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| # |  | Year | edoc | Lck | Author(s) [non member] | Editor(s) [non member] | Title | Type | edoc identifier | |||||
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| 482 |
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| | 2013 | | [Bozek, K.] Lengauer, Thomas [Sierra, S.] [Kaiser, Rolf] [Domingues, F.S.] | | Analysis of physicochemical and structural properties determining HIV-1 coreceptor usage In: PLoS Computational Biology [x], x | Journal Article | A15B25110B236E58C1257AD3004DB1C1-lengauer2012g | | |||||
| 2013 |  | [Neumann-Fraune, Maria] Beggel, Bastian [Pfister, Herbert] [Kaiser, Rolf] [Verheyen, Jens] | | High frequency of complex mutational patterns in lamivudine resistant hepatitis B virus isolates In: Journal of Medical Virology [200], 39-49 | Journal Article | 61B3D93A7F39323CC1257AFD00381E52-Beggel2013a | | |||||||
| | 2013 | | [Radivojac, Predrag] [Clark, Wyatt T] [Oron, Tal Ronnen] [Schnoes, Alexandra M] [Wittkop, Tobias] [Sokolov, Artem] [Graim, Kiley] [Funk, Christopher] [Verspoor, Karin] [Ben-Hur, Asa] [Pandey, Gaurav] [Yunes, Jeffrey M] [Talwalkar, Ameet S] [Repo, Susanna] [Souza, Michael L] [Piovesan, Damiano] [Casadio, Rita] [Wang, Zheng] [Cheng, Jianlin] [Fang, Hai] [Gough, Julian] [Koskinen, Patrik] [T\"{o}r\"{o}nen, Petri] [Nokso-Koivisto, Jussi] [Holm, Liisa] [Cozzetto, Domenico] [Buchan, Daniel W A] [Bryson, Kevin] [Jones, David T] [Limaye, Bhakti] [Inamdar, Harshal] [Datta, Avik] [Manjari, Sunitha K] [Joshi, Rajendra] [Chitale, Meghana] [Kihara, Daisuke] [Lisewski, Andreas M] [Erdin, Serkan] [Venner, Eric] [Lichtarge, Olivier] [Rentzsch, Robert] [Yang, Haixuan] [Romero, Alfonso E] [Bhat, Prajwal] [Paccanaro, Alberto] [Hamp, Tobias] [Ka\ss ner, Rebecca] [Seemayer, Stefan] [Vicedo, Esmeralda] [Schaefer, Christian] [Achten, Dominik] [Auer, Florian] [Boehm, Ariane] [Braun, Tatjana] [Hecht, Maximilian] [Heron, Mark] [H\"{o}nigschmid, Peter] [Hopf, Thomas A] [Kaufmann, Stefanie] [Kiening, Michael] [Krompass, Denis] [Landerer, Cedric] [Mahlich, Yannick] [Roos, Manfred] [Bj\"{o}rne, Jari] [Salakoski, Tapio] [Wong, Andrew] [Shatkay, Hagit] Gatzmann, Fanny Sommer, Ingolf [Wass, Mark N] [Sternberg, Michael J E] [Skunca, Nives] [Supek, Fran] [Bo\v{s}njak, Matko] [Panov, Pan\v{c}e] [D\v{z}eroski, Sa\v{s}o] [Smuc, Tomislav] [Kourmpetis, Yiannis A I] [van Dijk, Aalt D J] [Braak, Cajo J F Ter] [Zhou, Yuanpeng] [Gong, Qingtian] [Dong, Xinran] [Tian, Weidong] [Falda, Marco] [Fontana, Paolo] [Lavezzo, Enrico] [{Di Camillo}, Barbara] [Toppo, Stefano] [Lan, Liang] [Djuric, Nemanja] [Guo, Yuhong] [Vucetic, Slobodan] [Bairoch, Amos] [Linial, Michal] [Babbitt, Patricia C] [Brenner, Steven E] [Orengo, Christine] [Rost, Burkhard] [Mooney, Sean D] [Friedberg, Iddo] | | A large-scale evaluation of computational protein function prediction In: Nature Methods [10], 221-227 | Journal Article | 0B86C9EE091302D1C1257B47005C687E-Sommer2013 | | |||||
| 2013 |  | Röttger, Richard Kalaghatgi, Prabhav Sun, Peng [de Castro Soares, Siomar] [Azevedo, Vasco] [Wittkop, Tobias] Baumbach, Jan | Density Parameter Estimation for Finding Clusters of Homologous Proteins - Tracing Actinobacterial Pathogenicity Life Styles In: Bioinformatics [29], 215-222 | Journal Article | 30B0AE29B59422D6C1257AEE005D0C44-roettger2012density | | ||||||||
| | 2012 | | [Adams, David] [Altucci, Lucia] [Antonarakis, Stylianos E] [Ballesteros, Juan] [Beck, Stephan] [Bird, Adrian] Bock, Christoph [Boehm, Bernhard] [Campo, Elias] [Caricasole, Andrea] [Dahl, Fredrik] [Dermitzakis, Emmanouil T] [Enver, Tariq] [Esteller, Manel] [Estivill, Xavier] [Ferguson-Smith, Anne] [Fitzgibbon, Jude] [Flicek, Paul] [Giehl, Claudia] [Graf, Thomas] [Grosveld, Frank] [Guigó, Roderic] [Gut, Ivo] [Helin, Kristian] [Jarvius, Jonas] [Küppers, Ralf] [Lehrach, Hans] Lengauer, Thomas [Lernmark, Åke] [Leslie, David] [Loeffler, Markus] [Macintyre, Elizabeth] [Mai, Antonello] [Martens, Joost H A] [Minucci, Saverio] [Ouwehand, Willem H] [Pelicci, Pier Giuseppe] [Pendeville, Hèléne] [Porse, Bo] [Rakyan, Vardhman] [Reik, Wolf] [Schrappe, Martin] [Schübeler, Dirk] [Seifert, Martin] [Siebert, Reiner] [Simmons, David] [Soranzo, Nicole] [Spicuglia, Salvatore] [Stratton, Michael] [Stunnenberg, Hendrik G] [Tanay, Amos] [Torrents, David] [Valencia, Alfonso] [Vellenga, Edo] [Vingron, Martin] [Walter, Jörn] [Willcocks, Spike] | | BLUEPRINT to decode the epigenetic signature written in blood In: Nature Biotechnology [30], 224-226 | Journal Article | 9989EDB3AC4E86A0C1257B02002F3253-Adams2012 | | |||||
| 2012 | | Alcaraz, Nicolas Kucuk, Hande [Weile, Jochen] [Wipat, Anil] Baumbach, Jan | KeyPathwayMiner - Detecting case-specific biological pathways by using expression data In: Internet Mathematics [7], 299-313 | Journal Article | 1AB729ED38458292C125798400529F56-Baumbach2011g | | ||||||||
| | 2012 | | Baumbach, Jan | | Integrative computational biology In: Integrative Biology [4], 713-714 | Journal Article | B690C55C9B9D9377C1257B2800358BFD-Baumbach2012 | | |||||
| 2012 | | Beggel, Bastian [Neumann-Fraune, Maria] [Doering, Matthias] Lawyer, Glenn [Kaiser, Rolf] [Verheyen, Jens] Lengauer, Thomas | Genotyping hepatitis B virus dual infections using population-based sequence data In: Journal of General Virology [9], 1899-1907 | Journal Article | 497568B14391E344C1257AD30047BB4A-Beggel2012 | | ||||||||
| | 2012 | | [Bhattacharyya, Malay] Feuerbach, Lars [Bhadra, Tapas] [Bandyopadhyay, Sanghamitra] | | MicroRNA Transcription Start Site Prediction with Multi-objective Feature Selection In: Statistical Applications in Genetics and Molecular Biology [11], 6.1-6.25 | Journal Article | F45F4EE51DD4C2E1C12579DD0034CA49-Bandyopadhyay2011 | | |||||
| 2012 | | Bock, Christoph | Analysing and interpreting DNA methylation data In: Nature Reviews Genetics [13], 705-719 | Journal Article | F8E71752F0550117C1257AED00400B82-Bock2012a | | ||||||||
| | 2012 | | Bock, Christoph Lengauer, Thomas | | Epigenom-Karten erstellen und nutzen In: BIOspektrum [18], 138-141 | Journal Article | 4622B409D3D94853C1257B020030131B-BockLengauer2012b | | |||||
