bioinformatics [25], 1321-1328 | Journal Article |
Blankenburg, Ramírez, Büch, Albrecht
[-] | 2009 | | DASMIweb: online integration, analysis and assessment of distributed protein interaction data
In: Nucleic Acids Research [37], W122-W128 | Electronic Journal Article |
Bleif, Hannemann, Lisurek, von Kries, Zapp, Dietzen, Antes, Bernhardt
[-] | 2011 | | Identification of CYP106A2 as a Regioselective Allylic Bacterial Diterpene Hydroxylase
In: ChemBioChem [12], 576-582 | Journal Article |
Bock
[-] | 2012 | | Analysing and interpreting DNA methylation data
In: Nature Reviews Genetics [13], 705-719 | Journal Article |
Bock
[-] | 2009 | | Epigenetic biomarker development
In: Epigenomics [1], 99-110 | Journal Article |
Bock
[-] | 2008 | | Computational Epigenetics - Bioinformatic methods for epigenome prediction, DNA methylation mapping and cancer epigenetics
Universität des Saarlandes | Thesis - PhD thesis |
Bock
[-] | 2008 | | IVF: stars may have to consider the risk of stolen parenthood
In: Nature [454], 938 | Journal Article |
Bock
[-] | 2006 | | Bioinformatik: Neue Strategien gegen Krebs
In: Deutsches Ärzteblatt PRAXiS [103], 10-11 | Journal Article |
Bock, Halachev, Büch, Lengauer
[-] | 2009 | | EpiGRAPH: user-friendly software for statistical analysis and prediction of (epi)genomic data
In: Genome Biology [10], R14.1-R14.14 | Journal Article |
Bock, Halachev, Lengauer
(Ed: Haasis, Heinzl, Klumpp)
[-] | 2006 | | Bioinformatisches Data Mining erschließt neue Strategien gegen Krebs
In: Aktuelle Trends in der Softwareforschung, 91-99 | Part of a Book |
Bock, Hesser
[-] | 2006 | | Analysis and Prediction of Helix Shift Errors in Homology Modeling
In: In Silico Biology [6], 131-145 | Journal Article |
Bock, Kiskinis, Verstappen, Gu, Boulting, Smith, Ziller, Croft, Amoroso, Oakley, Gnirke, Eggan, Meissner
[-] | 2011 | | Reference Maps of Human ES and iPS Cell Variation Enable High-Throughput Characterization of Pluripotent Cell Lines
In: Cell [144], 439-452 | Journal Article |
Bock, Lengauer
[-] | 2012 | | Epigenom-Karten erstellen und nutzen
In: BIOspektrum [18], 138-141 | Journal Article |
Bock, Lengauer
[-] | 2012 | | Managing drug resistance in cancer: lessons from HIV therapy
In: Nature Reviews Cancer [12], 494-501 | Journal Article |
Bock, Lengauer
[-] | 2008 | | Computational epigenetics
In: Bioinformatics [24], 1-10 | Journal Article |
Bock, Lengauer
[-] | 2007 | | Computational Epigenetics: Bioinformatik für neue Wege in der Krebsforschung
In: Jahrbuch 2007, 271-277 | Part of a Book |
Bock, Lengauer, Reither, Mikeska, Paulsen, Walter
[-] | 2005 | | BiQ Analyzer: visualization and quality control for DNA methylation data from bisulfite sequencing
In: Bioinformatics [21], 4067-4068 | Journal Article |
Bock, Paulsen, Tierling, Mikeska, Lengauer, Walter
[-] | 2006 | | CpG Island Methylation in Human Lymphocytes Is Highly Correlated with DNA Sequence, Repeats, and Predicted DNA Structure
In: PLoS Genetics [2], 0243-0252 | Electronic Journal Article |
Bock, Tomazou, Brinkman, Müller, Simmer, Gu, Jäger, Gnirke, Stunnenberg, Meissner
[-] | 2010 | | Quantitative comparison of genome-wide DNA methylation mapping technologies
In: Nature Biotechnology [28], 1106-1114 | Journal Article |
Bock, Von Kuster, Halachev, Taylor, Nekrutenko, Lengauer
(Ed: Barnes, Breen)
[-] | 2010 | | Web-based analysis of (epi-) genome data using EpiGRAPH and Galaxy.
In: Genetic Variation : Methods and Protocols, 275-296
In: Methods of Molecular Biology [628], 275-296 | Part of a Book |
Bock, Walter, Paulsen, Lengauer
[-] | 2008 | | Inter-individual variation of DNA methylation and its implications for large-scale epigenome mapping
In: Nucleic Acids Research [36], e55 | Journal Article |
Bock, Walter, Paulsen, Lengauer
[-] | 2007 | | CpG Island Mapping by Epigenome Prediction
In: PLoS Computational Biology [3], 1055-1070 | Journal Article |
Boeddrich, Gaumer, Haacke, Tzvetkov, Albrecht, Evert, Müller, Lurz, Breuer, Schugardt, Plaßmann, Xu, Warrick, Suopanki, Wüllner, Frank, Hartl, Bonini, Wanker
[-] | 2006 | | An arginine/lysine-rich motif is crucial for VCP/p97-mediated modulation of ataxin-3 fibrillogenesis
In: EMBO Journal [25], 1547-1558 | Journal Article |
Bogojeska
(Ed: Shawe-Taylor, Zemel, Bartlett, Pereira, Weinberger)
[-] | 2011 | | History distribution matching method for predicting effectiveness of HIV combination therapies
In: Neural Information Processing Systems (NIPS 2011), 424-432 | Electronic Proceedings Article |
Bogojeska
[-] | 2011 | | Statistical Learning Methods for Bias-aware HIV Therapy Screening
Universität des Saarlandes | Thesis - PhD thesis |
Bogojeska
[-] | 2007 | | Stability analysis of oncogenetic trees mixture models
Universität des Saarlandes | Thesis - Masters thesis |
Bogojeska, Alexa, Altmann, Lengauer, Rahnenführer
[-] | 2008 | | Rtreemix: an R package for estimating evolutionary pathways and genetic progression scores
In: Bioinformatics [24], 2391-2392 | Journal Article |
Bogojeska, Bickel, Altmann, Lengauer
[-] | 2010 | | Dealing with sparse data in predicting outcomes of HIV combination therapies
In: Bioinformatics [26], 2085-2092 | Journal Article |
Bogojeska, Lengauer
[-] | 2012 | | Hierarchical Bayes Model for Predicting Effectiveness of HIV Combination Therapies
In: Statistical Applications in Genetics and Molecular Biology [11], 11.1-11.19 | Journal Article |
Bogojeska, Lengauer, Rahnenführer
[-] | 2008 | | Stability analysis of mixtures of mutagenetic trees
In: BMC Bioinformatics [9], 165-181 | Journal Article |
Bogojeska, Stöckel, Zazzi, Kaiser, Incardona, Rosen-Zvi, Lengauer
(Ed: Lawrence, Girolami)
[-] | 2012 | | History-alignment models for bias-aware prediction of virological response to HIV combination therapy
In: Proceedings of the Fifteenth International Conference on Artificial Intelligence and Statistics (AISTATS 2012), 118-126 | Proceedings Article |
Bojunga, Welsch, Antes, Albrecht, Lengauer, Zeuzem
[-] | 2005 | | Structural and functional analysis of a novel mutation of CYP21B in a heterozygote carrier of 21-hydroxylase deficiency
In: Human Genetics [117], 558-564 | Journal Article |
Bozek
[-] | 2011 | | Analysis of HIV-host interaction on different scales.
Universität des Saarlandes | Thesis - PhD thesis |
Bozek, Eckhardt, Sierra, Kaiser, Kräusslich, Müller, Lengauer
[-] | 2012 | | An expanded model of HIV cell entry phenotype based on multi-parameter single-cell data
In: Retrovirology [9], 60.1-60.15 | Journal Article |
Bozek, Lengauer
[-] | 2010 | | Positive selection of HIV host factors and the evolution of lentivirus genes
In: BMC Evolutionary Biology [10], 186,1-186,15 | Electronic Journal Article |
Bozek, Lengauer, Sierra, Kaiser, Domingues
[-] | 2013 | | Analysis of physicochemical and structural properties determining HIV-1 coreceptor usage
In: PLoS Computational Biology [x], x | Journal Article |
Bozek, Relógio, Kielbasa, Heine, Dame, Kramer, Herzel
[-] | 2009 | | Regulation of clock-controlled genes in mammals.
In: PLoS One [4], e4882:1-e4882:12 | Electronic Journal Article |
Bozek, Rosahl, Gaub, Lorenzen, Herzel
[-] | 2010 | | Circadian transcription in liver
In: Biosystems [102], 61-69 | Journal Article |
Bozek, Thielen, Sierra, Kaiser, Lengauer
[-] | 2009 | | V3 loop sequence space analysis suggests different evolutionary patterns of CCR5- and CXCR4-tropic HIV.
In: PLoS One [4], e7387:1-e.7387:14 | Electronic Journal Article |
Bozinov, Rahnenführer, Burson, Spiegelstein
(Ed: Arabnia, Mun)
[-] | 2002 | | Automated Grid Alignment for High-Throughput Analysis of Microarray Images (CIIST-02)
In: Proceedings of the 2002 International Conference on Imaging Science, Systems, and Technology, 161-167 | Proceedings Article |
Brooks-Wilson, Marcil, Clee, Zhang, Roomp, van Dam, Yu, Brewer, Collins, Molhuizen, Loubser, Ouelette, Fichter, Ashbourne-Excoffon, Sensen, Scherer, Mott, Denis, Martindale, Frohlich, Morgan, Koop, Pimstone, Kastelein, Hayden
[Brooks-Wilson, Marcil, Clee, Zhang, van Dam, Yu, Brewer, Collins, Molhuizen, Loubser, Ouelette, Fichter, Ashbourne-Excoffon, Sensen, Scherer, Mott, Denis, Martindale, Frohlich, Morgan, Koop, Pimstone, Kastelein, Hayden] | 1999 | | Mutations in ABC1 in Tangier disease and familial high-density lipoprotein
In: Nature Genetics [22], 336-45 | Journal Article |
Brunner, Hurni, Streckeisen, Mayr, Albrecht, Yahiaoui, Keller
[-] | 2010 | | Intragenic allele pyramiding combines different specificities of wheat Pm3 resistance alleles
In: The Plant Journal [64], 433-445 | Journal Article |
Calvanese, Fernandez, Urdinguio, Suarez-Álvarez, Mangas, Pérez-García, Bueno, Montes, Ramos-Mejía, Martínez-Camblor, Ferrero, Assenov, Bock, Menendez, Carrera, Lopez-Larrea, Fraga
[-] | 2012 | | A promoter DNA demethylation landscape of human hematopoietic differentiation
In: Nucleic Acids Research [40], 116-131 | Journal Article |
Castellano, Lobanov, Chapple, Novoselov, Albrecht, Hua, Lescure, Lengauer, Krol, Gladyshev, Guigó
[-] | 2005 | | Diversity and functional plasticity of eukaryotic selenoproteins: Identification and characterization of the SelJ family
In: Proceedings of the National Academy of Sciences [102], 16188-16193 | Journal Article |
Ceccherini-Silberstein, Svicher, Sing, Artese, Santoro, Forbici, Bertoli, Alcaro, Palamara, Monforte, Balzarini, Antinori, Lengauer, Perno
[-] | 2007 | | Characterization and structural analysis of novel mutations in human immunodeficiency virus type 1 reverse transcriptase involved in the regulation of restistance to nonnucleoside inhibitors
In: Journal of Virology [81], 11507-11519 | Journal Article |
Cerdeira, Carneir, Ramos, de Almeida, D'Afonseca, Schneider, Baumbach, Tauch, McCulloch, Azevedo, Silva
[-] | 2011 | | Rapid hybrid de novo assembly of a microbial genome using only short reads: Corynebacterium pseudotuberculosis I19 as a case study
In: Journal of Microbiological Methods [86], 218-223 | Journal Article |
Claussen, Buning, Rarey, Lengauer
[Claußen, Buning, Rarey] | 2001 | | FlexE: Efficient Molecular Docking Considering Protein Structure Variations
In: Journal of Molecular Biology [308], 377-395 | Journal Article |
Clee, Kastelein, van Dam, Marcil, Roomp, Zwarts, Collins, Roelants, Tamasawa, Stulc, Suda, Ceska, Boucher, Rondeau, DeSouich, Brooks-Wilson, Molhuizen, Frohlich, Genest, Hayden
[Clee, Kastelein, van Dam, Marcil, Zwarts, Collins, Roelants, Tamasawa, Stulc, Suda, Ceska, Boucher, Rondeau, DeSouich, Brooks-Wilson, Molhuizen, Frohlich, Genest, Hayden] | 2000 | | Age and residual cholesterol efflux affect HDL cholesterol levels and coronary artery disease in ABCA1 heterozygotes
In: Journal of Clinical Investigation [106], 1263-70 | Journal Article |
Clee, Zwinderman, Engert, Zwarts, Molhuizen, Roomp, Jukema, van Wijland, van Dam, Hudson, Brooks-Wilson, Genest, Kastelein, Hayden
[Clee, Zwinderman, Engert, Zwarts, Molhuizen, Jukema, van Wijland, van Dam, Hudson, Brooks-Wilson, Genest, Kastelein, Hayden] | 2001 | | Common genetic variation in ABCA1 is associated with altered lipoprotein levels and a modified risk for coronary artery disease
In: Circulation [103], 1198-205 | Journal Article |
Codoner, Pou, Thielen, García, Delgado, Dalmau, Álvarez-Tejado, Ruiz, Clotet, Paredes
[-] | 2011 | | Added value of deep sequencing relative to population sequencing in heavily pre-treated HIV-1-infected subjects
In: PLoS One [6], e19461,1-e19461,5 | Electronic Journal Article |
Codoñer, Pou, Thielen, García, Delgado, Dalmau, Santos, Buzón, Martínez-Picado, Clotet, Ruiz, Paredes
[-] | 2010 | | Dynamic escape of pre-existing raltegravir-resistant HIV-1 from raltegravir selection pressure
In: Antiviral Research [88], 281-286 | Journal Article |
Costello, Mah, Häsler, Rosenstiel, Waetzig, Hahn, Lu, Gurbuz, Nikolaus, Albrecht, Hampe, Lucius, Klöppel, Eickhoff, Lehrach, Lengauer, Schreiber
[-] | 2005 | | Dissection of the inflammatory bowel disease transcriptome using genome-wide cDNA microarrays identifies novel candidate disease genes
In: PLoS Medicine [2], 771-787 | Journal Article |
Crass, Antes, Basekow, Bork, Buning, Christensen, Claußen, Ebeling, Ernst, Gailus-Durner, Glatting, Gohla, Gößling, Grote, Heidtke, Herrmann, O Keefe, Kießlich, Kolibal, Korbel, Lengauer, Liebich, van der Linden, Luz, Meissner, von Mering, Mevissen, Mewes, Michael, Mokrejs, Müller, Pospisil, Rarey, Reich, Schneider, Schomburg, Schulze-Kremer, Schwarzer, Sommer, Springstubbe, Suhai, Thoppae, Vingron, Warfsmann, Werner, Wetzler, Wingender, Zimmer
[-] | 2004 | | The Helmholtz Network for Bioinformatics: an integrative web portal for bioinformatics resources
In: Bioinformatics [20], 268-270 | Journal Article |
Däumer, Awerkiew, Sierra Aragon, Kartashev, Poplavskaja, Klein, Sichtig, Thielen, Lengauer, Roomp, Pfister, Kaiser
[-] | 2010 | | Short Communication: Selection of Thymidine Analogue Resitance Mutational Patterns in Children from a Common HIV Type 1 Subtype G Source
In: AIDS Research and Human Retroviruses [26], 275-278 | Journal Article |
Däumer, Kaiser, Klein, Lengauer, Thiele, Thielen
[-] | 2011 | | Genotypic tropism testing by massively parallel sequencing: qualitative and quantitative analysis
In: BMC Medical Informatics and Decision Making [11], 30,1-30,8 | Electronic Journal Article |
Däumer, Kaiser, Klein, Lengauer, Thiele, Thielen
[-] | 2008 | | Inferring viral tropism from genotype with massively parallel sequencing; qualitative and quantitative analysis
In: Antiviral Therapy, A101 | Poster |
Das, James, Rahnenführer, Thoresona, Bhattacharyaa, Zhao, Ahmad
[-] | 2005 | | Retinal properties and potential of the adult mammalian ciliary epithelium stem cells
In: Vision Research [45], 1653-1666 | Journal Article |
Diehl
[-] | 2009 | | Analysis and reconstruction of protein complex topology
Universität des Saarlandes | Thesis - Masters thesis |
Dietzen
[-] | 2007 | | An additive tree-based approach to the prediction of the strength of acidity for drug-like molecules
Universität des Saarlandes | Thesis - Masters thesis |
Dietzen, Zotenko, Hildebrandt, Lengauer
[-] | 2012 | | On the Applicability of Elastic Network Normal Modes in Small-Molecule Docking
In: Journal of Chemical Information and Modeling [52], 844-856 | Journal Article |
Djoumbou
[-] | 2008 | | Molecular Dynamics based prediction of HIV-1 drug resistance
Universität des Saarlandes | Thesis - Masters thesis |
Djoumbou
[-] | 2005 | | Docking studies to investigate the effect of correlated mutations in the HIV-Protease on the drug resistance of HIV
Universität des Saarlandes | Thesis - Bachelor thesis |
Döring
[-] | 2011 | | Web Implementation of the HBV Dual Infection Model
Universität des Saarlandes | Thesis - Bachelor thesis |
Dörr
[-] | 2010 | | Using copy number variation fpr predicting susceptibility to glioblastoma
Universität des Saarlandes | Thesis - Bachelor thesis |