| 2012 | | Bock, Christoph Lengauer, Thomas | Managing drug resistance in cancer: lessons from HIV therapy In: Nature Reviews Cancer [12], 494-501 | Journal Article | A03DC150927CCEB8C1257AD3004C3714-lengauer2012d | | ||||||||
| | 2012 | | Bogojeska, Jasmina Lengauer, Thomas | | Hierarchical Bayes Model for Predicting Effectiveness of HIV Combination Therapies In: Statistical Applications in Genetics and Molecular Biology [11], 11.1-11.19 | Journal Article | 7280BD1B9F1F2D6DC1257AD200454050-Bogojeska2012a | | |||||
| 2012 | | Bogojeska, Jasmina [Stöckel, Daniel] [Zazzi, Maurizio] [Kaiser, Rolf] [Incardona, Francesca] [Rosen-Zvi, Michal] Lengauer, Thomas | [Lawrence, Neil] [Girolami, Mark] | History-alignment models for bias-aware prediction of virological response to HIV combination therapy In: Proceedings of the Fifteenth International Conference on Artificial Intelligence and Statistics (AISTATS 2012), 118-126 | Proceedings Article | 124D02AE50A81550C1257AD20046A1AC-Bogojeska2012b | | |||||||
| | 2012 | | Bozek, Katarzyna [Eckhardt, Manon] [Sierra, Saleta] [Kaiser, Rolf] [Kräusslich, Hans-Georg] [Müller, Barbara] Lengauer, Thomas | | An expanded model of HIV cell entry phenotype based on multi-parameter single-cell data In: Retrovirology [9], 60.1-60.15 | Journal Article | A43326DD97819D5BC1257AD3004C64D3-lengauer2012e | | |||||
| 2012 | | [Calvanese, Vincenzo] [Fernandez, Agustín F.] [Urdinguio, Rocío G.] [Suarez-Álvarez, Beatriz] [Mangas, Cristina] [Pérez-García, Vicente] [Bueno, Clara] [Montes, Rosa] [Ramos-Mejía, Verónica] [Martínez-Camblor, Pablo] [Ferrero, Cecilia] Assenov, Yassen Bock, Christoph [Menendez, Pablo] [Carrera, Ana Clara] [Lopez-Larrea, Carlos] [Fraga, Mario F.] | A promoter DNA demethylation landscape of human hematopoietic differentiation In: Nucleic Acids Research [40], 116-131 | Journal Article | 64F8D3538B0D036BC1257B02002FCC96-Calvanese2012 | | ||||||||
| | 2012 | | Dietzen, Matthias Zotenko, Elena [Hildebrandt, Andreas] Lengauer, Thomas | | On the Applicability of Elastic Network Normal Modes in Small-Molecule Docking In: Journal of Chemical Information and Modeling [52], 844-856 | Journal Article | D958D8BAFF9537BAC1257AD3004D42CE-Dietzen2012 | | |||||
| 2012 | | Doncheva, Nadezhda T Assenov, Yassen [Domingues, Francisco S.] Albrecht, Mario | Topological analysis and interactive visualization of biological networks and protein structures In: Nature Protocols [7], 670-685 | Journal Article | 60C74A3540567C51C1257AD4005BE1AA-Albrecht2012a | | ||||||||
| | 2012 | | Doncheva, Nadezhda T Kacprowski, Tim Albrecht, Mario | | Recent approaches to the prioritization of candidate disease genes In: Wiley Interdisciplinary Reviews: Systems Biology and Medicine [4], 429-442 | Journal Article | 76A8D4EB252E1DA8C1257AD8005C43C5-Albrecht2012c | | |||||
| 2012 | | Emig, Dorothea Blankenburg, Hagen Ramírez, Fidel Albrecht, Mario | [Larson, Richard S] | Functional characterization of human genes from exon expression and RNA interference results In: Bioinformatics and Drug Discovery, 33-53 | Part of a Book | 9FC57E3E169AAD3CC1257AD9003CFBCA-Albrecht2012f | | |||||||
| | 2012 | | [Fernandez, Agustin F.] Assenov, Yassen [Martin-Subero, Jose Ignacio] [Balint, Balazs] [Siebert, Reiner] [Taniguchi, Hiroaki] [Yamamoto, Hiroyuki] [Hidalgo, Manuel] [Tan, Aik-Choon] [Galm, Oliver] [Ferrer, Isidre] [Sanchez-Cespedes, Montse] [Villanueva, Alberto] [Carmona, Javier] [Sanchez-Mut, Jose V.] [Berdasco, Maria] [Moreno, Victor] [Capella, Gabriel] [Monk, David] [Ballestar, Esteban] [Ropero, Santiago] [Martinez, Ramon] [Sanchez-Carbayo, Marta] [Prosper, Felipe] [Agirre, Xabier] [Fraga, Mario F.] [Gran˜a, Osvaldo] [Perez-Jurado, Luis] [Mora, Jaume] [Puig, Susana] [Prat, Jaime] [Badimon, Lina] [Puca, Annibale A.] [Meltzer, Stephen J.] Lengauer, Thomas [Bridgewater, John] Bock, Christoph [Esteller, Manel] | | A DNA methylation fingerprint of 1628 human samples In: Genome Research [22], 407-419 | Journal Article | 1D85A05983450545C125798F003F831C-AssenovGenomeRes2011 | | |||||
| 2012 | | [Feuerbach, Lars] Halachev, Konstantin Assenov, Yassen Mueller, Fabian Bock, Christoph Lengauer, Thomas | [Anisimova, Maria] | Analyzing epigenome data in context of genome evolution and human diseases In: Evolutionary Genomics : Statistical and Computational Methods, Volume 2, 431-467 In: Methods of Molecular Biology [856], 431-467 | Part of a Book | 54748B8D02398C66C1257AD300336A25-lengauer2012b | | |||||||
| | 2012 | | Galata, Valentina | | Applying Lasso regression to related cell types for gene network astimation Universität des Saarlandes | Thesis - Bachelor thesis | 827D07A9006E7C7FC1257B270051F154-GalataBachelor2012 | | |||||
| 2012 | | [Garai, Ágnes] [Zeke, András] [Gógl, Gergo] [Töro, Imre] [Fördos, Ferenc] Blankenburg, Hagen [Bárkai, Tünde] [Varga, János] [Alexa, Anita] Emig, Dorothea Albrecht, Mario [Reményi, Attila] | Specificity of linear motifs that bind to a common mitogen-activated protein kinase docking groove In: Science Signaling [5], ra74,1-ra74,14 | Journal Article | E3231166DC9364AAC1257AD9003AF1F0-Albrecht2012e | | ||||||||
| | 2012 | | Halachev, K. [Bast, H.] Albrecht, F. Lengauer, Thomas Bock, Christoph | | EpiExplorer: live exploration and global analysis of large epigenomic datasets In: Genome Biology [13], R96,1-R96,14 | Journal Article | 15A6C3BF892187C2C1257AED003FCD73-BockLengauer2012a | | |||||
| 2012 | | [Heger, Eva] [Thielen, Alexander] [Gilles, Ramona] [Obermeier, Martin] Lengauer, Thomas [Kaiser, Rolf] [Trapp, Susanna] | APOBEC3G/F a one possible driving source for co-receptor switch of the human immunodeficiency virus-1 In: Medical Microbiology and Immunology [201], 7-16 | Journal Article | E2CADF8149F99CFEC1257AD30032E02E-lengauer2012a | | ||||||||
| | 2012 | | Klingen, Thorsten | | Automatic Recombination Analysis Using Recoo and Mebitoo Universität des Saarlandes | Thesis - Bachelor thesis | BC4D2050002650B7C1257B28003DBB0E-Klingen2012a^ | | |||||
| 2012 | | Lawyer, Glenn [Schülter, Eugen] [Kaiser, Rolf] [Reuter, Stefan] [Oette, Mark] Lengauer, Thomas |  | Endogenous or exogenous spreading of HIV-1 in Nordrhein-Westfalen, Germany, investigated by phylodynamic analysis of the RESINA Study cohort In: Medical Microbiology and Immunology [201], 259-269 | Journal Article | 9AD835932963CE5FC1257AD20040FFB8-Lawyer2012 | | |||||||
| | 2012 | | Lengauer, Thomas | | Bioinformatical Assistance of Selecting Anti-HIV Therapies: Where Do We Stand? In: Intervirology [55], 108-112 | Journal Article | 5FD44ECAFCBC86ABC1257B1200419E45-Lengauer2012z | | |||||
| 2012 | | Lengauer, Thomas Albrecht, Mario Domingues, Francisco S. | [Meyers, Robert A.] | Computational Biology In: Encyclopedia of Molecular Cell Biology and Molecular Medicine, 1-71 | Part of a Book | C6545BDC6EE10AB7C1257AD9003E8B44-Albrecht2012g | | |||||||
| | 2012 | | [Mekhubad, Shila] Bock, Christoph [de Boer, A. Sophie] [Kiskinis, Evangelos] [Meissner, Alexander] [Eggan, Kevin] | | Erosion of dosage compensation impacts human iPSC disease modeling In: Cell Stem Cell [10], 595-609 | Journal Article | 8DCDA667115485ACC1257AED004067AA-Bock2013c | | |||||
| 2012 | | [Mikeska, Thomas] Bock, Christoph [Do, Hongdo] [Dobrovic, Alexander] | DNA methylation biomarkers in cancer: Progress towards clinical implementation In: Expert Reviews of Molecular Diagnostics [12], 473-487 | Journal Article | 9A69955C0CB231DDC1257AED0040310C-Bock2012b | | ||||||||
| | 2012 | | | [Obermeier, Martin] [Camacho, Ricardo] [Charpentier, Charlotte] [Deschamps, Diane] [Eberle, Joseph] [Gürtler, Lutz] [Ruelle, Jean] Pironti, Alejandro [Brun-Veziet, Francoise] [Stürmer, Martin] [Kaiser, Rolf] | [Kippax, Susan] [Salif Sow, Papa] [Wainberg, Mark] [Heidari, Shirin] | | HIV2EU: supporting standardized HIV-2 drug resistance interpretation in Europe In: Journal of the International AIDS Society, 135 | Poster | 9744D75F71504D05C1257AD900435BC3-Pironti2012hiv12b | | |||
| 2012 | | [Obermeier, Martin] Pironti, Alejandro [Berg, Thomas] [Braun, Patrick] [Däumer, Martin] [Eberle, Josef] [Ehret, Robert] [Kaiser, Rolf] [Kleinkauf, Niels] [Korn, Klaus] [Kücherer, Claudia] [Müller, Harm] [Noah, Christian] [Stürmer, Martin] Thielen, Alexander [Wolf, Eva] [Walter, Hauke] | HIV-GRADE: A Publicly Available, Rules-Based Drug Resistance Interpretation Algorithm Integrating Bioinformatic Knowledge In: Intervirology [55], 102-107 | Journal Article | 7C7905771387B06EC12579A3004EBC78-Obermeier2012 | | ||||||||
| | 2012 | | [Oette, Mark] [Schulter, Eugen] [Rosen-Zvi, Michal] [Peres, Yardena] [Zazzi, Maurizio] [Sonnerborg, Anders] [Struck, Daniel] Altmann, Andre [Kaiser, Rolf] | | Efficacy of antiretroviral therapy switch in HIV-infected patients: A 10-year analysis of the EuResist cohort In: Intervirology [55], 160-166 | Journal Article | 5613A3DB7C931FE5C1257B2B002C05D6-Oette2012b | | |||||
| 2012 | | Pauling, Josch Röttger, Richard [Neuner, Andreas] [Salgado, Heladia] [Collado-Vides, Julio] Kalaghatgi, Prabhav [Azevedo, Vasco] [Tauch, Andreas] [Pühler, Alfred] Baumbach, Jan | On the trail of EHEC/EAEC - unraveling the gene regulatory networks of human pathogenic Escherichia coli bacteria In: Integrative Biology [4], 728-733 | Journal Article | D4E287F7DF52A961C1257AEE005DA3EB-pauling2012ehec | | ||||||||
| | 2012 | | Pauling, Josch Röttger, Richard [Tauch, Andreas] [Azevedo, Vasco] Baumbach, Jan | | CoryneRegNet 6.0 - Updated database content, new analysis methods and novel features focusing on community demands In: Nucleic Acids Research [40], D610-D614 | Journal Article | 79EBA9C599FD68DEC1257AEE005B354F-pauling2012coryneregnet | | |||||
| 2012 | | Pfeifer, Nico Lengauer, Thomas | | Improving HIV coreceptor usage prediction in the clinic using hints from next-generation sequencing data In: Bioinformatics [28], i589-i595 | Journal Article | 571D6E055BF61874C1257AD200550B98-Pfeifer2012 | | |||||||
| | 2012 | | | Pironti, Alejandro Lengauer, Thomas [Kaiser, Rolf] [Schülter, Eugen] [Verheyen, Jens] | | | Characterization of HIV-1 Gag Subtype C In: Abstract Book. 9th Workshop on HIV \& Hepatitis Treatment Strategies \& Antiviral Drug Resistance, 40-41 | Poster | AA332AAA18D26319C1257AD9003E4FD3-Pironti2012 | | |||
| 2012 | | Ramírez, Fidel Lawyer, Glenn Albrecht, Mario | Novel search method for the discovery of functional relationships In: Bioinformatics [28], 269-276 | Journal Article | 613960877D2427AAC125799500448623-Albrecht2012b | | ||||||||
| | 2012 | | Reppas, Andreas Lawyer, Glenn | [Simos, Theodore] [Psihoyios, George] [Tsitouras, Charalampos] [Anastassi, Zacharias] | | Low k-shells identify bridge elements critical to disease flow in small-world networks In: Numerical Analysis and Applied Mathematics (ICNAAM 2012), 1426-1429 | Proceedings Article | 8D72D66056E847E1C1257AD20057F4F6-Reppas2012 | | ||||
| 2012 | | [Reuter, Stefan] [Oette, Mark] [Kaiser, Rolf] Lengauer, Thomas [Fätkenheuer, Gerd] [Rockstroh, Jürgen] [Knechten, Heribert] [Häussinger, Dieter] | Risk factors associated with older age in treatment-naive HIV-positive patients In: Intervirology [55], 147-153 | Journal Article | E769C90B1CAF142AC1257B12004229FB-Reuter2012a | | ||||||||
| | 2012 | | [Rost, Burkhard] [Gaasterland, Terry] Lengauer, Thomas [Linial, Michal] [Markel, Scott] [McKay, B. J. Morrison] [Schneider, Reinhard] [Horton, Paul] [Kelso, Janet] | | Paving the future: finding suitable ISMB venues In: Bioinformatics [28], 2556-2559 | Journal Article | 0B19F06C7EFC81EDC1257B2B00360173-Rost2012 | | |||||
| 2012 | | Röttger, Richard [Rueckert, Ulrich] [Taubert, Jan] Baumbach, Jan | How Little Do We Actually Know? - On the Size of Gene Regulatory Networks. In: IEEE/ACM transactions on computational biology and bioinformatics [9], 1293-1300 | Journal Article | 6E2B3F5B32E19662C1257AEE005BED4E-roettger2012little | | ||||||||
| | 2012 | | | [Schuelter, Eugen] [Lübcke, Nadine] [Jensen, Björn] [Zazzi, Maurizio] [Sönnerborg, Anders] Lengauer, Thomas [Incardona, Francesca] [Camacho, Richardo] [Schmit, J] [Clotet, Bonaventura] [Kaiser, Rolf] Pironti, Alejandro | [Kippax, Susan] [Salif Sow, Papa] [Wainberg, Mark] [Heidari, Shirin] | | Etravirine in protease inhibitor-free antiretroviral combination therapies In: Journal of the International AIDS Society, 155-156 | Poster | 61F0C6C7994482BDC1257AD900443CDF-Pironti2012hiv12c | | |||