Domingues, Lengauer
(Ed: Lengauer)
[-] | 2007 | | Inferring Protein Function from Protein Structure
In: Bioinformatics - From Genomes to Therapies 3. The Holy Grail: Molecular Function, 1211-1252 | Part of a Book |
Domingues, Lengauer
[-] | 2003 | | Protein Function from Sequence and Structure Data
In: Applied Bioinformatics [2], 3-12 | Journal Article |
Domingues, Lengauer, Sommer
(Ed: Cooper)
[-] | 2004 | | Protein Structure Prediction and Databases
In: Nature Encyclopedia of the Human Genome, 864-867 | Part of a Book |
Domingues, Rahnenführer, Lengauer
[-] | 2007 | | Conformational analysis of alternative protein structures
In: Bioinformatics [23], 3131-3138 | Journal Article |
Domingues, Rahnenführer, Lengauer
[-] | 2004 | | Automated clustering of ensembles of alternative models in protein structure databases
In: Protein Engineering Design and Selection [17], 537-543 | Journal Article |
Doncheva
[-] | 2009 | | Analysis and visualization of residue interaction networks
Universität des Saarlandes | Thesis - Masters thesis |
Doncheva, Assenov, Domingues, Albrecht
[-] | 2012 | | Topological analysis and interactive visualization of biological networks and protein structures
In: Nature Protocols [7], 670-685 | Journal Article |
Doncheva, Kacprowski, Albrecht
[-] | 2012 | | Recent approaches to the prioritization of candidate disease genes
In: Wiley Interdisciplinary Reviews: Systems Biology and Medicine [4], 429-442 | Journal Article |
Doncheva, Klein, Domingues, Albrecht
[-] | 2011 | | Analyzing and visualizing residue networks of protein structures
In: Trends in Biochemical Sciences [36], 179-182 | Journal Article |
Ebert
[-] | 2009 | | Computational Analysis of genomic HPV data
Universität des Saarlandes | Thesis - Bachelor thesis |
Ebrahimi, Lakizadeh, Agha-Golzadeh, Ebrahimi
[-] | 2011 | | Prediction of Thermostability from Amino Acid Attributes by Combination of Clustering with Attribute Weighting: A New Vista in Engineering Enzymes
In: PLoS One [6], e23146,1-e23146,11 | Electronic Journal Article |
Eldarov
[-] | 2012 | | Modeling influenza evolution in response to immune system pressure
Universität des Saarlandes | Thesis - Masters thesis |
Ellinghaus, Ellinghaus, Stuart, Nair, Debrus, Raelson, Belouchi, Fournier, Reinhard, Ding, Li, Tejasvi, Gudjonsson, Stoll, Voorhees, Lambert, Weidinger, Eberlein, Kunz, Rahman, Gladman, Gieger, Wichmann, Karlsen, Mayr, Albrecht, Kabelitz, Mrowietz, Abecasis, Elder, Schreiber, Weichenthal, Franke
[-] | 2010 | | Genome-wide association study identifies a psoriasis susceptibility locus at TRAF3IP2
In: Nature Genetics [42], 991-995 | Journal Article |
Emig
[-] | 2011 | | Novel analysis approaches to context-dependent molecular networks
Universität des Saarlandes | Thesis - PhD thesis |
Emig
[-] | 2007 | | The Impact of Alternative Splicing on Protein Interaction Networks
Eberhard Karls Universität Tübingen | Thesis - other |
Emig, Albrecht
[-] | 2011 | | Tissue-specific proteins and functional implications
In: Journal of Proteome Research [10], 1893-1903 | Journal Article |
Emig, Blankenburg, Ramírez, Albrecht
(Ed: Larson)
[-] | 2012 | | Functional characterization of human genes from exon expression and RNA interference results
In: Bioinformatics and Drug Discovery, 33-53 | Part of a Book |
Emig, Cline, Klein, Kunert, Mutzel, Lengauer, Albrecht
[-] | 2008 | | Integrative visual analysis of the effects of alternative splicing on protein domain interaction networks
In: Journal of Integrative Bioinformatics [5], 101-115 | Journal Article |
Emig, Cline, Lengauer, Albrecht
[-] | 2008 | | Integrating expression data with domain interaction networks
In: Bioinformatics [24], 2546-2548 | Journal Article |
Emig, Kacprowski, Albrecht
(Ed: Nykter, Ruusuvuori, Carlberg, Yli-Harja)
[-] | 2010 | | Measuring and analyzing tissue specificity of human genes and protein complexes
In: Seventh International Workshop on Computational Systems
Biology, WCSB 2010, 27-30 | Proceedings Article |
Emig, Kacprowski, Albrecht
[-] | 2011 | | Measuring and analyzing tissue specificity of human genes and protein complexes
In: EURASIP Journal on Bioinformatics and Systems Biology [2011], 5,1-5,6 | Journal Article |
Emig, Klein, Kunert, Mutzel, Albrecht
[-] | 2008 | | Visualizing domain interaction networks and the impact of alternative splicing events
In: Proceedings of the 5th International Conference on BioMedical Visualization (MediVis): Information Visualization in Medical and Biomedical Informatics, 36-43 | Proceedings Article |
Emig, Salomonis, Baumbach, Lengauer, Conklin, Albrecht
[-] | 2010 | | AltAnalyze and DomainGraph: analyzing and visualizing exon expression data
In: Nucleic Acids Research [38], W755-W762 | Journal Article |
Emig, Sander, Mayr, Albrecht
[-] | 2011 | | Structure collisions between interacting proteins
In: PLoS ONE [6], e19581,1-e19581,7 | Electronic Journal Article |
Eyrisch
[-] | 2004 | | Fun2Struc-A Tool For Predicting Protein Structure
Classes from Function Predictions
Universität des Saarlandes | Thesis - Bachelor thesis |
Faria, Schlicker, Pesquita, Bastos, Ferreira, Albrecht, Falcão
[-] | 2012 | | Mining GO annotations for improving annotation consistency
In: PLoS ONE [7], e40519,1-e40519,7 | Electronic Journal Article |
Fernandez, Assenov, Martin-Subero, Balint, Siebert, Taniguchi, Yamamoto, Hidalgo, Tan, Galm, Ferrer, Sanchez-Cespedes, Villanueva, Carmona, Sanchez-Mut, Berdasco, Moreno, Capella, Monk, Ballestar, Ropero, Martinez, Sanchez-Carbayo, Prosper, Agirre, Fraga, Gran˜a, Perez-Jurado, Mora, Puig, Prat, Badimon, Puca, Meltzer, Lengauer, Bridgewater, Bock, Esteller
[-] | 2012 | | A DNA methylation fingerprint of 1628 human samples
In: Genome Research [22], 407-419 | Journal Article |
Feuerbach
[-] | 2007 | | Towards Comparative Epigenomics: A Pilot Study on DNA Methylation of CpG Islands on Human Chromosome 21
Universität des Saarlandes | Thesis - Masters thesis |
Feuerbach, Christopher, Halachev, Büch, Lengauer
(Ed: Meijer, Ried, Giaretti, Hamilton)
[-] | 2008 | | Towards Comparative Epigenomics: A Software Toolkit For Cross-Species Epigenome Data Analysis
In: Abstracts of the 2nd MC-GARD Meeting, 230 | Electronic Proceedings Article |
Feuerbach, Halachev, Assenov, Mueller, Bock, Lengauer
(Ed: Anisimova)
[-] | 2012 | | Analyzing epigenome data in context of genome evolution and human diseases
In: Evolutionary Genomics : Statistical and Computational Methods, Volume 2, 431-467
In: Methods of Molecular Biology [856], 431-467 | Part of a Book |
Feuerbach, Halachev, Lengauer, Bock
(Ed: Meijer, Ried, Giaretti, Hamilton)
[-] | 2009 | | An exhaustive methode for CpG island annotation
In: Special Issue: Abstracts of the 3rd MC-GARD Meeting, 146-146 | Poster |
Feuerbach, Lengauer
[-] | 2010 | | Ancestral germline methylation reconstruction of young repeats
In: Transcription, chromatin structure and DNA repair in development and differentiation, 81 | Poster |
Feuerbach, Lyngsoe, Lengauer, Hein
[-] | 2010 | | Comparative Epigenomiocs - Towards Ancestral Germline Methylome Reconstruction
In: Abstracts of papers presented at the 2010 meeting on The Biology of genomes, 87 | Poster |
Feuerbach, Lyngso, Lengauer, Hein
[-] | 2011 | | Reconstructing the ancestral germline methylation state of young repeats
In: Molecular Biology and Evolution [28], 1777-1784 | Journal Article |
Fischer
[-] | 2008 | | Structure-based prediction of HIV-1 drug resistance
Universität des Saarlandes | Thesis - Masters thesis |
Flockerzi, Maydt, Frank, Ruggieri, Maldener, Seifarth, Medstrand, Lengauer, Meyerhans, Leib-Mosch, Meese, Mayer
[-] | 2007 | | Expression pattern analysis of transcribed HERV sequences is complicated by ex vitvo recombination
In: Retrovirology [4], 39 | Journal Article |
Franke, Balschun, Karlsen, Sventoraityte, Nikolaus, Mayr, Domingues, Albrecht, Nothnagel, Ellinghaus, Sina, Onnie, Weersma, Stokkers, Wijmenga, Gazouli, Strachan, McArdle, Vermeire, Rutgeers, Rosenstiel, Krawczak, Vatn, IBSEN study group, Mathew, Schreiber
[-] | 2008 | | Sequence variants in IL10, ARPC2, and multiple other loci contribute to ulcerative colitis
In: Nature Genetics [40], 1319-1323 | Journal Article |
Franke, Balschun, Sina, Ellinghaus, Häsler, Mayr, Albrecht, Wittig, Buchert, Nikolaus, Gieger, Wichmann, Sventoraityte, Kupcinskas, Onnie, Gazouli, Anagnou, Strachan, McArdle, Mathew, Rutgeerts, Vermeire, Vatn, Krawczak, Rosenstiel, Karlsen, Schreiber
[-] | 2010 | | Genome-wide association study for ulcerative colitis identifies risk loci at 7q22 and 22q13 (IL17REL)
In: Nature Genetics [42], 292-294 | Journal Article |
Franke, Hampe, Rosenstiel, Becker, Wagner, Häsler, Little, Huse, Ruether, Balschun, Wittig, ElSharawy, Mayr, Albrecht, Prescott, Onnie, Fournier, Keith, Radelof, Platzer, Mathew, Stoll, Krawczak, Nürnberg, Schreiber
[-] | 2007 | | Systematic association mapping identifies NELL1 as a novel IBD disease gene
In: PLoS ONE [2], e691.1-13 | Journal Article |
Freudenberg, Zimmer, Hanisch, Lengauer
[-] | 2002 | | A hypergraph-based method for unification of existing protein structure- and sequence-families
In: In Silico Biology [2], 339 - 349 | Journal Article |
Frings
[-] | 2006 | | Development of a
Smith-Waterman-Like Multi-Aspect
Alignment Tool
Universität des Saarlandes | Thesis - Bachelor thesis |
Frishman, Albrecht, Blankenburg, Bork, Harrington, Hermjakob, Jensen, Juan, Lengauer, Pagel, Schachter, Valencia
(Ed: Frishman, Valencia)
[-] | 2009 | | Protein-protein interactions: analysis and prediction
In: Modern Genome Annotation - The Biosapiens Network, 353-410 | Part of a Book |
Galata
[-] | 2012 | | Applying Lasso regression to related cell types for gene network astimation
Universität des Saarlandes | Thesis - Bachelor thesis |
Garai, Zeke, Gógl, Töro, Fördos, Blankenburg, Bárkai, Varga, Alexa, Emig, Albrecht, Reményi
[-] | 2012 | | Specificity of linear motifs that bind to a common mitogen-activated protein kinase docking groove
In: Science Signaling [5], ra74,1-ra74,14 | Journal Article |
Gatzmann
[-] | 2010 | | GOdot Sequence - function prediction from protein sequence
Universität des Saarlandes | Thesis - Bachelor thesis |
Glaab
[-] | 2006 | | On the predictability of CpG methylation in human tissue at single basepair resolution
Universität des Saarlandes | Thesis - Bachelor thesis |
Guo
[-] | 2006 | | Improving Fold Recognition Using Protein
and Domain Interactions
Universität des Saarlandes | Thesis - Masters thesis |
Gu, Bock, Mikkelsen, Jäger, Smith, Tomazou, Gnirke, Lander, Meissner
[-] | 2010 | | Genome-scale DNA methylation mapping of clinical samples at single-nucleotide resolution
In: Nature Methods [7], 133-136 | Journal Article |
Gu, Kofler, Antes, Freund, Helms
[-] | 2005 | | Alternative Binding Modes of Polyproline Peptides Binding to the GYF Domain
In: Biochemistry [44], 6404-6415 | Journal Article |
Gu, Smith, Bock, Boyle, Gnirke, Meissner
[-] | 2011 | | Preparation of reduced representation bisulfite sequencing libraries for genome-scale DNA methylation profiling
In: Nature Protocols [6], 468-481 | Journal Article |
Gwinner
[-] | 2009 | | Assessing the Conservation of Protein Function on Evolutionary Defined Patches
Universität des Saarlandes | Thesis - Masters thesis |
Hahn, Costello, Lu, Lengauer, Schreiber
[-] | 2004 | | Expression analysis for inflammatory bowel disease
In: Workshop Poster Competition, ? | Poster |
Hahn, Costello, Lu, Lengauer, Schreiber
[-] | 2002 | | Expression analysis for inflammatory bowel disease
In: Proceedings of the n?th Conference on, ? | Poster |
Hahn, Rahnenführer, Talwar, Lengauer
[-] | 2005 | | Confirmation of human protein interaction data by human expression data
In: BMC Bioinformatics [6], 1-11 | Journal Article |
Haid
[-] | 2007 | | BSIFlex: Binding Site Identification including protein flexibility
Universität des Saarlandes | Thesis - Masters thesis |
Halachev
[-] | 2006 | | EpiGRAPHregression: A toolkit for (epi-)genomic correlation analysis and prediction of quantitative attributes
Universität des Saarlandes | Thesis - Masters thesis |
Halachev, Bast, Albrecht, Lengauer, Bock
[-] | 2012 | | EpiExplorer: live exploration and global analysis of large epigenomic datasets
In: Genome Biology [13], R96,1-R96,14 | Electronic Journal Article |
Halachev, Bast, Albrecht, Lengauer, Bock
[-] | 2012 | | EpiExplorer: live exploration and global analysis of large epigenomic datasets
In: Genome Biology [13], R96,1-R96,14 | Journal Article |
Hampe, Franke, Rosenstiel, Till, Teuber, Huse, Albrecht, Mayr, De La Vega, Briggs, Günther, Prescott, Onnie, Häsler, Sipos, Fölsch, Lengauer, Platzer, Mathew, Krawczak, Schreiber
[-] | 2007 | | A genome-wide association scan of nonsynonymous SNPs identifies a susceptibility variant for Crohn disease in ATG16L1
In: Nature Genetics [39], 207-211 | Journal Article |
Hanisch, Zien, Zimmer, Lengauer
[-] | 2002 | | Co-clustering of biological networks and gene expression data
In: Proceedings of the Tenth Conference on Intelligent Systems for Molecular Biology (ISMB 2002), 145-154 | Proceedings Article |
Hanisch, Zimmer, Lengauer
[-] | 2002 | | ProML - the Protein Markup Language for specification of protein sequences, structures and families
In: In Silico Biology [2], 313 - 324 | Journal Article |
Hannemann, Schön, Jansen, Putz, Lengauer
[-] | 2004 | | Modelling amorphous Si3B3N7: Structure and elastic properties
In: Physical Review [B 70], 144201-144201 | Journal Article |
Harrigan, McGovern, Dong, Thielen, Jensen, Mo, Chapman, Lewis, James, Valdez
[-] | 2009 | | Screening for HIV tropism using population-based V3 genotypic analysis: a retrospective outcome analysis using stored plasma screening samples from MOTIVATE-1
In: Abstracts presented at the XVIII International HIV Drug Resistance Workshop : Basic Principles & Clinical Implications, A17-A17 | Poster |
Harris, Wang, Coarfa, Nagarajan, Hong, Downey, Johnson, Fouse, Delaney, Zhao, Olshen, Ballinger, Zhou, Forsberg, Gu, Echipare, O'Geen, Lister, Pelizzola, Xi, Epstein, Bernstein, Hawkins, Ren, Chung, Gu, Bock, Gnirke, Zhang, Haussler, Ecker, Li, Farnham, Waterland, Meissner, Marra, Hirst, Milosavljevic, Costello
[-] | 2010 | | Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications
In: Nature Biotechnology [28], 1097-1105 | Journal Article |
Hartmann
[-] | 2008 | | Modeling of Flexible Side Chains for Protein-Ligand Docking
Universität des Saarlandes | Thesis - PhD thesis |
Hartmann, Antes, Lengauer
[-] | 2009 | | Docking and scoring with alternative side-chain conformations
In: Proteins: Structure, Function, and Bioinformatics [74], 712-726 | Journal Article |
Hartmann, Antes, Lengauer
[-] | 2007 | | IRECS: A new algorithm for the selection of most probable ensembles of side-chain conformations in protein models.
In: Protein Science [16], 1294-1307 | Journal Article |
Hauschild
[-] | 2011 | | Modeling HIV Neutralization
Universität des Saarlandes | Thesis - Masters thesis |
Hauschild, Baumbach, Baumbach
[-] | 2012 | | Integrated statistical learning of metabolic ion mobility spectrometry profiles for pulmonary disease identification
In: Genetics and Molecular Research [11], 2733-2744 | Electronic Journal Article |
Hauschild, Schneider, Pauling, Rupp, Jang, Baumbach, Baumbach
[-] | 2012 | | Computational Methods for Metabolomic Data Analysis of Ion Mobility Spectrometry Data - Reviewing the State of the Art
In: Metabolites [2], 733-755 | Electronic Journal Article |
Heckmann-Pohl, Bastian, Altmeier, Antes
[-] | 2006 | | Improvement of the fungal enzyme pyranose 2-oxidase using protein engineering
In: Journal of Biotechnology [124], 26-40 | Journal Article |
Heger, Thielen, Gilles, Obermeier, Lengauer, Kaiser, Trapp
[-] | 2012 | | APOBEC3G/F a one possible driving source for co-receptor switch of the human immunodeficiency virus-1
In: Medical Microbiology and Immunology [201], 7-16 | Journal Article |
Heger, Thielen, Gilles, Obermeier, Lengauer, Kaiser, Trapp
[-] | 2011 | | APOBEC3G/F as one possible driving force for co-receptor switch of the human immunodeficiency virus-1
In: Medical Microbiology and Immunology [201], 7-16 | Journal Article |
Heil, Ludwig, Lichtenberg-Fraté, Lengauer
[-] | 2006 | | Computational recognition of potassium channel sequences
In: Bioinformatics [13], 1562-1568 | Journal Article |
Hessler, Zimmermann, Matter, Evers, Naumann, Lengauer, Rarey
[-] | 2005 | | Multiple-Ligand-Based Virtual Screening: Methods and Applications of the MTree Approach
In: Journal of Medicinal Chemistry [48], 6575-6584 | Journal Article |
Hindle, Rarey, Buning, Lengauer
[-] | 2002 | | Flexible docking under pharmacophore type constraints
In: Journal of Computer-Aided Molecular Design [16], 129-149 | Journal Article |
Hobler
[-] | 2006 | | Docking of monosaccharids into the wild type and mutants of pyranose 2-oxidase
Universität des Saarlandes | Thesis - Bachelor thesis |
Hoffmann, Schnaible, Wefing, Albrecht, Hanisch, Zimmer
(Ed: Hoffmann)
[-] | 2002 | | A new method for the fast solution of protein-3D-structures, combining experiments and bioinformatics
In: Coupling of Biological and Electronic Systems: Proceedings of the 2nd Caesarium, Bonn, 1-3 November 2000, 59-78 | Proceedings Article |
Hofmann, Chung, Osbahr, Susser, Karey, Mihm, Welsch, Lötsch, Sarrazin, Zeuzem, Herrmann
[-] | 2011 | | Impact of ribavirin on HCV replicon RNA decline during treatment with interferon-α and the protease inhibitors boceprevir or telaprevir
In: Antiviral Therapy [16], 695-704 | Journal Article |
Hofmann, Fernandez, Herrmann, Welsch, Mihm, Kronenberg, Feldmann, Spengler, Zeuzem, Sarrazin
[-] | 2007 | | Somatic hypermutation and mRNA expression levels of the BCL-6 gene in patients with hepatitis C virus-associated lymphoproliferative diseases
In: Journal of Viral Hepatitis [14], 484-491 | Journal Article |
Hofmann, Herrmann, Kronenberger, Merkwirth, Welsch, Lengauer, Zeuzem, Sarrazin
[^] | 2004 | | Association of HCV-related mixed cryoglobulinemia with specific mutational patterns of the HCV E2 protein and CD81 expression on peripheral B lymphocytes
In: Blood [104], 1228-1229 | Journal Article |
Hofmann, Welsch, Takahashi, Miyajima, Mihm, Krick, Zeuzem, Sarrazin
[-] | 2007 | | Identification and in silico characterization of a novel compound heterozygosty associated with hereditary aceruloplasminemia
In: Scandinavian Journal of Gastroenterology [42], 1088-1094 | Journal Article |
Hoinka
[-] | 2011 | | Finding the Hairpin in the Haystack: Towards an High Throughput in Silico Pipeline for Aptamer Motif Identification using SELEX Data
Universität des Saarlandes | Thesis - Masters thesis |
Hornstein, Hoffmann, Alexa, Yamanaka, Müller, Jung, Rahnenführer, Schulz
[-] | 2008 | | Protein phosphatase and TRAIL receptor genes as new candidate tumor genes on chromosome 8p in prostate cancer
In: Cancer Genomics & Proteomics [5], 123-136 | Journal Article |
Huthmacher
[-] | 2006 | | Decomposing Protein Networks Into
Domain-Domain Interactions
Eberhard Karls University Tübingen | Thesis - other |
Immesberger
[-] | 2005 | | A Prefiltering Method to Speed up Protein
Structure Prediction
Universität des Saarlandes | Thesis - Bachelor thesis |
Ivanova
[-] | 2011 | | Comparison of methods for discovering genomic aberrations relevant for cancer
Universität des Saarlandes | Thesis - Masters thesis |
James, Das, Rahnenführer, Ahmad
[-] | 2004 | | Cellular and Molecular Characterization of Early and Late Retinal Stem Cells/Progenitors: Differential Regulation of Proliferation and Context Dependent Role of Notch Signaling
In: Journal of Neurobiology [61], 359-376 | Journal Article |
James, Das, Rahnenführer, Leon, Ahmad
[-] | 2003 | | Identification of rat brahma (rBRM), a subunit of SWI/SNF chromatin remodeling complex: Involvement in the differentiation of retinal stem cells/progenitors | Miscellaneous |
James, Das, Zhao, Rahnenführer, Ahmad
[-] | 2004 | | Identification of c-Kit receptor as a regulator of adult neural stem cells in the mammalian eye: interactions with Notch signaling
In: Developmental Biology [273], 87-105 | Journal Article |
Janssen, Rahnenführer
[Janssen] | 2003 | | A hazard based approach to dependence tests for bivariate censored models
In: Mathematical Methods in Statistics [11], 297-322 | Journal Article |
Jenkinson, Albrecht, Birney, Blankenburg, Down, Finn, Hermjakob, Hubbard, Jimenez, Jones, Kähäri, Kulesha, Macías, Reeves, Prlić
[-] | 2008 | | Integrating biological data - the Distributed Annotation System
In: BMC Bioinformatics [9], S3.1-7 | Journal Article |
Jing
[-] | 2011 | | A comprehensive analysis of the illumina Infinium assay
Universität des Saarlandes | Thesis - Masters thesis |
Jose, Betschieder, Ray, Lengauer, Zangen
[-] | 2003 | | New inhibitors of human cathepsin G identified by surface display library screening and peptide-protein docking
In: 7th International Symposium on Pharmaceutical Sciences (ISOPS-7), 46-49 | Proceedings Article |
Jung
[-] | 2006 | | Yamada Analyzer - A tool for fast calculation of genomic attributes
Universität des Saarlandes | Thesis - Bachelor thesis |
Junge
[-] | 2011 | | Unsupervised dissection of cancer types based on genomic, epigenomic and transciptomic features
Universität des Saarlandes | Thesis - Bachelor thesis |
Kacprowski
[-] | 2011 | | Disease gene prioritization by combining network information and functional knowledge
Universität des Saarlandes | Thesis - Masters thesis |
Kacprowski
[-] | 2010 | | Analysis of protein complexes and tissue-spedific expression
Universität des Saarlandes | Thesis - Bachelor thesis |
Kämper, Apostolakis, Lengauer
(Ed: Borkakoti)
[-] | 2002 | | Docking of Bacterial Cell-Wall Fragments into Glycopeptide Antibiotics
In: From Genes to Drugs via Crystallography: 33rd crytallographic course at the E. Majorana Center, 49 | Poster |
Kämper, Apostolakis, Rarey, Marian, Lengauer
[-] | 2006 | | Fully Automated Flexible Docking of Ligands into Flexible Synthetic Receptors Using Forward and Inverse Docking Strategies
In: Journal of Chemical Information and Modeling [46], 903-911 | Journal Article |
Kämper, Apostolakis, Rarey, Marian, Lengauer
[-] | 2001 | | Docking of Ligands into Artificial Receptors | Miscellaneous |
Kämper, Apostolakis, Rarey, Marian, Lengauer
[Apostolakis, Rarey, Marian] | 2001 | | Docking of Ligands into Artificial Receptors
In: Electronically Excited Molecules: Structure and Dynamics, 37th Symposium for Theoretical Chemistry, P76 | Proceedings Article |
Kämper, Kaspar, Lengauer
[-] | 2005 | | Efficient conformational analysis of synthetic receptors with macrocyclic and fused ring systems
In: Synthetic Receptors 2005: Second World Congress on Synthetic Receptors, O4 | Proceedings Article |
Kämper, Lengauer
[-] | 2003 | | ECLIPPSE: Environment for Chemical Library Inspection, Pre- and Postprocessing, and Screening Evaluation. User Guide | Manual |
Kämper, Lengauer
[-] | 2003 | | Virtual Screening for novel Urease Inhibitors
In: Proceedings of the International Workshop on New Approaches in Drug Design & Discovery, 39 | Poster |
Kämper, Lengauer
[-] | 2002 | | Docking of Ligands into Molecular Tweezers and Molecular Clips
In: Workshop of the SFB 624 'Templates', ?-? | Poster |
Kämper, Rognan, Lengauer
(Ed: Lengauer)
[-] | 2007 | | Lead Identification by Virtual Screening
In: Bioinformatics - From Genomes to Therapies 2. Getting at the Inner Workings: Molecular Interactions, 651-704 | Part of a Book |
Kaiser, Boussaad, Lehmann, Däumer, Sing, Schmeisser, Wyen, Fätkenheuer
[-] | 2005 | | Stable coreceptor usage of HIV-1 in patients with ongoing treatment failure on HAART
In: Proceedings of the 3rd European HIV Drug Resistance Workshop, - | Proceedings Article |
Kalaghatgi
[-] | 2012 | | A Phylodynamic Study of HIV Transmission Networks in Europe
Universität des Saarlandes | Thesis - Masters thesis |
Kalinina, Oberwinkler, Glass, Kräusslich, Russell, Briggs
[-] | 2012 | | Computational Identification of Novel Amino-Acid Interactions in HIV Gag via Correlated Evolution
In: PLoS ONE [7], e42468,1-e42468,5 | Electronic Journal Article |
Kamp, Wolf, Bravo, Kraus, Krause, Neumann, Winskowsky, Thielen, Werner, Schnierle
[-] | 2010 | | Decreased HIV diversity after allogeneic stem cell transplantation of an HIV-1 infected patient: a case report.
In: Virology Journal [7], 55,1-55,9 | Electronic Journal Article |
Kamradt, Jung, Wahrheit, Tolosi, Rahnenführer, Schilling, Walker, Davis, Stöckle, Meltzer, Wullich
[-] | 2007 | | Detection of Novel Amplicons in Prostate Cancer by Comprehensive Genomic Profiling of Prostate Cancer Cell Lines Using Oligonucleotide-Based ArrayCGH
In: PLoS ONE [2], e769 | Electronic Journal Article |
Kaspar
[-] | 2006 | | Automated conformational analysis of macrocyclic ring systems
Universität des Saarlandes | Thesis - Masters thesis |
Kaspar
[-] | 2005 | | Conformational Analysis of Macrocyclic Ring Systems
Universität des Saarlandes | Thesis - Bachelor thesis |
Ketter, Kim, Storck, Rahnenführer, Romeike, Steudel, Zang, Henn
[-] | 2007 | | Hyperdiploidy defines a distinct cytogenetic entity of meningiomas
In: Journal of Neuro-Oncology [83], 213-221 | Journal Article |
Ketter, Urbschat, Henn, Feiden, Beerenwinkel, Lengauer, Steudel, Zang, Rahnenführer
[-] | 2007 | | Application of oncogenetic trees mixtures as a biostatistical model of the clonal cytogenetic evolution of meningiomas
In: International Journal of Cancer [121], 1473-1480 | Journal Article |
Kircher
[-] | 2007 | | In silico analysis of microRNA genes on human chromosome 14 and mouse chromosome 12
Universität des Saarlandes | Thesis - Masters thesis |
Kircher, Bock, Paulsen
[-] | 2008 | | Structural conservation versus functional divergence of maternally expressed microRNAs in the Dlk1/Gtl2 imprinting region
In: BMC Genomics [9], 346 | Journal Article |
Klingen
[-] | 2012 | | Automatic Recombination Analysis Using Recoo and Mebitoo
Universität des Saarlandes | Thesis - Bachelor thesis |
Knoepfel, Di Giallonardoc, Däumer, Thielen, Metzner
[-] | 2011 | | In-depth analysis of G-to-A hypermutation rate in HIV-1 env DNA induced by endogenous APOBEC3 proteins using massively parallel sequencing
In: Journal of Virological Methods [71], 329-338 | Journal Article |
König
[-] | 2012 | | Automatic detection of loss of heterozygosity in cancer
Universität des Saarlandes | Thesis - Masters thesis |
König
[-] | 2010 | | Env-wide analysis of coreceptor determining sites and subtype-specific differences in HIV-1
Universität des Saarlandes | Thesis - Bachelor thesis |
Kono, Bozek, Domingues, Shioda, Nakayama
[-] | 2009 | | Impact of a single amino acid in the variable region 2 of the Old World monkey TRIM5alpha SPRY (B30.2) domain on anti-human immunodeficiency virus type 2 activity
In: Virology [388], 160-168 | Journal Article |
Korbel
[-] | 2007 | | Identification of Symmetries in Molecules and Complexes
Universität des Saarlandes | Thesis - Masters thesis |
Koser
[-] | 2012 | | Reconstructing anecestral methylation states in phylogenetic trees
Universität des Saarlandes | Thesis - Masters thesis |
Krier
[-] | 2005 | | Motif Search in Protein Sequences for Protein
Structure Prediction
Universität des Saarlandes | Thesis - Bachelor thesis |
Krol, Blom, Winnebald, Berhörster, Barnett, Goesmann, Baumbach, Becker
[-] | 2011 | | RhizoRegNet - A database of rhizobial transcription factors and regulatory networks.