| 2012 | | Setty, Yaki | Multi-scale computational modeling of developmental biology In: Bioinformatics [28], 2022-2028 | Journal Article | 4705DA38799626B7C1257B120042D4E5-Settyr2012 | | ||||||||
| | 2012 | | | [Sierra, Saleta] [Dzbowski, Jan Nikolaj] Pironti, Alejandro [Gueney, L] Thielen, Alexander [Reuter, Stefan] [Esser, Stefan] [Fätkenheuer, Gerd] Lengauer, Thomas [Hider, Dominik] [Hoffmann, Daniel] [Pfister, Holger] [Jensen, Björn] [Kaiser, Rolf] | [Kippax, Susan] [Salif Sow, Papa] [Wainberg, Mark] [Heidari, Shirin] | | Optimisation of baseline genotypic testing for safe and efficient maraviroc administration In: Journal of the International AIDS Society, 101-102 | Poster | B0A9FF87C127C0F3C1257AD90042B771-Pironti2012hiv12a | | |||
| 2012 | | [Simmer, Femke] [Brinkman, Arie B.] Assenov, Yassen [Matarese, Filomena] [Kaan, Anita] [Sabatino, Lina] [Villanueva, Alberto] [Huertas, Dori] [Esteller, Manel] Lengauer, Thomas Bock, Christoph Colantuoni, Vittorio [Altucci, Lucia] [Stunnenberg, Henk G.] | Comparative genome-wide DNA methylation analysis of colorectal tumor and matched normal tissues In: Epigenetics [7], 1355-1367 | Journal Article | 36606C5138C4EC2BC1257AD4005AD037-Simmer2012 | | ||||||||
| | 2012 | | Thielen, Alexander Lengauer, Thomas | | Geno2pheno[454]: A Web Server for the Prediction of HIV-1 Coreceptor Usage from Next-Generation Sequencing Data In: Intervirology [55], 113-117 | Journal Article | 00A82FD3324BC512C12579A3004FE8AD-Thielen2011 | | |||||
| 2012 | | Welsch, Christoph [Schweizer, Sabine] [Shimakami, Testsuro] [Domingues, Francisco S.] [Kim, Seungtaek] [Lemon, Stanley, M.] [Antes, Iris] | Ketoamide Resistance and Hepatitis C Virus Fitness in Val55 Variants of the NS3 Serine Protease In: Antimicrobial Agents and Chemotherapy [56], 1907-1915 | Journal Article | A76C4F979CD85F52C1257B120044B815-Welsch2012z | | ||||||||
| | 2012 | | [Welsch, Christoph] [Shimakami, Tetsuro] [Hartmann, Christoph] [Yang, Yan] [Domingues, Francisco S.] Lengauer, Thomas [Zeuzem, Stefan] [Lemon, Stanley M.] | | Peptidomimetic Escape Mechanisms Arise via Genetic Diversity in the Ligand-Binding Site of the Hepatitis C Virus NS3/4A Serine Protease In: Gastroenterology [142], 654-663 | Journal Article | 29C8E52DB394DD9FC1257AD3004BEA49-lengauer2012c | | |||||
| 2012 | | [Xi, Yuanxin] Bock, Christoph Müller, Fabian [Sun, Deqiang] [Meissner, Alexander] [Li, Wei] | RRBSMAP: a fast, accurate and user-friendly alignment tool for reduced representation bisulfite sequencing In: Bioinformatics [28], 430-432 | Journal Article | 04A4E905EF704B98C1257B160035703B-Xi2012 | | ||||||||
| | 2012 | | [Zazzi, Maurizio] [Incardona, Francesca] [Rosen-Zvi, Michal] [Prosperi, Mattia] Lengauer, Thomas Altmann, Andre [Sonnerborg, Anders] [Lavee, Tamar] [Schülter, Eugen] [Kaiser, Rolf] | | Predicting Response to Antiretroviral Treatment by Machine Learning: The EuResist Project In: Intervirology [55], 123-127 | Journal Article | 855AC39B714E1C1AC1257B160035DD40-Zazzi2012 | | |||||
| 2012 | | Zeidler, Michael | Cloudbasierte Analyse von viralen Sequenzdaten der neuesten Generation Universität des Saarlandes | Thesis - Bachelor thesis | 41A45DC3FAA52D98C1257B270052168E-ZeidlerBachelor2012 | | ||||||||
| | 2011 | | [Alcaro, Stefano] [Alteri, Claudia] [Artese, Anna] [Ceccherini-Silberstein, Francesca] [Costa, Giosuè] [Ortuso, Francesco] [Forbici, Federica] [Santoro, Maria Mercedes] [Parrotta, Lucia] [Flandre, Philippe] [Descamps, Diane] [Calvez, Vincent] [Marcelin, Anne-Genevieve] [Perno, Carlo Federico] Sing, Tobias [Svicher, Valentina] | | Docking Analysis and Resistance Evaluation of Clinically Relevant Mutations Associated with the HIV-1 Nonnucleoside Reverse Transcriptase Inhibitors Nevirapine, Efavirenz and Etravirine In: ChemMedChem [6], 2203-2213 | Journal Article | 814AE4C2010C44A6C12579C90050B2D5-Sing2011 | | |||||
| 2011 | | [Aranda, Bruno] Blankenburg, Hagen [Kerrien, Samuel] [Brinkman, Fiona S.] [Ceol, Arnaud] [Chautard, Emilie] [Dana, Jose M.] [De Las Rivas, Javier] [Dumousseau, Marine] [Galeota, Eugenia] [Gaulton, Anna] [Goll, Johannes] [Hancock, Robert E. W.] [Isserlin, Ruth] [Jimenez, Rafael C.] [Kerssemakers, Jules] [Khadake, Jyoti] [Lynn, David J.] [Michaut, Magali] [O'Kelly, Gavin] [Ono, Keiichiro] [Orchard, Sandra] [Prieto, Carlos] [Razick, Sabry] [Rigina, Olga] [Salwinski, Lukasz] [Simonovic, Milan] [Velankar, Sameer] [Winter, Andrew] [Wu, Guanming] [Bader, Gary D.] [Cesareni, Gianni] [Donaldson, Ian M.] [Eisenberg, David] [Kleywegt, Gerard J.] [Overington, John] [Ricard-Blum, Sylvie] [Tyers, Mike] Albrecht, Mario [Hermjakob, Henning] | PSICQUIC and PSISCORE: accessing and scoring molecular interactions In: Nature Methods [8], 528-529 | Journal Article | D6449AD62B8E5ECAC1257979005EA156-Albrecht2011g | | ||||||||
| | 2011 | | [Bleif, Sabrina] [Hannemann, Frank] [Lisurek, Michael] [von Kries, Jens Peter] [Zapp, Josef] Dietzen, Matthias [Antes, Iris] [Bernhardt, Rita] | | Identification of CYP106A2 as a Regioselective Allylic Bacterial Diterpene Hydroxylase In: ChemBioChem [12], 576-582 | Journal Article | 2E95E033A7C7862EC1257831004AD54C-Dietzen2011 | | |||||
| 2011 | | Bock, Christoph [Kiskinis, Evangelos] [Verstappen, Griet] [Gu, Hongcang] [Boulting, Gabriella] [Smith, Zachary D.] [Ziller, Michael] [Croft, Gist F.] [Amoroso, MacKenzie W.] [Oakley, Derek H.] [Gnirke, Andreas] [Eggan, Kevin] [Meissner, Alexander] | Reference Maps of Human ES and iPS Cell Variation Enable High-Throughput Characterization of Pluripotent Cell Lines In: Cell [144], 439-452 | Journal Article | 79DC93A13758D5CFC12579C9005315C1-BockCELL2011 | | ||||||||
| | 2011 | | [Cerdeira, Louise Teixeira] [Carneir, Aadriana Ribeiro] [Ramos, Rommel Thiago Juca] [de Almeida, Sintia Silva] [D'Afonseca, Vivian] [Schneider, Maria Paula Cruz] Baumbach, Jan [Tauch, Andreas] [McCulloch, John Anthony] [Azevedo, Vasco Ariston Carvalho] [Silva, Aartur] | | Rapid hybrid de novo assembly of a microbial genome using only short reads: Corynebacterium pseudotuberculosis I19 as a case study In: Journal of Microbiological Methods [86], 218-223 | Journal Article | 201B63DD81C17CF1C125798400513FB7-Baumbach2011e | | |||||