In: Journal of Biotechnology [155], 127-134 | Journal Article |
Kuhn Cuellar
[-] | 2010 | | A probabilistic algorithm for matching protein structures - and its application to detecting functionally relevant patterns
Universität des Saarlandes | Thesis - Masters thesis |
Kumar, Sun, Vamathevan, Li, Ingraham, Palmer, Huang, Brown
[-] | 2011 | | Comparative Genomics of Klebsiella pneumoniae Strains with Different Antibiotic Resistance Profiles
In: Antimicrobial Agents and Chemotherapy [55], 4267-4276 | Journal Article |
Kunert
[-] | 2011 | | Maximal Common Subgraph DAGs: Theory and Application to Virtual Screening in Drug Development
Universität des Saarlandes | Thesis - PhD thesis |
Kupfer, Sing, Schüffler, Hall, Kurz, McKeown, Schneweis, Eberl, Oldenburg, Brackmann, Rockstroh, Spengler, Däumer, Kaiser, Lengauer, Matz
[-] | 2007 | | Fifteen years of env C2V3C3 evolution in six individuals clonally infected with human immunodeficiency virus type 1
In: Journal of Medical Virology [79], 1629-1639 | Journal Article |
Kuroishi, Bozek, Shioda, Nakayama
[-] | 2010 | | A single amino acid substitution of the human immunodeficiency virus type 1 capsid protein affects viral sensitivity to TRIM5 alpha.
In: Retrovirology [7], 58,1-58,10 | Electronic Journal Article |
Lange, Roomp, Dragan, Nattermann, Michalk, Spengler, Weich, Lengauer, Zeuzem, Berg, Sarrazin
[-] | 2010 | | HLA class I allele associations with HCV genetic variants in patients with chronic HCV genotypes 1a or 1b infection
In: Journal of Hepatology [53], 1022-1028 | Journal Article |
Lawyer, Altmann, Thielen, Zazzi, Sönnerborg, Lengauer
[-] | 2011 | | HIV-1 mutational pathways under multidrug therapy
In: AIDS Research and Therapy [8], 1-13 | Journal Article |
Lawyer, Ferkingstad, Nesvåg, Varnäs, Agartz
[-] | 2009 | | Local and covariate-modulated false discovery rates applied in neuroimaging
In: NeuroImage [47], 213-219 | Journal Article |
Lawyer, Nesvåg, Varnäs, Okugawa, Agartz
[-] | 2009 | | Grey and white matter proportional relationships in the cerebellar vermis altered in schizophrenia
In: Cerebellum [8], 52-60 | Journal Article |
Lawyer, Schülter, Kaiser, Reuter, Oette, Lengauer
[-] | 2012 | | Endogenous or exogenous spreading of HIV-1 in Nordrhein-Westfalen, Germany, investigated by phylodynamic analysis of the RESINA Study cohort
In: Medical Microbiology and Immunology [201], 259-269 | Journal Article |
Lehmann, Däumer, Bousaad, Sing, Beerenwinkel, Lengauer, Schmeisser, Wyen, Fätkenheuer, Kaiser
[-] | 2006 | | Stable coreceptor usage of HIV in patients with ongoing treatment failure on HAART
In: Journal of Clinical Virology [37], 300-304 | Journal Article |
Lengauer
(Ed: Bullinger)
[-] | 2007 | | Bioinformatik
In: Technologiefüher - Grundlagen, Anwendungen, Trends, 4 | Part of a Book |
Lengauer
(Ed: Honnefelder, Propping)
[-] | 2001 | | Bioinformatik an der Schwelle zur postgenomischen Ära
In: Was wissen wir, wenn wir das menschliche Genom kennen, 56-62 | Part of a Book |
Lengauer
(Ed: Lengauer)
[-] | 2007 | | Future Trends
In: Bioinformatics - From Genomes to Therapies 3. The Holy Grail: Molecular Function, 1651-1687 | Part of a Book |
Lengauer
(Ed: Lengauer)
[-] | 2007 | | Introduction
In: Bioinformatics - From Genomes to Therapies 1. The Building Blocks: Molecular Sequences and Structures, 1-24 | Part of a Book |
Lengauer
(Ed: Meyers)
[-] | 2005 | | Informatics (Computational Biology)
In: Growth Factors and Oncogenes in Gastrointestinal Cancers to Informatics (Computational Biology), 567-626 | Part of a Book |
Lengauer
(Ed: Reuse, Vollmar)
[-] | 2007 | | Strategiekonzept "Molekulare Bioinformatik"
In: Informatikforschung in Deutschland, 9 | Part of a Book |
Lengauer
[-] | 2012 | | Bioinformatical Assistance of Selecting Anti-HIV Therapies: Where Do We Stand?
In: Intervirology [55], 108-112 | Journal Article |
Lengauer
[-] | 2003 | | Analyzing resistance phenomena in HIV with bioinformatics methods
In: Bioinformatics [19], 92i | Journal Article |
Lengauer
[-] | 2002 | | Ausbildung im Bereich Bioinformatik
In: Ernst & Young Report Biotechnologie, Segmentreport Bioinformatik [1], 57-58 | Journal Article |
Lengauer
[-] | 2002 | | Preface: Special RECOMB 2001 Issue
In: Journal of Computational Biology [9], 147-148 | Journal Article |
Lengauer (ed.)
(Ed: Lengauer)
[-] | 2011 | | Computermodelle in der Wissenschaft - zwischen Analyse, Vorhersage und Suggestion | Book |
Lengauer (ed.)
(Ed: Lengauer)
[-] | 2007 | | Bioinformatics - From Genomes to Therapies 1. The Building Blocks: Molecular Sequences and Structures | Book |
Lengauer (ed.)
(Ed: Lengauer)
[-] | 2007 | | Bioinformatics - From Genomes to Therapies 2. Getting at the Inner Workings: Molecular Interactions | Book |
Lengauer (ed.)
(Ed: Lengauer)
[-] | 2007 | | Bioinformatics - From Genomes to Therapies 3. The Holy Grail: Molecular Function | Book |
Lengauer (ed.)
(Ed: Lengauer)
[-] | 2001 | | From Genomes to Drugs | Book |
Lengauer, Albrecht, Domingues
(Ed: Meyers)
[-] | 2012 | | Computational Biology
In: Encyclopedia of Molecular Cell Biology and Molecular Medicine, 1-71 | Part of a Book |
Lengauer, Albrecht, Sarrazin, Mihm, Herrmann, Welsch, Sarrazin, Traver, Zeuzem
[-] | 2005 | | Replication enhancing mutations of the Hepatitis C virus replicon: Prevalence and clinical significance in patients with chronic Hepatitis C
In: Journal of Infectious Diseases [192], 1710-1719 | Journal Article |
Lengauer, Altmann, Thielen
[-] | 2009 | | Bioinformatische Unterstützung der Auswahl von HIV Therapien
In: Informatik Spektrum [32], 320-331 | Journal Article |
Lengauer, Altmann, Thielen, Kaiser
[-] | 2010 | | Chasing the AIDS Virus
In: Communications of the ACM [53], 66-74 | Journal Article |
Lengauer, Beerenwinkel, Schmidt, Walter, Kaiser, Hoffmann, Korn, Selbig
[-] | 2001 | | Geno2pheno: a new machine learning approach to predicting phenotypic drug resistance from genotype
In: Antiviral Therapy [6], 104 | Journal Article |
Lengauer, Domingues, Sommer, Zhu
[-] | 2006 | | Analysis and prediction of protein-protein-interaction types
In: BMC Bioinformatics [7], - | Journal Article |
Lengauer, Kaiser
[-] | 2009 | | Computerjagd auf das AIDSVIRUS
In: Spektrum der Wissenschaft [08], 62-67 | Journal Article |
Lengauer, Lemmen, Rarey, Zimmermann
[-] | 2004 | | Novel technologies for virtual screening
In: Drug Discovery Today [9], 27-34 | Journal Article |
Lengauer, Lenhof (ed.)
(Ed: Lengauer, Lenhof)
[-] | 2002 | | Proceedings of the European Conference on Computational Biology (ECCB 2002) | Proceedings |
Lengauer, Merkwirth
[-] | 2005 | | Automatic Generation of complementary descriptors with molecular graph networks
In: Journal of Chemical Information and Modeling [45], 1159-1168 | Journal Article |
Lengauer, Oette, Selbig, Hoffmann, Poggensee, Hamouda, Häussinger, Kaiser (ed.)
(Ed: Lengauer, Oette, Selbig, Hoffmann, Poggensee, Hamouda, Häussinger, Kaiser)
[-] | 2007 | | European Journal of Medical Research | Journal |
Lengauer, Rost, Schuster (ed.)
(Ed: Lengauer, Rost, Schuster)
[-] | 2007 | | Proceedings ISMB2007 | Proceedings |
Lengauer, Sander, Sierra, Thielen, Kaiser
[-] | 2007 | | Bioinformatics prediction of HIV coreceptor usage
In: Nature Biotechnology [25], 1407-1410 | Journal Article |
Lengauer, Sankoff, Istrail, Pevzner, Waterman (ed.)
(Ed: Lengauer, Sankoff, Istrail, Pevzner, Waterman)
[-] | 2001 | | Proceedings of the 5th Annual Conference on Research in Computational Molecular Biology (RECOMB2001) | Book |
Lengauer, Schäfer
(Ed: Jäger, Krebs)
[-] | 2003 | | Combinatorial Optimization Techniques for Three-Dimensional Arrangement Problems
In: Mathematics - Key Technology for the Future, 63-73 | Part of a Book |
Lengauer, Sierra, Kaiser
[-] | 2009 | | Resistenzbestimmung
In: MMW Fortschritte in der Medizin [151], 74-75 | Journal Article |
Lengauer, Sing
[-] | 2006 | | Bioinformatics-assisted anti-HIV therapy
In: Nature Reviews Microbiology [4], 790-797 | Journal Article |
Lienhart, Maydt
[-] | 2002 | | An Extended Set of Haar-like Features for Rapid Object Detection
In: Proceedings of the International Conference on Image Processing, 900-903 | Proceedings Article |
Lisurek, Simgen, Antes, Bernhardt
[-] | 2008 | | Theoretical and Experimental Evaluation of a CYP106A2 Low Homology Model and Production of Mutants with Changed Activity and Selectivity of Hydroxylation
In: ChemBioChem [9], 1439-1449 | Journal Article |
Liu, Tostesen, Sundet, Jenssen, Bock, Jerstad, Thilly, Hovig
[-] | 2007 | | The human genomic melting map
In: PLoS Computational Biology [3], e93 | Journal Article |
Loi
[-] | 2010 | | Identifying discriminative motifs for molecular function of proteins
Universität des Saarlandes | Thesis - Masters thesis |
Low, Dong, Chan, Sing, Swanstrom, Jensen, Pillai, Good, Harrigan
[-] | 2007 | | Current V3 genotyping algorithms are inadequate for predicting X4 co-receptor usage in clinical isolates
In: AIDS [21], F19-F26 | Journal Article |
Lucas, Heim, Negri, Antes, Ries, Schewe, Bisi, Gobbi, Hartmann
[-] | 2008 | | Novel Aldosterone Synthase Inhibitors with Extended Carbocyclic Skeleton by a Combined Ligand-Based and Structure-Based Drug Design Approach
In: Journal of Medical Chemistry [51], 6138-6149 | Journal Article |
Lutsik
[-] | 2010 | | Processing of high-throughput DNA methylation data
Universität des Saarlandes | Thesis - Masters thesis |
Lutsik, Feuerbach, Arand, Lengauer, Walter, Bock
[-] | 2011 | | BiQ Analyzer HT: locus-specific analysis of DNA methylation by high-throughput bisulfite sequencing
In: Nucleic Acids Research [39], W551-W556 | Journal Article |
Mangels
[-] | 2009 | | In Silico Models for the Prediction of Metabolism by Cytochrome P450 Enzymes
Universität des Saarlandes | Thesis - Bachelor thesis |
Marcil, Brooks-Wilson, Clee, Roomp, Zhang, Yu, Collins, van Dam, Molhuizen, Loubser, Ouelette, Sensen, Fichter, Mott, Denis, Boucher, Pimstone, Genest, Kastelein, Hayden
[Marcil, Brooks-Wilson, Clee, Zhang, Yu, Collins, van Dam, Molhuizen, Loubser, Ouelette, Sensen, Fichter, Mott, Denis, Boucher, Pimstone, Genest, Kastelein, Hayden] | 1999 | | Mutations in the ABC1 gene in familial HDL deficiency with defective cholesterol efflux
In: The Lancet [354], 1341-6 | Journal Article |
Maydt
[-] | 2008 | | Analysis of recombination in Molecular Sequence Data
Universität des Saarlandes | Thesis - PhD thesis |
Maydt, Lengauer
[-] | 2006 | | Recco: recombination analysis using cost optimization
In: Bioinformatics [22], 1064-1071 | Journal Article |
Maydt, Lienhart
[-] | 2002 | | A Fast Method for Training Support Vector Machines With a Very Large Set of Linear Features
In: Proceedings of the International Conference on Multimedia and Expo, 309-312 | Proceedings Article |
Mayr, Domingues, Lackner
[-] | 2007 | | Comparative Analysis of Protein Structure Alignments
In: BMC Structural Biology [7], 1 | Journal Article |
McGovern, Thielen, Mo, Dong, Woods, Chapman, Lewis, James, Heera, Valdez, Harrigan
[-] | 2010 | | Population-based V3 genotypic tropism assay: a retrospective analysis using screening samples from the A4001029 and MOTIVATE studies
In: AIDS [24], 2517-2525 | Journal Article |
McHardy, Adams
[-] | 2009 | | The role of genomics in tracking the evolution of influenza A virus
In: PLoS Pathog [5], e1000566 | Electronic Journal Article |
Meiser
[-] | 2005 | | Identification of functionally important regions in cytochrome P450 systems and a systematic analysis of various CYP P450 homology models
Universität des Saarlandes | Thesis - Bachelor thesis |
Mekhubad, Bock, de Boer, Kiskinis, Meissner, Eggan
[-] | 2012 | | Erosion of dosage compensation impacts human iPSC disease modeling
In: Cell Stem Cell [10], 595-609 | Journal Article |
Merkwirth, Bröcker, Ogorzalek, Wichard
[-] | 2004 | | Finite iteration DT-CNN - new design and operation principles
In: Proceedings (ISCAS-04) : 2004 IEEE International Symposium on Circuits and Systems. - Vol. 5, Blind signal processing, computer-aided network design, invited sessions, neural sytems and applications, power systems and power electronic circuits, 504-507 | Proceedings Article |
Merkwirth, Mauser, Schulz-Gasch, Roche, Stahl, Lengauer
[-] | 2004 | | Ensemble methods for classification in cheminformatics
In: Journal of Chemical Information and Modeling [44], 1971-1978 | Journal Article |
Merkwirth, Ogorzalek, Wichard
(Ed: Ogorzalek, Galias, Garda, Kadeja)
[-] | 2003 | | Stochastic Gradient Descent Training of Ensembles of DT-CNN Classifiers for Digit Recognition
In: Proceedings of the 16th European Conference on Circuit Theory and Design ECCTD'03, 337-341 | Proceedings Article |
Mihm, Ackermann, Welsch, Herrmann, Hofmann, Grigorian, Welker, Lengauer, Zeuzem, Sarrazin
[-] | 2009 | | Clinical relevance of the 2'-5'-oligoadenylate synthetase/RNase L system for treatment response in chronic hepatitis C
In: Journal of Hepatology [50], 49-58 | Journal Article |
Mihm, Grigorian, Welsch, Herrmann, Kronenberger, Teuber, von Wagner, Hofmann, Albrecht, Lengauer, Zeuzem, Sarrazin
[-] | 2006 | | Amino acid variations in hepatitis C virus p7 and sensitivity to antiviral combination therapy with amantadine in chronic hepatitis C
In: Antiviral Therapy [11], 507-519 | Journal Article |
Mihm, Hofmann, Welsch, Polta, Lengauer, Zeuzem, Sarrazin, Herrmann
[-] | 2010 | | Effect of ribavirin on the frequency of RNAse L cleavage sites within the hepatitis C viral genome
In: Journal of Viral Hepatitis [17], 217-221 | Journal Article |
Mikeska, Bock, Do, Dobrovic
[-] | 2012 | | DNA methylation biomarkers in cancer: Progress towards clinical implementation
In: Expert Reviews of Molecular Diagnostics [12], 473-487 | Journal Article |
Mikeska, Bock, El-Maarri, Hübner, Ehrentraut, Schramm, Felsberg, Kahl, Büttner, Pietsch, Waha
[-] | 2007 | | Optimization of Quantitative MGMT Promoter Methylation Analysis Using Pyrosequencing and Combined Bisulfite Restriction Analysis
In: Journal of Molecular Diagnostics [9], 368-381 | Journal Article |
Moores, Thielen, Dong, Low, Woods, Jensen, Wynhoven, Chan, Glascock, Harrigan
[-] | 2008 | | Improved detection of X4 virus by V3 genotyping: application to plasma RNA and proviral DNA
In: Antiviral Therapy, A99 | Poster |
Morris, Apeltsin, Newman, Baumbach, Wittkop, Su, Bader, Ferrin
[-] | 2011 | | clusterMaker: A Multi-algorithm Clustering Plugin for Cytoscape
In: BMC Bioinformatics [12], 436,1-436,14 | Journal Article |
Moser, Ekawardhani, Kumsta, Palmason, Bock, Athanassiadou, Lesch, Meyer
[-] | 2009 | | Functional Analysis of a Potassium-Chloride Co-Transporter 3 (SLC12A6) Promoter Polymorphism Leading to an Additional DNA Methylation Site
In: Neuropsychopharmacology [34], 458-467 | Journal Article |
Müller
[-] | 2012 | | Extracting pathways from biological networks incorporating omics data, introducing a webinterface for KeyPathwayMiner
Universität des Saarlandes | Thesis - Masters thesis |
Müller
[-] | 2009 | | Assessing Antibody Neutralization of HIV-1 as an Initial Step in the Search for gp160-based Immunogens
Universität des Saarlandes | Thesis - Masters thesis |
Müller
[-] | 2008 | | Inferring virological response to antiretroviral combination therapy based on past treatment lines
Universität des Saarlandes | Thesis - Bachelor thesis |
Müller
[-] | 2007 | | Using Shape Retrieval Techniques for Identifying Similar Protein Binding Sites
Universität des Saarlandes | Thesis - Masters thesis |
Nebot, Ye, Albrecht, Eom, Weikum
[-] | 2011 | | DIDO: a disease-determinants ontology from web sources
In: Proceedings of the 20th International Conference on World Wide Web (WWW 2011), 237-240 | Proceedings Article |
Neumann-Fraune, Beggel, Pfister, Kaiser, Verheyen
[-] | 2013 | | High frequency of complex mutational patterns in lamivudine resistant hepatitis B virus isolates
In: Journal of Medical Virology [200], 39-49 | Journal Article |
Neumann, Kohlbacher, Merkwirth, Lengauer
[-] | 2006 | | A Fully Computational Model for Predicting Percutaneous Drug Absorption
In: Journal of Chemical Information and Modeling [1], 424-429 | Journal Article |
Neumann, Kohlbacher, Merkwirth, Lengauer
[-] | 2006 | | Prediction of percutaneous drug absorption
In: Journal of Chemical Information and Modeling [1], 424-429 | Journal Article |
Nickels
[-] | 2005 | | Generating Molecular Hashcodes for
Finding Duplicates in Virtual Screening
Libraries
Universität des Saarlandes | Thesis - Bachelor thesis |
Nishida, Hirano, Tsukamoto, Nagano, Ikegami, Roomp, Ishihara, Sakane, Zhang, Tsujii, Matsuyama, Ohama, Matsuura, Ishigami, Sakai, Hiraoka, Hattori, Wellington, Yoshida, Misugi, Hayden, Egashira, Yamashita, Matsuzawa
[Nishida, Hirano, Tsukamoto, Nagano, Ikegami, Ishihara, Sakane, Zhang, Tsujii, Matsuyama, Ohama, Matsuura, Ishigami, Sakai, Hiraoka, Hattori, Wellington, Yoshida, Misugi, Hayden, Egashira, Yamashita, Matsuzawa] | 2002 | | Expression and Functional Analyses of Novel Mutations ot ATP-Binding Cassette Transporter-1 in Japanese Patients with High-Density Lipoprotein Deficiency
In: Biochemical and Biophysical Research Communications [290], 713-721 | Journal Article |
Obermeier, Berg, Sichtig, Braun, Däumer, Walter, Noah, Wolf, Müller, Stürmer, Thielen, Kaiser
[-] | 2008 | | Determination of HIV-1 co-receptor usage in German patients – comparison of genotypic methods with the TROFILE® phenotypic assay
In: Abstracts of the Ninth International Congress on Drug Therapy in HIV Infection, 123 | Poster |
Obermeier, Camacho, Charpentier, Deschamps, Eberle, Gürtler, Ruelle, Pironti, Brun-Veziet, Stürmer, Kaiser
(Ed: Kippax, Salif Sow, Wainberg, Heidari)
[-] | 2012 | | HIV2EU: supporting standardized HIV-2 drug resistance interpretation in Europe
In: Journal of the International AIDS Society, 135 | Poster |
Obermeier, Pironti, Berg, Braun, Däumer, Eberle, Ehret, Kaiser, Kleinkauf, Korn, Kücherer, Müller, Noah, Stürmer, Thielen, Wolf, Walter
[-] | 2012 | | HIV-GRADE: A Publicly Available, Rules-Based Drug Resistance Interpretation Algorithm Integrating Bioinformatic Knowledge
In: Intervirology [55], 102-107 | Journal Article |
Obermeier, Sichtig, Braun, Däumer, Walter, Noah, Wolf, Müller, Stürmer, Kaiser, Thielen
[-] | 2008 | | Determination of HIV-1 coreceptor usage in German patients - comparison of genotypic methods with the TROFILE phenotypic assay
In: Antiviral Therapy, A112 | Poster |
Öhsen von, Sommer, Zimmer, Lengauer
[-] | 2004 | | Arby: Automatic protein structure prediction using profile-profile alignment and confidence measures
In: Bioinformatics [20], 2228-2235 | Journal Article |
Oette, Schulter, Rosen-Zvi, Peres, Zazzi, Sonnerborg, Struck, Altmann, Kaiser
[-] | 2012 | | Efficacy of antiretroviral therapy switch in HIV-infected patients: A 10-year analysis of the EuResist cohort
In: Intervirology [55], 160-166 | Journal Article |
Olsen, Antony, Ryde, Adolph, Hemmingsen
[-] | 2003 | | Lactam hydrolysis catalyzed by mononuclear metallo-beta-lactamases: a density functional study
In: Journal of Physical Chemistry / B [107], 2366-2375 | Journal Article |
Pauling, Röttger, Neuner, Salgado, Collado-Vides, Kalaghatgi, Azevedo, Tauch, Pühler, Baumbach
[-] | 2012 | | On the trail of EHEC/EAEC - unraveling the gene regulatory networks of human pathogenic Escherichia coli bacteria
In: Integrative Biology [4], 728-733 | Journal Article |
Pauling, Röttger, Tauch, Azevedo, Baumbach
[-] | 2012 | | CoryneRegNet 6.0 - Updated database content, new analysis methods and novel features focusing on community demands
In: Nucleic Acids Research [40], D610-D614 | Journal Article |
Peinado, Lengauer
[-] | 2003 | | Parallel "go with the winners algorithms" in Distributed Memory Models
In: Journal of Parallel and Distributed Processing [63], 801-814 | Journal Article |
Perner
[-] | 2010 | | Finding local similarities in gene expression patterns between partially reprogrammed cells and know cell types using a module network approach
Universität des Saarlandes | Thesis - Masters thesis |
Perner
[-] | 2008 | | Semi-Supervised Learning for Predicting Anti-HIV Drug Resistance
Universität des Saarlandes | Thesis - Bachelor thesis |
Pfeifer
[-] | 2006 | | Development of a fast
geometry-based screening
compound prefiltering technique
Universität des Saarlandes | Thesis - Bachelor thesis |
Pfeifer, Lengauer
[-] | 2012 | | Improving HIV coreceptor usage prediction in the clinic using hints from next-generation sequencing data
In: Bioinformatics [28], i589-i595 | Journal Article |
Pironti
[-] | 2009 | | Probabilistic disease gene prioritization
Universität des Saarlandes | Thesis - Masters thesis |
Pironti, Altmann, Büch, Lengauer
[-] | 2011 | | A Computational Method for Predicting First-Line Antiretroviral Therapy Success
In: Abstract Book. 9th Workshop on HIV & Hepatitis Treatment Strategies & Antiviral Drug Resistance, 94 | Poster |
Pironti, Lengauer, Kaiser, Schülter, Verheyen
[-] | 2012 | | Characterization of HIV-1 Gag Subtype C
In: Abstract Book. 9th Workshop on HIV \& Hepatitis Treatment Strategies \& Antiviral Drug Resistance, 40-41 | Poster |
Plotz, Welsch, Giron-Monzon, Friedhoff, Albrecht, Piiper, Biondi, Lengauer, Zeuzem, Raedle
[-] | 2006 | | Mutations in the MutSalpha interaction interface of MLH1 can abolish DNA mismatch repair
In: Nucleic Acids Research [34], 6574-6586 | Journal Article |
Prlic, Domingues, Lackner, Sippl
[-] | 2004 | | WILMA-automated annotation of protein sequences
In: Bioinformatics [20], 127-128 | Journal Article |
Prosperi, Altmann, Rosen-Zvi, Aharoni, Gabor, Fulop, Sonnerborg, Schulter, Struck, Ulivi, Vandamme, Vercauteren, Zazzi
[-] | 2009 | | Investigation of expert rule bases, logistic regression, and non-linear machine learning techniques for predicting response to antiretroviral treatment
In: Antiviral Therapy [14], 433-442 | Journal Article |
Prosperi, Rosen-Zvi, Altmann, Zazzi, Di Giambenedetto, Kaiser, Schülter, Struck, Sloot, van de Vijver, Vandamme, Sönnerborg
[-] | 2010 | | Antiretroviral Therapy Optimisation without Genotype Resistance Testing: A Perspective on Treatment History Based Models
In: PLoS ONE [5], e13753,1-e13753,8 | Electronic Journal Article |
Radivojac, Clark, Oron, Schnoes, Wittkop, Sokolov, Graim, Funk, Verspoor, Ben-Hur, Pandey, Yunes, Talwalkar, Repo, Souza, Piovesan, Casadio, Wang, Cheng, Fang, Gough, Koskinen, T\"{o}r\"{o}nen, Nokso-Koivisto, Holm, Cozzetto, Buchan, Bryson, Jones, Limaye, Inamdar, Datta, Manjari, Joshi, Chitale, Kihara, Lisewski, Erdin, Venner, Lichtarge, Rentzsch, Yang, Romero, Bhat, Paccanaro, Hamp, Ka\ss ner, Seemayer, Vicedo, Schaefer, Achten, Auer, Boehm, Braun, Hecht, Heron, H\"{o}nigschmid, Hopf, Kaufmann, Kiening, Krompass, Landerer, Mahlich, Roos, Bj\"{o}rne, Salakoski, Wong, Shatkay, Gatzmann, Sommer, Wass, Sternberg, Skunca, Supek, Bo\v{s}njak, Panov, D\v{z}eroski, Smuc, Kourmpetis, van Dijk, Braak, Zhou, Gong, Dong, Tian, Falda, Fontana, Lavezzo, {Di Camillo}, Toppo, Lan, Djuric, Guo, Vucetic, Bairoch, Linial, Babbitt, Brenner, Orengo, Rost, Mooney, Friedberg
[-] | 2013 | | A large-scale evaluation of computational protein function prediction
In: Nature Methods [10], 221-227 | Journal Article |
Rahnenführer
(Ed: Denison, Hansen, Holmes, Mallick, Yu)
[-] | 2003 | | Statistical Inference for Clustering Microarrays
In: Proceedings of the MSRI Workshop: Nonlinear Estimation and Classification, 323-332 | Proceedings Article |
Rahnenführer
(Ed: Schader, Gaul, Vichi)
[-] | 2003 | | Efficient Clustering Methods for Tumor Classification with Microarrays
In: Proceedings of the 26th Annual Conference of the Gesellschaft für Klassifikation, 670-679 | Proceedings Article |
Rahnenführer
[-] | 2006 | | Statistical methods for the biological interpretation of genome-wide measurements
Universität des Saarlandes | Thesis - Habilitation thesis |
Rahnenführer
[-] | 2005 | | Clustering algorithms and other exploratory methods for microarray data analysis
In: Methods of Information in Medicine [44], 444-448 | Journal Article |
Rahnenführer
[-] | 2005 | | Image analysis for cDNA microarrays
In: Methods of Information in Medicine [44], 405-407 | Journal Article |
Rahnenführer
[-] | 2003 | | On preferences of general two-sided tests with applications to Kolmogorov-Smirnov-type tests
In: Statistics & Decisions [21], 115-136 | Journal Article |
Rahnenführer
[-] | 2002 | | Hybrid clustering for microarray analysis combining intensity and shape features
In: Poster book of the European Conference on Computational Biology, Saarbrücken, Germany 2002, - | Poster |
Rahnenführer
[-] | 2002 | | Multivariate permutation tests for the k-sample problem with clustered data
In: Computational Statistics [17], 165-184 | Journal Article |
Rahnenführer, Beerenwinkel, Schulz, Hartmann, von Deimling, Wullich, Lengauer
[-] | 2005 | | Estimating cancer survival and clinical outcome based on genetic tumor progression scores
In: Bioinformatics [21], 2438-2446 | Journal Article |
Rahnenführer, Bozinov
[-] | 2004 | | Hybrid clustering for microarray image analysis combining intensity and shape features
In: BMC Bioinformatics [5], 1-11 | Journal Article |
Rahnenführer, Bozinov
[-] | 2003 | | Comparative quality analyses for hybrid clustering of microarray images
In: Proceedings of the Sventh Annual International Conference on Computational Biology, - | Poster |
Rahnenführer, Bozinov
[Bozinov] | 2002 | | Unsupervised technique for robust target separation and analysis of DNA microarray spots through adaptive pixel clustering
In: Bioinformatics [18], 747-756 | Journal Article |
Rahnenführer, Domingues, Maydt, Lengauer
[-] | 2004 | | Calculating the statistical significance of changes in pathway activity from gene expression data
In: Statistical Applications in Genetics and Molecular Biology [3], Article 16 | Electronic Journal Article |
Rahnenführer, Futschik
[-] | 2003 | | Cost-effective screening for differentially expressed genes in microarray experiments based on normal mixtures
In: Austrian Journal of Statistics [32], 225-238 | Journal Article |
Rahnenführer, Lengauer
(Ed: Lengauer)
[-] | 2007 | | Analysis of Expression Data: Classification of genes
In: Bioinformatics - From Genomes to Therapies 2. Getting at the Inner Workings: Molecular Interactions, 993-1021 | Part of a Book |
Ralser, Albrecht, Nonhoff, Lengauer, Lehrach, Krobitsch
[-] | 2005 | | An integrative approach to gain insights into the cellular function of human ataxin-2
In: Journal of Molecular Biology [346], 203-214 | Journal Article |
Ralser, Nonhoff, Albrecht, Lengauer, Wanker, Lehrach, Krobitsch
[-] | 2005 | | Ataxin-2 and huntingtin interact with endophilin-A complexes to function in plastin-associated pathways
In: Human Molecular Genetics [14], 2893-2909 | Journal Article |
Ramirez
(Ed: Gomez Merino, Silva Rojas, Pérez Rodríguez)
[-] | 2010 | | Tutorial Cytoscape
In: Bioinformática: Aplicaciones a la genómica y proteómica, 73-98 | Part of a Book |
Ramírez
(Ed: Ramírez, Balbin, Betancourt-Morales, Mora-Oberlaender, Angel-Rodriguez)
[-] | 2004 | | Evolucion de la Evolucionalidad
In: Biologos lejos del equilibrio: Nuevas metaforas evolutivas, 59-87 | Part of a Book |
Ramirez
[-] | 2012 | | Novel Approaches to the Integration and Analysis of Systems Biology
Universität des Saarlandes | Thesis - PhD thesis |
Ramírez
[-] | 2004 | | Hacia una comprension de la accion de la recombinacion genetica y la mutacion en el origen de la variacion fenotipica, mediante el analisis de la computacion evolutiva
Universidad Nacional de Colombia | Thesis - Masters thesis |
Ramírez, Albrecht
[-] | 2010 | | Finding scaffold proteins in interactomes
In: Trends in Cell Biology [20], 2-4 | Journal Article |
Ramírez, Garcia
[-] | 2000 | | GenLab: Laboratorio virtual de genetica
In: Acta Biologica Colombiana [5], 45-48 | Journal Article |
Ramírez, Lawyer, Albrecht
[-] | 2012 | | Novel search method for the discovery of functional relationships
In: Bioinformatics [28], 269-276 | Journal Article |
Ramírez, Schlicker, Assenov, Lengauer, Albrecht
[-] | 2007 | | Computational analysis of human protein interaction networks
In: Proteomics [7], 2541-2552 | Journal Article |
Ramos, Carneiro, Baumbach, Azevedo, Schneider, Silva
[-] | 2011 | | Analysis of quality raw data of second generation sequencers with Quality Assessment Software
In: BMC Research Notes [4], 130,1-130,6 | Journal Article |
Reimer
[-] | 2006 | | Docking studies to investigate the effect of correlated mutations in the HIV-Protease on the drug resistance of HIV
Universität des Saarlandes | Thesis - Bachelor thesis |
Reiss, Rebhan, Backes, Romero-Brey, Erfle, Matula, Kaderali, Poenisch, Blankenburg, Hiet, Longerich, Diehl, Ramírez, Balla, Rohr, Kaul, Bühler, Pepperkok, Lengauer, Albrecht, Eils, Schirmacher, Lohmann, Bartenschlager
[-] | 2011 | | Recruitment and activation of a lipid kinase by hepatitis C virus NS5A is essential for integrity of the membranous replication compartment
In: Cell Host & Microbe [9], 32-45 | Journal Article |
Reppas, Lawyer
(Ed: Simos, Psihoyios, Tsitouras, Anastassi)
[-] | 2012 | | Low k-shells identify bridge elements critical to disease flow in small-world networks
In: Numerical Analysis and Applied Mathematics (ICNAAM 2012), 1426-1429 | Proceedings Article |
Reuter
[-] | 2011 | | Estimating and Using the Uncertainty in the Phenotypic Resistance Assay of the Hepatitis B Virus to Improve IC-50 Prediction from Genotype
Universität des Saarlandes | Thesis - Bachelor thesis |
Reuter, Oette, Kaiser, Lengauer, Fätkenheuer, Rockstroh, Knechten, Häussinger
[-] | 2012 | | Risk factors associated with older age in treatment-naive HIV-positive patients
In: Intervirology [55], 147-153 | Journal Article |
Reuter, Oette, Wilhelm, Beggel, Kaiser, Balduin, Schweitzer, Verheyen, Adams, Lengauer, Faetkenheuer, Pfister, Haeussinger
[-] | 2011 | | Erratum to: Prevalence and characteristics of hepatitis B and C virus infections in treatment-naïve HIV-infected patients.