| 2011 | | Doncheva, Nadezhda T. [Klein, Karsten] Domingues, Francisco S. Albrecht, Mario | Analyzing and visualizing residue networks of protein structures In: Trends in Biochemical Sciences [36], 179-182 | Journal Article | E1E316E113D3FC27C125782B00550967-Albrecht2011c | | ||||||||
| | 2011 | | Döring, Matthias | | Web Implementation of the HBV Dual Infection Model Universität des Saarlandes | Thesis - Bachelor thesis | DBAA200907674FFCC12579A3004C66D5-Doering2011 | | |||||
| 2011 | | Emig, Dorothea Albrecht, Mario | Tissue-specific proteins and functional implications In: Journal of Proteome Research [10], 1893-1903 | Journal Article | 62CB25F210F6417DC125782B0054CDC0-Albrecht2011b | | ||||||||
| | 2011 | | Emig, Dorothea Kacprowski, Tim Albrecht, Mario | | Measuring and analyzing tissue specificity of human genes and protein complexes In: EURASIP Journal on Bioinformatics and Systems Biology [2011], 5,1-5,6 | Journal Article | C1FAC5736B4F6323C1257979005DDE82-Albrecht2011f | | |||||
| 2011 | | Feuerbach, Lars [Lyngso, Rune B.] Lengauer, Thomas [Hein, Jotun] | Reconstructing the ancestral germline methylation state of young repeats In: Molecular Biology and Evolution [28], 1777-1784 | Journal Article | B8513630A1304992C1257848004D2F99-Feuerbach2011a | | ||||||||
| | 2011 | | [Gu, Hongcang] [Smith, Zachary D.] Bock, Christoph [Boyle, Patrick] [Gnirke, Andreas] [Meissner, Alexander] | | Preparation of reduced representation bisulfite sequencing libraries for genome-scale DNA methylation profiling In: Nature Protocols [6], 468-481 | Journal Article | 6A8A7392D320402EC12579CA0037E95A-BockNatureProtocols2011 | | |||||
| 2011 | | [Heger, Eva] Thielen, Alexander [Gilles, Ramona] [Obermeier, Martin] Lengauer, Thomas [Kaiser, Rolf] [Trapp, Susanna] | APOBEC3G/F as one possible driving force for co-receptor switch of the human immunodeficiency virus-1 In: Medical Microbiology and Immunology [201], 7-16 | Journal Article | A9E925A12A19EE9AC12579A3004AA2F5-Herger2011 | | ||||||||
| | 2011 | | [Hofmann, Wolf Peter] [Chung, Tje Lin] [Osbahr, Carola] [Susser, Simone] [Karey, Ursel] [Mihm, Ulrike] Welsch, Christoph [Lötsch, Jörn] [Sarrazin, Christoph] [Zeuzem, Stefan] [Herrmann, Eva] | | Impact of ribavirin on HCV replicon RNA decline during treatment with interferon-α and the protease inhibitors boceprevir or telaprevir In: Antiviral Therapy [16], 695-704 | Journal Article | F541A179EFE9A25CC12579CA003B588D-Welsch2011 | | |||||
| 2011 | | Junge, Alexander | Unsupervised dissection of cancer types based on genomic, epigenomic and transciptomic features Universität des Saarlandes | Thesis - Bachelor thesis | 9FD888AE716C4BA6C1257B2600394DB0-JungeBachelor2012 | | ||||||||
| | 2011 | | [Knoepfel, Stefanie] [Di Giallonardoc, Francesca] [Däumer, Martin] Thielen, Alexander [Metzner, Karin J] | | In-depth analysis of G-to-A hypermutation rate in HIV-1 env DNA induced by endogenous APOBEC3 proteins using massively parallel sequencing In: Journal of Virological Methods [71], 329-338 | Journal Article | 802E7F1E070A9430C12577FB002E3F0B-Knoepfel2010 | | |||||
| 2011 | | [Krol, Elizaveta] [Blom, Jochen] [Winnebald, Jörn] [Berhörster, Alexander] [Barnett, Melanie J.] [Goesmann, Alexander] Baumbach, Jan [Becker, Anke] | RhizoRegNet - A database of rhizobial transcription factors and regulatory networks. In: Journal of Biotechnology [155], 127-134 | Journal Article | 69DC4420234ACB07C125798000526C2D-Baumbach2011 | | ||||||||
| | 2011 | | [Kumar, Vinod] Sun, Peng [Vamathevan, Jessica] [Li, Yong] [Ingraham, Karen] [Palmer, Leslie] [Huang, Jianzhong] [Brown, James R.] | | Comparative Genomics of Klebsiella pneumoniae Strains with Different Antibiotic Resistance Profiles In: Antimicrobial Agents and Chemotherapy [55], 4267-4276 | Journal Article | 2D9BA507A3D5C628C12579840055F64E-Sun2011 | | |||||
| 2011 | | Lawyer, Glenn Altmann, André Thielen, Alex [Zazzi, Maurizio] [Sönnerborg, Anders] Lengauer, Thomas | HIV-1 mutational pathways under multidrug therapy In: AIDS Research and Therapy [8], 1-13 | Journal Article | 2F93768291824C79C12579810047FA47-Lawyer2011 | | ||||||||
| | 2011 | | | Lengauer, Thomas | Computermodelle in der Wissenschaft - zwischen Analyse, Vorhersage und Suggestion | Book | 3E9DF4BFB79DAB4EC125799100486E59-Lengauer2011c | | |||||
| 2011 | | [Lutsik, Pavlo] Feuerbach, Lars [Arand, Julia] Lengauer, Thomas [Walter, Jörn] Bock, Christoph | BiQ Analyzer HT: locus-specific analysis of DNA methylation by high-throughput bisulfite sequencing In: Nucleic Acids Research [39], W551-W556 | Journal Article | A49327FE99C2F038C1257964004D5598-LutsikFeuerbach2011 | | ||||||||
| | 2011 | | [Morris, John H.] [Apeltsin, Leonard] [Newman, Aaron M.] Baumbach, Jan [Wittkop, Tobias] [Su, Gang] [Bader, Gary D.] [Ferrin, Thomas E.] | | clusterMaker: A Multi-algorithm Clustering Plugin for Cytoscape In: BMC Bioinformatics [12], 436,1-436,14 | Journal Article | C51A0748E9E7F1D9C125798400538F8E-Baumbach2011i | | |||||
| 2011 | | Nebot, Victoria Ye, Min Albrecht, Mario Eom, Jae-Hong Weikum, Gerhard | DIDO: a disease-determinants ontology from web sources In: Proceedings of the 20th International Conference on World Wide Web (WWW 2011), 237-240 | Proceedings Article | F10CC7BF2806E34AC1257979005D625C-Nebot2011 | | ||||||||
| | 2011 | | | Pironti, Alejandro Altmann, André Büch, Joachim Lengauer, Thomas | | | A Computational Method for Predicting First-Line Antiretroviral Therapy Success In: Abstract Book. 9th Workshop on HIV & Hepatitis Treatment Strategies & Antiviral Drug Resistance, 94 | Poster | FDD25ED3A5493D0AC1257878004D2FCC-Pironti2011 | | |||
| 2011 | | [Ramos, Rommel T.J.] [Carneiro, Adriana R.] Baumbach, Jan [Azevedo, Vasco] [Schneider, Maria P.C.] [Silva, Artur] | Analysis of quality raw data of second generation sequencers with Quality Assessment Software In: BMC Research Notes [4], 130,1-130,6 | Journal Article | 3D1630A8AF4DA426C125798400505C12-Baumbach2011c | | ||||||||