In: Medical Microbiology and Immunology [200], 51-51 | Journal Article |
Reuter, Oette, Wilhelm, Beggel, Kaiser, Balduin, Schweitzer, Verheyen, Adams, Lengauer, Faetkenheuer, Pfister, Haeussinger
[-] | 2011 | | Prevalence and characteristics of hepatitis B and C virus infections in treatment-naïve HIV-infected patients
In: Medical Microbiology and Immunology [200], 39-49 | Journal Article |
Rhee, Margeridon-Thermet, Nguyen, Liu, Kagan, Beggel, Verheyen, Kaiser, Shafer
[-] | 2010 | | Hepatitis B virus reverse transcriptase sequence variant database for sequence analysis and mutation discovery
In: Antiviral Research [88], 269-275 | Journal Article |
Röttger, Kalaghatgi, Sun, de Castro Soares, Azevedo, Wittkop, Baumbach
[-] | 2013 | | Density Parameter Estimation for Finding Clusters of Homologous Proteins - Tracing Actinobacterial Pathogenicity Life Styles
In: Bioinformatics [29], 215-222 | Journal Article |
Röttger, Kreutzer, Duong Vu, Wittkop, Baumbach
(Ed: Böcker, Hufsky, Scheubert, Schleicher, Schuster)
[-] | 2012 | | Online Transitivity Clustering of Biological Data with Missing Values
In: German Conference on Bioinformatics 2012 (GCB 2012), 57-68 | Electronic Proceedings Article |
Röttger, Rueckert, Taubert, Baumbach
[-] | 2012 | | How Little Do We Actually Know? - On the Size of Gene Regulatory Networks.
In: IEEE/ACM transactions on computational biology and bioinformatics [9], 1293-1300 | Journal Article |
Roomp
(Ed: Lengauer)
[-] | 2007 | | Evolution of Drug Resistance in HIV
In: Bioinformatics - From Genomes to Therapies 3. The Holy Grail: Molecular Function, 1457-1496 | Part of a Book |
Roomp, Antes, Lengauer
[-] | 2010 | | Predicting MHC class I epitopes in large datasets
In: BMC Bioinformatics [11], 90,1-90,11 | Electronic Journal Article |
Roomp, Beerenwinkel, Sing, Schülter, Büch, Sierra-Aragon, Däumer, Hoffmann, Kaiser, Lengauer, Selbig
[-] | 2006 | | Arevir: A Secure Platform for Designing Personalized Antiretroviral Therapies Against HIV
In: Lecture Notes in Computer Science [4075], 185-194 | Journal Article |
Roomp, Domingues
[-] | 2011 | | Predicting interactions between T cell receptors and MHC-peptide complexes
In: Molecular Immunology [48], 553-562 | Journal Article |
Roomp, Rand
[-] | 2009 | | Intensive blood glucose control is safe and effective in diabetic cats using home monitoring and treatment with glargine
In: Journal of feline medicine and surgery [11], 668-682 | Journal Article |
Rosen-Zvi, Altmann, Prosperi, Aharoni, Neuvirth, Sönnerborg, Schülter, Struck, Peres, Incardona, Kaiser, Zazzi, Lengauer
[-] | 2008 | | Selecting anti-HIV therapies based on a variety of genomic and clinical factors
In: Proceedings of the 16th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB 2008), i399-406 | Proceedings Article |
Rosen-Zvi, Schülter, Altmann, Sierra-Aragon, Zazzi, Sönnerborg, Oette, Lengauer, Kaiser
[-] | 2008 | | Sustaining lamivudine/emtricitabine, abacavir, zidovudine or atazanavir from a previous treatment shows a clinical benefit
In: Antiviral Therapy, A86 | Poster |
Rost, Gaasterland, Lengauer, Linial, Markel, McKay, Schneider, Horton, Kelso
[-] | 2012 | | Paving the future: finding suitable ISMB venues
In: Bioinformatics [28], 2556-2559 | Journal Article |
Ruiz, D'Afonseca, Silva, Ali, Pinto, Santos, Rocha, Lopes, Dorella, Pacheco, Costa, Turk, Seyffert, Moraes, Soares, Almeida, Castro, Abreu, Trost, Baumbach, Tauch, Schneider, McCulloch, Cerdeira, Ramos, Zerlotini, Dominitini, Resende, Coser, Oliveira, Pedrosa, Vieira, Guimaraes, Bartholomeu, Oliveira, Santos, Rabelo, Lobo, Franco, Costa, Castro, Dias, Ferro, Ortega, Paiva, Goulart, Almeida, Ferro, Carneiro, Falcao, Grynberg, Teixeira, Brommonschenkel, Oliveira, Meyer, Moore, Miyoshi, Oliveira, Azevedo
[-] | 2011 | | Evidence for Reductive Genome Evolution and Lateral Acquisition of Virulence Functions in two Corynebacterium pseudotuberculosis strains
In: PLoS One [6], e18551 | Electronic Journal Article |
Saigo, Altmann, Bogojeska, Müller, Nowozin, Lengauer
[-] | 2011 | | Learning from past treatments and their outcome improves prediction of In Vivo response to anti-HIV therapy
In: Statistical Applications in Genetics and Molecular Biology [10], 1-32 | Electronic Journal Article |
Saigo, Hattori, Kashima, Tsuda
[-] | 2010 | | Reaction graph kernels predict EC numbers of unknown enzymatic reactions in plant secondary metabolism
In: BMC Bioinformatics [11], S31,1-S31,7 | Electronic Journal Article |
Saigo, Tsuda
(Ed: Giannotti, Gunopulos)
[-] | 2008 | | Iterative Subgraph Mining for Principal Component Analysis.
In: Proceedings of the IEEE International Conference on Data Mining (ICDM2008), DM934 | Proceedings Article |
Salamat-Miller, Fang, Seidel, Assenov, Albrecht, Middaugh
[-] | 2007 | | A network-based analysis of polyanion-binding proteins utilizing human protein arrays
In: Journal of Biological Chemistry [282], 10153-10163 | Journal Article |
Salamat-Miller, Fang, Seidel, Smalter, Assenov, Albrecht, Middaugh
[-] | 2006 | | A network-based analysis of polyanion-binding proteins utilizing yeast protein arrays
In: Molecular and Cellular Proteomics [5], 2263-2278 | Journal Article |
Sander
[-] | 2008 | | Structural Descriptors for the Analysis of Protein Structure, Function, and Evolution
Universität des Saarlandes | Thesis - PhD thesis |
Sander
[-] | 2004 | | Local sequence-structure relationships in proteins
Friedrich-Alexander-Universität Erlangen-Nürnberg | Thesis - other |
Sander, Altmann, Lengauer
[-] | 2008 | | Computational analysis of covariation and interactions between HIV-1 reverse transcriptase and Integrase
In: Reviews in Antiviral Therapy, 113-114 | Poster |
Sander, Domingues, Zhu, Lengauer, Sommer
(Ed: Brazma, Miyano, Akutsu)
[-] | 2008 | | Structural descriptors of protein-protein binding sites
In: Proceedings of 6th Asia-Pacific Bioinformatics Conference, 79-88 | Proceedings Article |
Sander, Sing, Sommer, Low, Cheung, Harrigan, Lengauer, Domingues
[-] | 2007 | | Structural Descriptors of gp120 V3 Loop for the Prediction of HIV-1 Coreceptor Usage
In: PLoS Computational Biology [3], 555-564 | Journal Article |
Sander, Sommer, Lengauer
[-] | 2006 | | Local protein structure prediction using discriminative models
In: BMC Bioinformatics [7], 1-13 | Electronic Journal Article |
Santos, Santos, Baumbach, McCulloch, Oliveira, Silva, Miyoshi, Azevedo
[-] | 2011 | | A singular value decomposition approach for improved taxonomy classification of biological sequences
In: BMC Genomics [12], S11,1-S11,15 | Journal Article |
Sarrazin, Mihm, Herrmann, Welsch, Albrecht, Sarrazin, Traver, Lengauer, Zeuzem
[-] | 2005 | | Clinical significance of in vitro replication-enhancing mutations of the hepatitis C virus (HCV) replicon in patients with chronic HCV infection
In: The Journal of Infectious Diseases [192], 1710-1719 | Journal Article |
Schäfer, Lengauer
[Schäfer] | 2001 | | Automated Layout Generation and Wiring Area Estimation for 3D Electronic Modules
In: ASME Journal of Machanical Design [123], 330-336 | Journal Article |
Schelhorn
[-] | 2007 | | Prediction of Domain and Motif Interactions from Protein Networks
Universität des Saarlandes | Thesis - Masters thesis |
Schelhorn, Lengauer, Albrecht
[-] | 2008 | | An integrative approach for predicting interactions of protein regions
In: Bioinformatics [24], i35-i41 | Journal Article |
Schelhorn, Mestre, Zotenko, Albrecht
[-] | 2011 | | Inferring physical protein contacts from large-scale purification data of protein complexes
In: Molecular & Cellular Proteomics [10], M110.004929,1-M110.004929,15 | Electronic Journal Article |
Scheller, Resa-Infante, de la Luna, Galao, Albrecht, Kaestner, Lipp, Lengauer, Meyerhans, Díez
[-] | 2007 | | Identification of PatL1, a human homolog to yeast P body component Pat1
In: Biochimica et Biophysica Acta - Molecular Cell Research [1773], 1786-1792 | Journal Article |
Schlicker
[-] | 2010 | | Ontology-based Similarity Measures and their Application in Bioinformatics
Universität des Saarlandes | Thesis - PhD thesis |
Schlicker
[-] | 2005 | | A Global Approach to Comparative Genomics: Comparison of Functional Annotation over the Taxonomic Tree
Universität des Saarlandes | Thesis - Masters thesis |
Schlicker
[-] | 2004 | | Automated Differential Analysis of Proteomes
Universität des Saarlandes | Thesis - Bachelor thesis |
Schlicker, Albrecht
[-] | 2010 | | FunSimMat update: new features for exploring functional similarity
In: Nucleic Acids Research [38], D244-D248 | Journal Article |
Schlicker, Albrecht
[-] | 2008 | | FunSimMat: a comprehensive functional similarity database
In: Nucleic Acids Research [36], D434-D439 | Journal Article |
Schlicker, Domingues, Rahnenführer, Lengauer
[-] | 2006 | | A new measure for functional similarity of gene products based on Gene Ontology
In: BMC Bioinformatics [7], 1-16 | Electronic Journal Article |
Schlicker, Huthmacher, Ramírez, Lengauer, Albrecht
(Ed: Huson, Kohlbacher, Lupas, Nieselt, Zell)
[-] | 2006 | | Functional evaluation of domain-domain interactions and human protein interaction networks
In: German Conference on Bioinformatics (GCB 2006), 115-126 | Proceedings Article |
Schlicker, Huthmacher, Ramírez, Lengauer, Albrecht
[-] | 2007 | | Functional evaluation of domain-domain interactions and human protein interaction networks
In: Bioinformatics [23], 859-865 | Journal Article |
Schlicker, Lengauer, Albrecht
[-] | 2010 | | Improving disease gene prioritization using the semantic similarity of Gene Ontology terms
In: Bioinformatics [26], i561-i567 | Journal Article |
Schlicker, Rahnenführer, Albrecht, Lengauer, Domingues
[-] | 2007 | | GOTax: investigating biological processes and biochemical activities along the taxonomic tree
In: Genome Biology [8], R33.1-10 | Electronic Journal Article |
Schreiber, Rosenstiel, Albrecht, Hampe, Krawczak
[-] | 2005 | | Genetics of Crohn disease, an archetypal inflammatory barrier disease
In: Nature Reviews Genetics [6], 376-388 | Journal Article |
Schüffler
[-] | 2008 | | MethMarker – A toolkit for design, optimization and validation of DNA methylation biomarkers for cancer diagnosis and therapy optimization
Universität des Saarlandes | Thesis - Masters thesis |
Schüffler, Mikeska, Waha, Lengauer, Bock
[-] | 2009 | | MethMarker: User-friendly design and optimization of gene-specific DNA methylation assays
In: Genome Biology [10], R105:1-R105:10 | Journal Article |
Schuelter, Lübcke, Jensen, Zazzi, Sönnerborg, Lengauer, Incardona, Camacho, Schmit, Clotet, Kaiser, Pironti
(Ed: Kippax, Salif Sow, Wainberg, Heidari)
[-] | 2012 | | Etravirine in protease inhibitor-free antiretroviral combination therapies
In: Journal of the International AIDS Society, 155-156 | Poster |
Schülter, Oette, Balduin, Reuter, Rockstroh, Fätkenheuer, Esser, Lengauer, Agacfidan, Pfister, Kaiser, Akgul
[-] | 2011 | | HIV prevalence and route of transmission in Turkish immigrants
living in North-Rhine Westphalia, Germany
In: Medical Microbiology and Immunology [200], 219-223 | Journal Article |
Schulz, Alexa, Jung, Hader, Hoffmann, Yamanaka, Fritzsche, Wlazlinski, Müller, Lengauer, Engers, Florl, Wullich, Rahnenführer
[-] | 2007 | | Factor interaction analysis for chromosome 8 and DNA methylation alterations highlights innate immune response suppression and cytoskeletal changes in prostate cancer
In: Molecular Cancer [6], 1-16 | Journal Article |
Seclen, Soriano, González, Gómez, Thielen, Poveda
[-] | 2011 | | High Concordance between the Position-Specific Scoring Matrix and Geno2pheno Algorithms for Genotypic Interpretation of HIV-1 Tropism: V3 Length as the Major Cause of Disagreement
In: Journal of Clinical Microbiology [49], 3380-3382 | Journal Article |
Setty
[-] | 2012 | | Multi-scale computational modeling of developmental biology
In: Bioinformatics [28], 2022-2028 | Journal Article |
Shimakami, Welsch, Yamane, McGivern, Yi, Zeuzem, Lemon
[-] | 2011 | | Protease Inhibitor-Resistant Hepatitis C Virus Mutants With Reduced Fitness From Impaired Production of Infectious Virus
In: Gastroenterology [140], 667-675 | Journal Article |
Sichtig, Sierra, Kaiser, Däumer, Reuter, Schülter, Altmann, Fätkenheuer, Dittmer, Pfister, Esser
[-] | 2009 | | Evolution of raltegravir resistance during therapy
In: Journal of antimicrobial chemotherapy [64], 25-32 | Journal Article |
Sierra, Dzbowski, Pironti, Gueney, Thielen, Reuter, Esser, Fätkenheuer, Lengauer, Hider, Hoffmann, Pfister, Jensen, Kaiser
(Ed: Kippax, Salif Sow, Wainberg, Heidari)
[-] | 2012 | | Optimisation of baseline genotypic testing for safe and efficient maraviroc administration
In: Journal of the International AIDS Society, 101-102 | Poster |
Sierra, Kaiser, Lübke, Thielen, Schuelter, Heger, Däumer, Reuter, Esser, Fätkenheuer, Pfister, Oette, Lengauer
[-] | 2011 | | Prediction of HIV-1 coreceptor usage (tropism) by sequence analysis using a genotypic approach
In: Journal of Visualized Experiments [58], e3264,1-e3264,9 | Electronic Journal Article |
Sierra, Kaiser, Thielen, Lengauer
[-] | 2007 | | Genotypic coreceptor analysis.