| | 2011 | | [Reiss, Simon] [Rebhan, Ilka] [Backes, Perdita] [Romero-Brey, Ines] [Erfle, Holger] [Matula, Petr] [Kaderali, Lars] [Poenisch, Marion] Blankenburg, Hagen [Hiet, Marie-Sophie] [Longerich, Thomas] Diehl, Sarah Ramírez, Fidel [Balla, Tamas] [Rohr, Karl] [Kaul, Artur] [Bühler, Sandra] [Pepperkok, Rainer] Lengauer, Thomas Albrecht, Mario [Eils, Roland] [Schirmacher, Peter] [Lohmann, Volker] [Bartenschlager, Ralf] | | Recruitment and activation of a lipid kinase by hepatitis C virus NS5A is essential for integrity of the membranous replication compartment In: Cell Host & Microbe [9], 32-45 | Journal Article | 238E61F40782DB5DC125782B0054B3B1-Albrecht2011a | | |||||
| 2011 | | Reuter, Kerstin | Estimating and Using the Uncertainty in the Phenotypic Resistance Assay of the Hepatitis B Virus to Improve IC-50 Prediction from Genotype Universität des Saarlandes | Thesis - Bachelor thesis | E9F781C21284C83AC12579A3004CAC1A-Reuter2011 | | ||||||||
| | 2011 | | [Reuter, Stefan] [Oette, Mark] [Wilhelm, Frank Clemens] Beggel, Bastian [Kaiser, Rolf] [Balduin, Melanie] [Schweitzer, Finja] [Verheyen, Jens] [Adams, Ortwin] Lengauer, Thomas [Faetkenheuer, Gerd] [Pfister, Herbert] [Haeussinger, Dieter] | | | Erratum to: Prevalence and characteristics of hepatitis B and C virus infections in treatment-naïve HIV-infected patients. In: Medical Microbiology and Immunology [200], 51-51 | Journal Article | 9DEDA9F8D4DD843CC12578000042937A-Reuter2010b | | ||||
| 2011 | | [Reuter, Stefan] [Oette, Mark] [Wilhelm, Frank Clemens] Beggel, Bastian [Kaiser, Rolf] [Balduin, Melanie] [Schweitzer, Finja] [Verheyen, Jens] [Adams, Ortwin] Lengauer, Thomas [Faetkenheuer, Gerd] [Pfister, Herbert] [Haeussinger, Dieter] | Prevalence and characteristics of hepatitis B and C virus infections in treatment-naïve HIV-infected patients In: Medical Microbiology and Immunology [200], 39-49 | Journal Article | CD45043052C09CDFC125780000412EDD-Reuter2010a | | ||||||||
| | 2011 | | Roomp, Kirsten Domingues, Francisco S. | | Predicting interactions between T cell receptors and MHC-peptide complexes In: Molecular Immunology [48], 553-562 | Journal Article | BCDFD6F808A33CC0C1257817004C5A1A-Roomp2011a | | |||||
| 2011 | | [Santos, Anderson R] [Santos, Marcos A] Baumbach, Jan [McCulloch, John A] [Oliveira, Guilherme C] [Silva, Artur] [Miyoshi, Anderson] [Azevedo, Vasco] | A singular value decomposition approach for improved taxonomy classification of biological sequences In: BMC Genomics [12], S11,1-S11,15 | Journal Article | 4DE4BD69282154FAC125798400543249-Baumbach2011j | | ||||||||
| | 2011 | | [Schülter, Eugen] [Oette, Mark] [Balduin, Melanie] [Reuter, Stefan] [Rockstroh, Jürgen] [Fätkenheuer, Gerd] [Esser, Stefan] Lengauer, Thomas [Agacfidan, Ali] [Pfister, Herbert] [Kaiser, Rolf] [Akgul, Baki] | | HIV prevalence and route of transmission in Turkish immigrants living in North-Rhine Westphalia, Germany In: Medical Microbiology and Immunology [200], 219-223 | Journal Article | 478EAA1AD7F4C83AC12579CA004B0EB3-Schulter2011 | | |||||
| 2011 | | [Seclen, Eduardo] [Soriano, Vincente] [González, Maria M] [Gómez, Sagrario] Thielen, Alexander [Poveda, Eva] | High Concordance between the Position-Specific Scoring Matrix and Geno2pheno Algorithms for Genotypic Interpretation of HIV-1 Tropism: V3 Length as the Major Cause of Disagreement In: Journal of Clinical Microbiology [49], 3380-3382 | Journal Article | 35D715D84875195EC12579A3004BBCE2-Seclen2011 | | ||||||||
| | 2011 | | [Shimakami, Tetsuro] Welsch, Christoph [Yamane, Daisuke] [McGivern, David R.] [Yi, MinKyung] [Zeuzem, Stefan] [Lemon, Stanley M.] | | Protease Inhibitor-Resistant Hepatitis C Virus Mutants With Reduced Fitness From Impaired Production of Infectious Virus In: Gastroenterology [140], 667-675 | Journal Article | 6D92E1A5AEB92ACAC12579CA004EE104-Shimakami2011 | | |||||
| 2011 | | [Svichera, Valentina] [Centoa, Valeria] [Salpinia, Romina] [Mercurioa, Fabio] [Fraune, Maria] Beggel, Bastian [Hanc, Yue] [Gorid, Caterina] [Wittkope, Linda] [Bertolif, Ada] [Michelig, Valeria] [Gubertinig, Guido] [Longoh, Roberta] [Romanoh, Sara] [Viscah, Michela] [Gallinaroi, Valentina] [Marinoj, Nicoletta] [Mazzottaj, Francesco] [De Sanctisi, Giuseppe Maria] [Fleurye, Hervè] [Trimoulete, Pascale] [Angelicoa, Mario] [Cappielloh, Giuseppina] [Zhangc, Xin Xin] [Verheyenb, Jens] [Ceccherini-Silbersteina, Francesca] [Pernoa, Carlo Federico] | | Role of hepatitis B virus genetic barrier in drug-resistance and immune-escape development In: Digestive and Liver Disease [43], 975–983 | Journal Article | 18C8DD22798977F1C1257AFD004048E5-Beggel2011s | | |||||||
| | 2011 | | [Svicher, Valentina] [Cento, Valeria] [Salpini, Romina] [Mercurio, Fabio] [Fraune, Maria] Beggel, Bastian [Han, Yue] [Gori, Caterina] [Wittkop, Linda] [Bertoli, Ada] [Micheli, Valeria] [Gubertini, Guido] [Longo, Roberta] [Romano, Sara] [Visca, Michela] [Gallinaro, Valentina] [Marino, Nicoletta] [Mazzotta, Francesco] [De Sanctis, Giuseppe Maria] [Fleury, Hervè] [Trimoulet, Pascale] [Angelico, Mario] [Cappiello, Giuseppina] [Zhang, Xin Xin] [Verheyen, Jens] [Ceccherini-Silberstein, Francesca] [Perno, Carlo Federico] | | Role of hepatitis B virus genetic barrier in drug-resistance and immune-escape development In: Digestive and Liver Disease [43], 975-983 | Journal Article | 074828CB14111069C125796400478483-Svicher2011 | | |||||
| 2011 | | [Swenson, Luke C] [Mo, Theresa] [Dong, Winnie WY] [Zhong, Xiaoyin] [Woods, Conan K] Thielen, Alexander [Jensen, Mark A] [Knapp, David JHF] [Chapman, Douglass] [Lewis, Marilyn] [James, Ian] [Heera, Jayvant] [Valdez, Hernan] [Harrigan, P Richard] | Deep V3 sequencing for HIV type 1 tropism in treatment-naive patients: a reanalysis of the MERIT trial of maraviroc. In: Clinical Infectious Diseases [53], 732-742 | Journal Article | DD7C970DBE8D20A9C12579A3004C38FA-Swenson2011b | | ||||||||
| | 2011 | | [Swenson, Luke C.] [Mo, Theresa] [Dong, Winnie W. Y.] [Zhong, Xiaoyin] [Woods, Conan K.] [Jensen, Mark A.] Thielen, Alexander [Chapman, Douglass] [Lewis, Marilyn] [James, Ian] [Heera, Jayvant] [Valdez, Hernan] [Harrigan, P. Richard] | | Deep Sequencing to Infer HIV-1 Co-Receptor Usage: Application to Three Clinical Trials of Maraviroc in Treatment-Experienced Patients In: The Journal of Infectious Diseases [203], 237-245 | Journal Article | 3431690AA73C5B0EC12579A300496A2B-Swenson2011 | | |||||
| 2011 | | Thielen, Alexander Lengauer, Thomas [Swenson, Luke C] [Dong, Winnie W.Y.] [McGovern, Rachel A] [Lewis, Marilyn] [James, Ian] [Heera, Jayvant] [Valdez, Hernan] [Harrigan, P Richard] | Mutations in gp41 are correlated with coreceptor tropism but do not improve prediction methods substantially In: Antiviral Therapy [16], 319-328 | Journal Article | B00204CCF669A6FDC12577FB002D58C9-Thielen2010gp41 | | ||||||||
| | 2011 | | Tolosi, Laura Lengauer, Thomas | | Classification with correlated features: unreliability of feature ranking and solutions In: Bioinformatics [27], 1986-1994 | Journal Article | 926CC3BF2F93187EC12578DB003348CB-Tolosi2011 | | |||||
| 2011 | | [Welker, M.-W.] Welsch, Christoph [Ochs, D.] [Hofmann, W. P.] [Herrmann, E.] [Piiper, A.] [Hartmann, R. W.] [Zeuzem, S.] [Sarrazin, C.] [Kronenberger, Bernd] | Comparison of Envelope 2 CD81 binding regions in PBMC-derived versus serum-derived hepatitis C virus isolates: higher conservation of CD81 region 2 in PBMC isolates In: Journal of Viral Hepatitis [18], 181-192 | Journal Article | F51C8EA1EE8CB91CC12579CA004FD5A6-Welker2011 | | ||||||||
| | 2011 | | [Wittkop, Tobias] Emig, Dorothea [Truss, Anke] Albrecht, Mario [Böcker, Sebastian] Baumbach, Jan | | Comprehensive cluster analysis with Transitivity Clustering In: Nature Protocols [6], 285-295 | Journal Article | F70A035C2665BB67C12577EE005655EA-Wittkop2011 | | |||||
| 2011 | | [Wittkop, Tobias] [Rahmann, Sven] Roettger, Richard [Boecker, Sebastian] Baumbach, Jan | Extension and robustness of Transitivity Clustering for protein-protein interaction network analysis In: Internet Mathematics [7], 255-273 | Journal Article | 0DCBD2BB44CB608AC12579840054D30A-Baumbach2011h | | ||||||||
| | 2011 | | [Xi, Yuanxin] Bock, Christoph Müller, Fabian [Sun, Deqiang] [Meissner, Alexander] [Li, Wei] | | RRBSMAP: A Fast, Accurate and User-friendly Alignment Tool for Reduced Representation Bisulfite Sequencing In: Bioinformatics [28], 430-432 | Journal Article | 31089ADFB02E6834C1257964003E3DFE-Xi2011 | | |||||
| 2011 | | [Yamanishi, Yoshihiro] [Pauwels, Edouard] Saigo, Hiroto [Stovent, Veronique] | Extracting Sets of Chemical Substructures and Protein Domains Governing Drug-Target Interactions In: Journal of Chemical Information and Modeling [51], 1183-1194 | Journal Article | A7BC16A63CCBF3C6C12579CA0050E0C0-Yamanishir2011 | | ||||||||
| | 2011 | | [Zacharek, Sima J.] [Fillmore, Christine M.] [Lau, Allison N.] [Gludish, David W.] [Chou, alan] [Ho, Joshua W. K.] [Zamponi, Raffaella] [Gazit, Roi] Bock, Christoph [Jäger, Natalie] [Smith, Zachary D.] [Kim, Tae-min] [Saunders, Arven H.] [Wong, Janice] [Lee, Joo-Hyeon] [Roach, Rebecca R.] [Rossi, Derrick J.] [Meissner, Alex] [Gimelbrant, Alexander A.] [Park, Peter J.] [Kim, Carla F.] | | Lung stem cell self-renewal relies on BMI1-dependent control of expression at imprinted loci In: Cell Stem Cell [9], 272-280 | Journal Article | DCD797B831172486C12579CA00518484-Zacharek2011 | | |||||
| 2011 | | [Zazzi, M.] [Kaiser, R.] [Sönnerborg, A.] [Struck, D] Altmann, Andre [Prosperi, M.] [Rosen-Zvi, M.] [Petroczi, A.] [Peres, Y.] [Schülter, E.] [Boucher, C.A.] [Brun-Vezinet, F.] [Harrigan, R.] [Morris, L.] [Obermeier, M.] [Perno, C.-F.] [Phanuphak, P.] [Pillay, D] [Shafer, R.W.] [Vandamme, A.-M.] [Van Laethem, K.] [Wensing, A.] Lengauer, Thomas [Incardona, F.] | Prediction of Response to Antiretroviral Therapy by Human Experts and by the EuResist Data-Driven Expert System (the EVE study) In: HIV Medicine [12], 211-218 | Journal Article | E46B79AFF67337F9C1257991003D66AC-Lengauer2011a | | ||||||||
| | 2010 | | Albrecht, Mario | | Color blindness In: Nature Methods [7], 775 | Journal Article | 0DD9CC1BAC4CC130C12577F100618875-Albrecht2010h | | |||||
| 2010 | | Albrecht, Mario [Kerren, Andreas] [Klein, Karsten] [Kohlbacher, Oliver] [Mutzel, Petra] [Paul, Wolfgang] [Schreiber, Falk] [Wybrow, Michael] | [Eppstein, David] [Gansner, Emden R.] | On open problems in biological network visualization In: Graph Drawing : 17th International Symposium, GD 2009, 256-267 | Proceedings Article | 1C036034D445BB89C12576A8004D2D52-Albrecht2009c | | |||||||
| | 2010 | | | Altmann, Andre Pironti, Alejandro Perner, Juliane Büch, Joachim Lengauer, Thomas | [Schapiro, Jonathan] [Boucher, Charles] | | Determination of clinically relevant cutoffs for HIV-1 phenotypic resistance estimates through a combined analysis of clinical trial and cohort data In: Abstract Book. 8th European Drug Resistance Workshop, 46 | Poster | 6A70E8DF32A7E75EC125782300599598-Altmann2010b | | |||
| 2010 | | Altmann, André Tolosi, Laura Sander, Oliver Lengauer, Thomas | Permutation importance: an unbiased feature importance measure In: Bioinformatics [26], 1340-1347 | Journal Article | B5AB874DF16FFCB6C12577AE004AC1E1-Altmann2010a | | ||||||||
| | 2010 | | Baumbach, Jan | | On the power and limits of evolutionary conservation - unraveling bacterial gene regulatory networks In: Nucleic Acids Research [38], 7877-7884 | Journal Article | 77EFA497AFC25426C12577EE004C8534-Baumbach2010_nar | | |||||
| 2010 | | Bock, Christoph [Tomazou, Eleni M.] [Brinkman, Arie B.] Müller, Fabian [Simmer, Femke] [Gu, Hongcang] [Jäger, Natalie] [Gnirke, Andreas] [Stunnenberg, Hendrik G.] [Meissner, Alexander] | | Quantitative comparison of genome-wide DNA methylation mapping technologies In: Nature Biotechnology [28], 1106-1114 | Journal Article | 4A01E857A8DB6E5DC125781800479EE5-BockTomazou2010 | | |||||||
| | 2010 | | Bock, Christoph [Von Kuster, Greg] Halachev, Konstantin [Taylor, James] [Nekrutenko, Anton] Lengauer, Thomas | [Barnes, Michael R.] [Breen, Gerome] | Web-based analysis of (epi-) genome data using EpiGRAPH and Galaxy. In: Genetic Variation : Methods and Protocols, 275-296 In: Methods of Molecular Biology [628], 275-296 | Part of a Book | 37B66D081AB68DE2C125781C003BC281-Bock2010b | | |||||