In: European Journal of Medical Research [12], 453-462 | Journal Article |
Sierra, Kaiser, Thielen, Sander, Lengauer
(Ed: Jäger)
[-] | 2008 | | Genotypic Analysis of HIV Co-Receptor Usage
In: Entry Inhibitoren - Neue Formen der HIV-Therapie, 31-39 | Part of a Book |
Simmer, Brinkman, Assenov, Matarese, Kaan, Sabatino, Villanueva, Huertas, Esteller, Lengauer, Bock, Colantuoni, Altucci, Stunnenberg
[-] | 2012 | | Comparative genome-wide DNA methylation analysis of colorectal tumor and matched normal tissues
In: Epigenetics [7], 1355-1367 | Journal Article |
Sing
[-] | 2008 | | Model-Based Anti HIV Therapy
Universität des Saarlandes | Thesis - PhD thesis |
Sing
[-] | 2004 | | Learning localized rule mixtures by maximizing the area under the ROC curve, with an application to the prediction of HIV-1 coreceptor usage
Universität Freiburg | Thesis - Masters thesis |
Sing, Beerenwinkel
(Ed: Schölkopf, Platt, Hoffman)
[-] | 2007 | | Mutagenetic tree Fisher kernel improves prediction of HIV drug resistance from viral genotype
In: Advances in Neural Information Processing Systems 19, 1-9 | Proceedings Article |
Sing, Beerenwinkel, Kaiser, Hoffmann, Däumer, Lengauer
[-] | 2005 | | Geno2pheno[coreceptor]: a tool for predicting coreceptor usage from genotype and for monitoring coreceptor-associated sequence alterations
In: Proceedings of the 3rd European HIV Drug Resistance Workshop, - | Poster |
Sing, Beerenwinkel, Lengauer
(Ed: Hernández-Orallo, Ferri, Lachiche, Falch)
[-] | 2004 | | Learning mixtures of localized rules by maximizing the area under the ROC curve
In: ROCAI-2004: 1st International Workshop on ROC Analysis in Artificial Intelligence, 89-96 | Proceedings Article |
Sing, Low, Beerenwinkel, Sander, Cheung, Domingues, Büch, Däumer, Kaiser, Lengauer, Harrigan
[-] | 2007 | | Predicting HIV coreceptor usage on the basis of genetic and clinical covariates
In: Antiviral Therapy [12], 1097-1106 | Journal Article |
Sing, Sander, Beerenwinkel, Lengauer
[-] | 2006 | | ROCR: Visualizing classifier performance in R
In: Bioinformatics [21], 3940-3941 | Journal Article |
Sing, Svicher, Beerenwinkel, Ceccherini-Silberstein, Däumer, Kaiser, Walter, Korn, Hoffmann, Oette, Rockstroh, Fätkenheuer, Perno, Lengauer
(Ed: Jorge, Torgo, Brazdil, Camacho, Gama)
[-] | 2005 | | Characterization of novel HIV Drug Resistance Mutations using clustering, multidimensional scaling and SVM-based feature ranking
In: Knowledge Discovery in Databases: PKDD 2005., 285-296 | Proceedings Article |
Siu
[-] | 2005 | | Computational prediction of MHC-peptide interactions
Universität des Saarlandes | Thesis - Masters thesis |
Skrabal, Low, Dong, Sing, Cheung, Mammano, Harrigan
[-] | 2007 | | Determining human immunodeficiency virus coreceptor use in a clinical setting: Degree of correlation between two phenotypic assays and a bioinformatic model
In: Journal of Clinical Microbiology [45], 279-284 | Journal Article |
Soares, Abreu, Ramos, Cerdeira, Silva, Baumbach, Trost, Tauch, Hirata, Mattos-Guaraldi, Miyoshi, Azevedo
[-] | 2012 | | PIPS: Pathogenicity Island Prediction Software
In: PLoS One [7], e30848,1-e30848,10 | Electronic Journal Article |
Söderhäll, Marenholz, Kerscher, Rüschendorf, Esparza-Gordillo, Worm, Gruber, Mayr, Albrecht, Rohde, Schulz, Wahn, Hubner, Lee
[-] | 2007 | | Variants in a novel epidermal collagen gene (COL29A1) are associated with atopic dermatitis
In: PLoS Biology [5], e242.1952-1961 | Journal Article |
Sommer
(Ed: Lengauer)
[-] | 2007 | | Protein Fold Recognition Based on Distant Homologs
In: Bioinformatics - From Genomes to Therapies 1. The Building Blocks: Molecular Sequences and Structures, 351-388 | Part of a Book |
Sommer
[-] | 2009 | | From Protein Structure to Function
Universität des Saarlandes | Thesis - Habilitation thesis |
Sommer, Müller, Domingues, Sander, Weickert, Lengauer
[-] | 2007 | | Moment invariants as shape recognition technique for comparing protein binding sites
In: Bioinformatics [23], 3139-3146 | Journal Article |
Sommer, Rahnenführer, Domingues, de Lichtenberg, Lengauer
[-] | 2004 | | Predicting Protein Structure Classes from Function Predictions
In: Bioinformatics [20], 770-776 | Journal Article |
Sommer, Toppo, Sander, Lengauer, Tosatto
[-] | 2006 | | Improving the quality of protein structure models by selecting from alignment alternatives
In: BMC Bioinformatics [7], 1-11 | Electronic Journal Article |
Sommer, Zien, Öhsen von, Zimmer, Lengauer
[Zien, Öhsen von, Zimmer] | 2002 | | Confidence measures for protein fold recognition
In: Bioinformatics [18], 802-812 | Journal Article |
Sos, Michel, Zander, Weiss, Frommolt, Pfeifer, Li, Ullrich, Koker, Fischer, Shimamura, Rauh, Mermel, Fischer, Stückrath, Heynck, Beroukhim, Lin, Winckler, Shah, LaFramboise, Moriarty, Hanna, Tolosi, Rahnenführer, Verhaak, Chiang, Getz, Hellmich, Wolf, Girard, Peyton, Weir, Chen, Greulich, Barretina, Shapiro, Garraway, Gazdar, Minna, Meyerson, Wong, Thomas
[-] | 2009 | | Predicting drug susceptibility of non-small cell lung cancers based on genetic lesions
In: Journal of Clinical Investigation [119], 1727-1740 | Journal Article |
Speicher
[-] | 2012 | | Towards the identification of cancer subtypes by integrative clustering of molecular data
Universität des Saarlandes | Thesis - Masters thesis |
Speicher
[-] | 2010 | | Network analysis of viral host factors
Universität des Saarlandes | Thesis - Bachelor thesis |
Steffen
[-] | 2008 | | Computational Approaches in Supramolecular Chemistry with a special Focus on Virtual Screening
Universität des Saarlandes | Thesis - PhD thesis |
Steffen, Kämper, Lengauer
(Ed: Turner)
[-] | 2006 | | Virtual screening for guest molecules of a biosensor
In: Biosensors 2006: The ninth world congress on biosensors, O66 | Proceedings Article |
Steffen, Kämper, Lengauer
(Ed: Turner)
[-] | 2005 | | FlexR - A new tool for predicting the structure of synthetic host-guest complexes
In: Synthetic Receptors 2005: Second World Congress on Synthetic Receptors, O7 | Proceedings Article |
Steffen, Kämper, Lengauer
[-] | 2006 | | Flexible Docking of Ligands into Synthetic Receptors Using a Two-Sided Incremental Construction Algorithm
In: Journal of Chemical Information and Modeling [46], 1695-1703 | Journal Article |
Steffen, Kämper, Lengauer
[-] | 2004 | | Development of a new tool for predicting the structure of host-guest complexes
In: Proceedings of the 2nd Summer School Medicinal Chemistry Regensburg 2004, 83 | Poster |
Steffen, Kämper, Lengauer
[-] | 2004 | | FlexR - Predicting the structure of host-guest complexes
In: Proceedings of the Annual Meeting of the German Pharmaceutical Society - Joint Meeting 2004 (DPhG 2004), 130 | Poster |
Steffen, Karasz, Thiele, Lengauer, Kämper, Wenz, Apostolakis
[-] | 2007 | | Combined similarity and QSPR virtual screening for guest molecules of $\beta$-cyclodextrin
In: New Journal of Chemistry [31], 1941-1949 | Journal Article |
Steffen, Thiele, Tietze, Strassnig, Kämper, Lengauer, Wenz, Apostolakis
[-] | 2007 | | Improved cyclodextrin-based receptors for camptothecin by inverse virtual screening
In: Chemistry [13], 6801-6809 | Journal Article |
Stöckel
[-] | 2010 | | History Based HIV Therapy Outcome Prediction
Universität des Saarlandes | Thesis - Masters thesis |
Stöckel
[-] | 2008 | | Protein Surface Remeshing and Characterisation Using Morse-Smale Complexes
Universität des Saarlandes | Thesis - Bachelor thesis |
Stohr, Roomp, Felbor, Weber
[Stohr, Felbor, Weber] | 1995 | | Genomic organization of the human tissue inhibitor of metalloproteinases-3 (TIMP3)
In: Genome Research [5], 483-7 | Journal Article |
Stoll, Corneliussen, Costello, Waetzig, Mellgard, Koch, Rosenstiel, Albrecht, Croucher, Seegert, Nikolaus, Hampe, Lengauer, Pierrou, Foelsch, Mathew, Lagerstrom-Fermer, Schreiber
[-] | 2004 | | Genetic variation in DLG5 is associated with inflammatory bowel disease
In: Nature Genetics [36], 376-380 | Journal Article |
Susser, Welsch, Wang, Zettler, Domingues, Karey, Hughes, Ralston, Tong, Herrmann, Zeuzem, Sarrazin
[-] | 2009 | | Characterization of resistance to the protease inhibitor boceprevir in hepatitis C virus-infected patients.
In: Hepatology [50], 1709-1718 | Journal Article |
Svichera, Centoa, Salpinia, Mercurioa, Fraune, Beggel, Hanc, Gorid, Wittkope, Bertolif, Michelig, Gubertinig, Longoh, Romanoh, Viscah, Gallinaroi, Marinoj, Mazzottaj, De Sanctisi, Fleurye, Trimoulete, Angelicoa, Cappielloh, Zhangc, Verheyenb, Ceccherini-Silbersteina, Pernoa
[-] | 2011 | | Role of hepatitis B virus genetic barrier in drug-resistance and immune-escape development
In: Digestive and Liver Disease [43], 975–983 | Journal Article |
Svicher, Ceccherini-Silberstein, Sing, Santoro, Gori, Beerenwinkel, Gago, D'Arrigo, Bellocchi, Giannella, Bertoli, D'Arminio Monforte, Antinori, Perno
[-] | 2005 | | Additional Mutations in HIV-1 Reverse Transcriptase are Involved in the Highly Ordered Regulation of NRTI Resistance
In: Proceedings of the 3rd European HIV Drug Resistance Workshop, - | Proceedings Article |
Svicher, Ceccherini-Silberstein, Sing, Santoro, Gori, Beerenwinkel, Gago, D'Arrigo, Bellochi, Giannella, Bertoli, D'Arminio Monforte, Antinori, Perno
[-] | 2005 | | A highly ordered network of HIV-1 RT mutations regulates the continuous escape from antiviral drugs
In: International Workshop in HIV Dynamics and Evolution, - | Proceedings Article |
Svicher, Cento, Salpini, Mercurio, Fraune, Beggel, Han, Gori, Wittkop, Bertoli, Micheli, Gubertini, Longo, Romano, Visca, Gallinaro, Marino, Mazzotta, De Sanctis, Fleury, Trimoulet, Angelico, Cappiello, Zhang, Verheyen, Ceccherini-Silberstein, Perno
[-] | 2011 | | Role of hepatitis B virus genetic barrier in drug-resistance and immune-escape development
In: Digestive and Liver Disease [43], 975-983 | Journal Article |
Svicher, Sing, Santoro, Forbici, Rodriguez- Barrios, Bertoli, Beerenwinkel, Bellocchi, Gago, d´Arminio Monforte, Antinori, Lengauer, Ceccherini-Silberstein, Perno
[-] | 2006 | | Involvement of novel HIV-1 reverse transcriptase mutations in the regulation of resistance to nucleoside inhibitors
In: Journal of Virology [80], 7186-7198 | Journal Article |
Swenson, Boehme, Thielen, McGovern, Harrigan
[-] | 2010 | | Genotypic determination of HIV-1 tropism in the clinical setting
In: HIV Therapy [4], 293-303 | Journal Article |
Swenson, Moores, Low, Thielen, Dong, Woods, Jensen, Wynhoven, Chan, Glascock, Harrigan
[-] | 2010 | | Improved detection of CXCR4-using HIV by V3 genotyping: application of population-based and "deep" sequencing to plasma RNA and proviral DNA
In: Journal of Acquired Immune Deficiency Syndromes [54], 506-510 | Journal Article |
Swenson, Mo, Dong, Zhong, Woods, Jensen, Thielen, Chapman, Lewis, James, Heera, Valdez, Harrigan
[-] | 2011 | | Deep Sequencing to Infer HIV-1 Co-Receptor Usage: Application to Three Clinical Trials of Maraviroc in Treatment-Experienced Patients
In: The Journal of Infectious Diseases [203], 237-245 | Journal Article |
Swenson, Mo, Dong, Zhong, Woods, Thielen, Jensen, Knapp, Chapman, Lewis, James, Heera, Valdez, Harrigan
[-] | 2011 | | Deep V3 sequencing for HIV type 1 tropism in treatment-naive patients: a reanalysis of the MERIT trial of maraviroc.
In: Clinical Infectious Diseases [53], 732-742 | Journal Article |
Takken, Albrecht, Tameling
[-] | 2006 | | Resistance proteins: molecular switches of plant defence
In: Current Opinion in Plant Biology [9], 383-390 | Journal Article |
Talwar
[-] | 2008 | | Development of Computational Methods for Metabolic Network Analysis based on Metabolomics Data
Universität des Saarlandes | Thesis - PhD thesis |
Talwar, Lengauer, Rahnenführer, Heinzle, Velagapudi, Wittmann
[-] | 2005 | | Towards computational analysis of metabolic profiling data for protein function prediction.
In: Proceedings of the Yeast Systems Biology, 6th International Conference on Systems Biology (ICSB 2005), 1 | Poster |
Talwar, Lengauer, Rahnenführer, Velagapudi, Wittmann, Heinzle
[-] | 2004 | | Computational Methods For Metabolite Screening
In: Proceedings of the 12th International Conference on Intelligent Systems for Molecular Biology + 3rd European Conference on Computational Biology (ISMB/ECCB 2004), 1 | Poster |
Talwar, Lengauer, Rahnenführer, Velagapudi, Wittmann, Heinzle
[-] | 2004 | | Computational Methods For Metabolite Screening
In: Proceedings of the 5th International Conference on Systems Biology (ICSB 2004), 1 | Poster |
Talwar, Lengauer, Rahnenführer, Wittmann, Velagapudi, Heinzle
[-] | 2005 | | Computational Methods for Protein Function Prediction using Metabolomics Data
In: Proceedings of International Workshop on Systems Biology 2005, 1 | Poster |
Talwar, Lengauer, Wittmann, Mangadu, Heinzle
[-] | 2003 | | Towards cellular function through metabolite screening
In: Proceedings of the 3rd Annual Conference on Metabolic Profiling: Pathways in Discovery, 7 | Proceedings Article |
Talwar, Lengauer, Wittmann, Velagapudi, Heinzle
[-] | 2006 | | Development of Computational Methods for Analysis of Metabolic Profiling Data
In: Proceedings of International Conference on Systems Biology (ICSB 2006), Japan, 42-42 | Proceedings Article |
Talwar, Wittmann, Lengauer, Heinzle
[-] | 2003 | | Software tool for automated processing of 13C labeling data from mass spectrometry data
In: BioTechniques [35], 1214-1215 | Journal Article |
Tameling, Vossen, Albrecht, Lengauer, Berden, Haring, Cornelissen, Takken
[-] | 2006 | | Mutations in the NB-ARC domain of I-2 that impair ATP hydrolysis cause autoactivation
In: Plant Physiology [140], 1233-1245 | Journal Article |
Thielen
[-] | 2011 | | Genotypic Analysis of HIV-1 Coreceptor Usage
Universität des Saarlandes | Thesis - PhD thesis |
Thielen
[-] | 2006 | | Prediction of linear B-cell epitopes and MHC class II binding peptides
Eberhardt-Karls-Universität Tübingen | Thesis - Masters thesis |
Thielen, Altmann, Bogojeska, Kaiser, Lengauer
[-] | 2009 | | Estimating evolutionary pathways to 7CXCR4 usage from cross-sectional data
In: Abstracts presented at the XVIII International HIV Drug Resistance Workshop : Basic Principles & Clinical Implications, A16-A16 | Poster |
Thielen, Harrigan, Low, Moores, Altmann, Bozek, Heger, Sichtig, Kaiser, Lengauer
[-] | 2008 | | Improved genotypic prediction of HIV-1 coreceptor usage by incorporating V2 loop sequence variation
In: Antiviral Therapy, A100 | Poster |
Thielen, Kaiser, Lengauer
[-] | 2008 | | Improving HIV-1 coreceptor usage prediction from genotype with regions outside of V3
In: Reviews in Antiviral Therapy, 81-82 | Poster |
Thielen, Lengauer
[-] | 2012 | | Geno2pheno[454]: A Web Server for the Prediction of HIV-1 Coreceptor Usage from Next-Generation Sequencing Data
In: Intervirology [55], 113-117 | Journal Article |
Thielen, Lengauer, Harrigan, Swenson, Dong, McGovern, Lewis, James, Heera, Valdez
[-] | 2010 | | Mutations within GP41 are correlated with coreceptor tropism but do not substantially improve coreceptor usage prediction
In: Reviews in Antiviral Therapy & Infectious Diseases, 47-47 | Poster |
Thielen, Lengauer, Swenson, Dong, McGovern, Lewis, James, Heera, Valdez, Harrigan
[-] | 2011 | | Mutations in gp41 are correlated with coreceptor tropism but do not improve prediction methods substantially
In: Antiviral Therapy [16], 319-328 | Journal Article |
Thielen, Sichtig, Braun, Däumer, Walter, Noah, Wolf, Müller, Stürmer, Lengauer, Kaiser, Obermeier
[-] | 2009 | | Performance of genotypic coreceptor measurement using geno2pheno[coreceptor] in B- and non-B HIV subtypes in a large cohort of therapy-experienced patients in Germany
In: Reviews in Antiviral Therapy, 99-99 | Poster |
Thielen, Sichtig, Kaiser, Lam, Harrigan, Lengauer
[-] | 2010 | | Improved prediction of HIV-1 coreceptor usage with sequence information from the second hypervariable loop of gp120
In: Journal of Infectious Diseases [202], 1435-1443 | Journal Article |
Thornton, Bourne, Gilbert, Goble, Goldman, Gribskov, Hide, Higgins, Kanehisa, Lengauer, Linial, Myers, Quackenbush, Rebholz-Schuhmann, Rost, Sowdhamini, Valencia, Vingron, Xu (ed.)
(Ed: Thornton, Bourne, Gilbert, Goble, Goldman, Gribskov, Hide, Higgins, Kanehisa, Lengauer, Linial, Myers, Quackenbush, Rebholz-Schuhmann, Rost, Sowdhamini, Valencia, Vingron, Xu)
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Tolosi
[-] | 2012 | | Finding Regions of Aberrant DNA Copy Number Associated With Tumor Phenotype
Universität des Saarlandes | Thesis - PhD thesis |
Tolosi
[-] | 2006 | | Analysis of Array CGH Data for the Estimation of Genetic Tumor Progression
Universität des Saarlandes | Thesis - Masters thesis |
Tolosi, Lengauer
[-] | 2011 | | Classification with correlated features: unreliability of feature ranking and solutions
In: Bioinformatics [27], 1986-1994 | Journal Article |
Torda, Lengauer
[-] | 2006 | | Editorial: Selection of papers of the German Conference of Bioinformatics (GCB) 2005
In: Bioinformatics [22], 1 | Journal Article |
Trajkovski
[-] | 2004 | | Analysis of protein binding pocket flexibility
Universität des Saarlandes | Thesis - Masters thesis |
Tress, Martelli, Frankish, Reeves, Wesselink, Yeats, Ólason, Albrecht, Hegyi, Giorgetti, Raimondo, Lagarde, Laskowski, López, Sadowski, Watson, Fariselli, Rossi, Nagy, Kai, Størling, Orsini, Assenov, Blankenburg, Huthmacher, Ramírez, Schlicker, Denoued, Jones, Kerrien, Orchard, Antonarakis, Reymond, Birney, Brunak, Casadio, Guigo, Harrow, Hermjakob, Jones, Lengauer, Orengo, Patthy, Thornton, Tramontano, Valencia
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In: Proceedings of the National Academy of Sciences [104], 5495-5500 | Journal Article |
Trignetti, Sing, Svicher, Santoro, Forbici, D'Arrigo, Bellocchi, Santoro, Marconi, Zaccarelli, Trotta, Bellagamba, Narciso, Antinori, Lengauer, Perno, Ceccherini-Silberstein
[-] | 2009 | | Dynamics of NRTI resistance mutations during therapy interruption
In: AIDS Research and Human Retroviruses [25], 57-64 | Journal Article |
Ulmschneider, Mueller-Vieira, Klein, Antes, Lengauer, Hartmann
[-] | 2005 | | Synthesis and Evaluation of Pyridylmethylene-tetrahydronaphthalenes and -indanes: Potent and Selective Inhibitors of Aldosterone Synthase (CYP11B2)
In: Journal of Medicinal Chemistry [48], 4489-4490 | Journal Article |
Ulmschneider, Mueller-Vieira, Mitrenga, Hartmann, Oberwinkler-Marchais, Klein, Bureik, Bernhardt, Antes, Lengauer
[-] | 2005 | | Synthesis and Evaluation of Imidazolylmethylenetetrahydronaphthalenes and Imidazolylmethyleneindanes: Potent Inhibitors of Aldosterone Synthase
In: Journal of Medicinal Chemistry [48], 1796-1805 | Journal Article |
Valentonyte, Hampe, Huse, Rosenstiel, Albrecht, Stenzel, Nagy, Gaede, Franke, Haesler, Koch, Lengauer, Seegert, Reiling, Ehlers, Schwinger, Platzer, Krawczak, Müller-Quernheim, Schürmann, Schreiber
[-] | 2005 | | Sarcoidosis is associated with a truncating splice site mutation in BTNL2
In: Nature Genetics [37], 357-364 | Journal Article |
Van Duist, Albrecht, Podswiadek, Giachino, Lengauer, Punzi, De Marchi
[-] | 2005 | | A new CARD15 mutation in Blau syndrome
In: European Journal of Human Genetics [13], 742-747 | Journal Article |
Van Ooijen, Mayr, Albrecht, Cornelissen, Takken
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In: Molecular Plant [1], 401-410 | Journal Article |
Van Ooijen, Mayr, Kasiem, Albrecht, Cornelissen, Takken
[-] | 2008 | | Structure-function analysis of the NB-ARC domain of plant disease resistance proteins
In: Journal of Experimental Botany [59], 1383-1397 | Journal Article |
Velagapudi, Wittmann, Lengauer, Talwar, Heinzle
[-] | 2006 | | Metabolic high- content screening of Saccharomyces cerevisiae reveals superior performance of single gene deletion strains
In: Process Biochemistry [41], 2170-2179 | Journal Article |
Verheyen, Altmann, Knops, Schülter, Sichtig, Reuter, Fätkenheuer, Pfister, Kaiser
[-] | 2008 | | Relevance of HIV gag cleavage site mutations in failures of protease inhibitor therapies
In: Antiviral Therapy, A53 | Poster |
Verheyen, Litau, Sing, Däumer, Balduin, Oette, Fätkenheuer, Rockstroh, Schuldenzucker, Hoffmann, Pfister, Kaiser
[-] | 2006 | | Compensatory mutations at the HIV cleavage sites p7/p1 and p1/p6-gag in therapy-naive and therapy-experienced patients
In: Antiviral Therapy [11], 879-887 | Journal Article |
Voets, Antes, Scherer, Mueller-Vieira, Biemel, Barrassin, Marchais-Oberwinkler, Hartmann
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In: Journal of Medicinal Chemistry [48], 6632-6642 | Journal Article |
Voets, Antes, Scherer, Müller-Vieira, Biemel, Marchais-Oberwinkler, Hartmann
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In: Journal of Medicinal Chemistry [49], 2222-2231 | Journal Article |
Volkamer
[-] | 2007 | | Automated generation of pharmacophore type constraints to improve FlexX docking
Universität des Saarlandes | Thesis - Masters thesis |
Volkamer
[-] | 2005 | | Implementation of a method to filter
out compounds with toxic, reactive
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Universität des Saarlandes | Thesis - Bachelor thesis |
von Öhsen, Sommer, Zimmer
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In: Pacific Symposium on Biocomputing, PSB 2003, 252-263 | Proceedings Article |
Watson, Thornton, Tress, Lopez, Valencia, Redfern, Orengo, Sommer, Domingues
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[-] | 2008 | | Structure to function
In: Modern Genome Annotation, 239-262 | Part of a Book |
Weimann
[-] | 2011 | | Functional Profiling in Metagenomics
Universität des Saarlandes | Thesis - Masters thesis |
Weimann
[-] | 2009 | | Using multidimensional Scaling for visualizing similarities of proteins
Universität des Saarlandes | Thesis - Bachelor thesis |
Weinhold
[-] | 2006 | | Inference of Protein Function based on Functionally Conserved Regions in Sequence and Structure Space
Universität des Saarlandes | Thesis - Masters thesis |
Weinhold, Sander, Domingues, Lengauer, Sommer
[-] | 2008 | | Local function conservation in sequence and structure space
In: PLoS Computational Biology [4], e1000105 | Journal Article |
Weiss
[-] | 2005 | | Generating Frequency Profiles from Multiple
Structure Alignments
Universität des Saarlandes | Thesis - Bachelor thesis |
Weisser
[-] | 2007 | | Estimating the local variance of protein structure models
Universität des Saarlandes | Thesis - Masters thesis |
Weisser, Altmann, Sierra, Incardona, Struck, Sönnerborg, Kaiser, Zazzi, Tschochner, Walter, Lengauer
[-] | 2010 | | Only Slight Impact of Predicted Replicative Capacity for Therapy Response Prediction
In: PLoSOne [5], e9044,1-e9044,10 | Electronic Journal Article |
Welker, Hofmann, Welsch, von Wagner, Herrmann, Lengauer, Zeuzem, Sarrazin
[-] | 2007 | | Correlation nonstructural (NS)4B amino acid variations with initial viral kinetics during interferon-alpha-based therapy in HCV-1b-infected patients
In: Journal of Viral Hepatitis [14], 338-349 | Journal Article |
Welker, Welsch, Meyer, Antes, Albrecht, Forestier, Kronenberger, Lengauer, Piiper, Zeuzem, Sarrazin
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In: Protein Science [19], 1327-1336 | Journal Article |
Welker, Welsch, Ochs, Hofmann, Herrmann, Piiper, Hartmann, Zeuzem, Sarrazin, Kronenberger
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In: Journal of Viral Hepatitis [18], 181-192 | Journal Article |
Wellington, Yang, Zhou, Clee, Tan, Hirano, Zwarts, Kwok, Gelfer, Marcil, Newman, Roomp, Singaraja, Collins, Zhang, Groen, Hovingh, Brownlie, Tafuri, Genest, Kastelein, Hayden
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In: Journal of Lipid Research [43], 1939-1949 | Journal Article |
Welsch, Albrecht, Maydt, Herrmann, Welker, Sarrazin, Scheidig, Lengauer, Zeuzem
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In: Journal of Molecular Graphics and Modeling [26], 546-557 | Journal Article |
Welsch, Domingues, Susser, Antes, Hartmann, Mayr, Schlicker, Sarrazin, Albrecht, Zeuzem, Lengauer
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In: Genome Biology [9], R16 | Journal Article |
Welsch, Schweizer, Shimakami, Domingues, Kim, Lemon, Antes
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In: Antimicrobial Agents and Chemotherapy [56], 1907-1915 | Journal Article |
Welsch, Shimakami, Hartmann, Yang, Domingues, Lengauer, Zeuzem, Lemon
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In: Gastroenterology [142], 654-663 | Journal Article |
Wemmert, Ketter, Rahnenführer, Beerenwinkel, Strowitzki, Feiden, Hartmann, Lengauer, Stockhammer, Zang, Meese, Steudel, von Deimling, Urbschat
[-] | 2005 | | Patients with high grade gliomas harboring delections of chromosomes 9p and 10q benefit from temozolomide treatment
In: Neoplasia [7], 883-893 | Journal Article |
Wichard, Ogorzalek, Merkwirth, Bröcker
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In: Proceedings of the 8th IEEE International Workshop on Cellular Neural Networks and their Applications (CNNA 2004), 459-464 | Proceedings Article |
Wittkop, Emig, Lange, Rahmann, Albrecht, Morris, Böcker, Stoye, Baumbach
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In: Nature Methods [7], 419-420 | Journal Article |
Wittkop, Emig, Truss, Albrecht, Böcker, Baumbach
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In: Nature Protocols [6], 285-295 | Journal Article |
Wittkop, Rahmann, Baumbach
[-] | 2010 | | Efficient Online Transcription Factor Binding Site Adjustment by Integrating Transitive Graph Projection with MoRAine 2.0
In: Special Issue: 6th International Symposium on Integrative Bioinformatics, 117,1-117,11 | Electronic Proceedings Article |
Wittkop, Rahmann, Roettger, Boecker, Baumbach
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In: Internet Mathematics [7], 255-273 | Journal Article |
Wohlers, Domingues, Klau
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In: Bioinformatics [26], 2273-2280 | Journal Article |
Wolf, Walter, Beerenwinkel, Keulen, Kaiser, Hoffmann, Lengauer, Selbig, Vandamme, Korn, Schmidt
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In: Antimicrobial Agents and Chemotherapy [47], 3478-3484 | Journal Article |
Xi, Bock, Müller, Sun, Meissner, Li
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In: Bioinformatics [28], 430-432 | Journal Article |
Xi, Bock, Müller, Sun, Meissner, Li
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In: Bioinformatics [28], 430-432 | Journal Article |
Yalak
[-] | 2005 | | Analysis of Mutations in the Death Domains, Death Effector Domains, Caspase
Recruitment Domains, and Pyrin Domains
Universität des Saarlandes | Thesis - Bachelor thesis |
Yamanishi, Pauwels, Saigo, Stovent
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In: Journal of Chemical Information and Modeling [51], 1183-1194 | Journal Article |
Yin
[-] | 2005 | | Model Selection for Mixtures of Mutagenetic Trees
Universität des Saarlandes | Thesis - Masters thesis |
Yin, Beerenwinkel, Rahnenführer, Lengauer
[-] | 2006 | | Model Selection for Mixtures of Mutagenetic Trees
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Zacharek, Fillmore, Lau, Gludish, Chou, Ho, Zamponi, Gazit, Bock, Jäger, Smith, Kim, Saunders, Wong, Lee, Roach, Rossi, Meissner, Gimelbrant, Park, Kim
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