| 2010 | | Bogojeska, Jasmina [Bickel, Steffen] Altmann, André Lengauer, Thomas | | Dealing with sparse data in predicting outcomes of HIV combination therapies In: Bioinformatics [26], 2085-2092 | Journal Article | 3E1FBC4FF547FA99C12577F40059916E-Bogojeska2010 | | |||||||
| | 2010 | | Bozek, Katarzyna [Rosahl, A. L.] [Gaub, S.] [Lorenzen, S.] [Herzel, H.] | | Circadian transcription in liver In: Biosystems [102], 61-69 | Journal Article | 344098CF1C5D5F06C12577F10036B4FD-BozekCircadianLiver2010 | | |||||
| 2010 | | [Brunner, Susanne] [Hurni, Severine] [Streckeisen, Philipp] Mayr, Gabriele Albrecht, Mario [Yahiaoui, Nabila] [Keller, Beat] | Intragenic allele pyramiding combines different specificities of wheat Pm3 resistance alleles In: The Plant Journal [64], 433-445 | Journal Article | A7F46A1DAF353029C12577F10063ACFA-Albrecht2010i | | ||||||||
| | 2010 | | [Codoñer, Francisco M] [Pou, Christian] Thielen, Alexander [García, Federico] [Delgado, Rafael] [Dalmau, David] [Santos, José Ramon] [Buzón, Maria José] [Martínez-Picado, Javier Alvarez-Tejado, Miguel] [Clotet, Bonaventura] [Ruiz, Lidia] [Paredes, Roger] | | Dynamic escape of pre-existing raltegravir-resistant HIV-1 from raltegravir selection pressure In: Antiviral Research [88], 281-286 | Journal Article | AB5EC0D564447A06C12577F8003E384A-Codoner2010 | | |||||
| 2010 | | [Däumer, Martin] [Awerkiew, Sabine] [Sierra Aragon, Saleto] [Kartashev, Vladimir] [Poplavskaja, Tatjana] [Klein, Rolf] [Sichtig, Nadine] [Thielen, Bernhard] Lengauer, Thomas Roomp, Kirsten [Pfister, Herbert] [Kaiser, Rolf] | Short Communication: Selection of Thymidine Analogue Resitance Mutational Patterns in Children from a Common HIV Type 1 Subtype G Source In: AIDS Research and Human Retroviruses [26], 275-278 | Journal Article | A3AB35EEC366CD0BC1257816002D7F4F-Däumeretal2010 | | ||||||||
| | 2010 | | Dörr, Barbara | | Using copy number variation fpr predicting susceptibility to glioblastoma Universität des Saarlandes | Thesis - Bachelor thesis | 52D002519153E7FBC1257834003DB97E-Dörr2010a | | |||||
| 2010 | | [Ellinghaus, Eva] [Ellinghaus, David] [Stuart, Philip E.] [Nair, Rajan P.] [Debrus, Sophie] [Raelson, John V.] [Belouchi, Majid] [Fournier, Hélène] [Reinhard, Claudia] [Ding, Jun] [Li, Yun] [Tejasvi, Trilokraj] [Gudjonsson, Johann] [Stoll, Stefan W.] [Voorhees, John J.] [Lambert, Sylviane] [Weidinger, Stephan] [Eberlein, Bernadette] [Kunz, Manfred] [Rahman, Proton] [Gladman, Dafna D.] [Gieger, Christian] [Wichmann, H. Erich] [Karlsen, Tom H.] Mayr, Gabriele Albrecht, Mario [Kabelitz, Dieter] [Mrowietz, Ulrich] [Abecasis, Gonçalo R.] [Elder, James T.] [Schreiber, Stefan] [Weichenthal, Michael] [Franke, Andre] | Genome-wide association study identifies a psoriasis susceptibility locus at TRAF3IP2 In: Nature Genetics [42], 991-995 | Journal Article | D0C716A159F14C10C12577F10064A4F4-Albrecht2010j | | ||||||||
| | 2010 | | Emig, Dorothea Kacprowski, Tim Albrecht, Mario | [Nykter, Matti] [Ruusuvuori, Pekka] [Carlberg, Carsten] [Yli-Harja, Olli] | Measuring and analyzing tissue specificity of human genes and protein complexes In: Seventh International Workshop on Computational Systems Biology, WCSB 2010, 27-30 | Proceedings Article | 7E435FEA8DB4EDEAC1257753004F52DA-Albrecht2010g | | |||||
| 2010 | | Emig, Dorothea [Salomonis, Nathan] [Baumbach, Jan] Lengauer, Thomas [Conklin, Bruce R.] Albrecht, Mario | AltAnalyze and DomainGraph: analyzing and visualizing exon expression data In: Nucleic Acids Research [38], W755-W762 | Journal Article | BB04A4FED8B4814CC1257753004DA231-Albrecht2010f | | ||||||||
| | 2010 | | | Feuerbach, Lars Lengauer, Thomas | | | Ancestral germline methylation reconstruction of young repeats In: Transcription, chromatin structure and DNA repair in development and differentiation, 81 | Poster | 9AE98836BAB5CB60C125781600328D3E-Feuerbach2010_P2 | | |||
| 2010 | | Feuerbach, Lars Lyngsoe, Rune Lengauer, Thomas [Hein, Jotun] | | Comparative Epigenomiocs - Towards Ancestral Germline Methylome Reconstruction In: Abstracts of papers presented at the 2010 meeting on The Biology of genomes, 87 | Poster | 94EB8C94011BCD8DC125780700432126-Feuerbach2010P1 | | |||||||
| | 2010 | | [Franke, Andre] [Balschun, Tobias] [Sina, Christian] [Ellinghaus, David] [Häsler, Robert] Mayr, Gabriele Albrecht, Mario [Wittig, Michael] [Buchert, Eva] [Nikolaus, Susanna] [Gieger, Christian] [Wichmann, H. Erich] [Sventoraityte, Jurgita] [Kupcinskas, Limas] [Onnie, Clive M.] [Gazouli, Maria] [Anagnou, Nicholas P.] [Strachan, David] [McArdle, Wendy L.] [Mathew, Christopher G.] [Rutgeerts, Paul] [Vermeire, Séverine] [Vatn, Morten H.] [Krawczak, Michael] [Rosenstiel, Philip] [Karlsen, Tom H.] [Schreiber, Stefan] | | Genome-wide association study for ulcerative colitis identifies risk loci at 7q22 and 22q13 (IL17REL) In: Nature Genetics [42], 292-294 | Journal Article | C82D78E054979136C1257710006500D4-Albrecht2010c | | |||||
| 2010 | | Gatzmann, Fanny | GOdot Sequence - function prediction from protein sequence Universität des Saarlandes | Thesis - Bachelor thesis | C57116B0CD2838E7C1257834003CABD2-Gatzmann2010a | | ||||||||
| | 2010 | | [Gu, Hongcang] Bock, Christoph [Mikkelsen, Tarjei S.] [Jäger, Natalie] [Smith, Zachary D.] [Tomazou, Eleni] [Gnirke, Andreas] [Lander, Eric S.] [Meissner, Alexander] | | | Genome-scale DNA methylation mapping of clinical samples at single-nucleotide resolution In: Nature Methods [7], 133-136 | Journal Article | E833A5BFCF6FA3DEC12578180070CC67-GuBock2010 | | ||||
| 2010 | | [Harris, R. Alan] [Wang, Ting] [Coarfa, Cristian] [Nagarajan, Raman P.] [Hong, Chibo] [Downey, Sara L.] [Johnson, Brett E.] [Fouse, Shaun D.] [Delaney, Allen] [Zhao, Yongjun] [Olshen, Adam] [Ballinger, Tracy] [Zhou, Xin] [Forsberg, Kevin J.] [Gu, Junchen] [Echipare, Lorigail] [O'Geen, Heriette] [Lister, Ryan] [Pelizzola, Mattia] [Xi, Yuanxin] [Epstein, Charles B.] [Bernstein, Bradley E.] [Hawkins, R. David] [Ren, Bing] [Chung, Wen-Yu] [Gu, Hongcang] Bock, Christoph [Gnirke, Andreas] [Zhang, Michael Q.] [Haussler, David] [Ecker, Joseph R.] [Li, Wei] [Farnham, Peggy J.] [Waterland, Robert a.] [Meissner, Alexander] [Marra, Marco A.] [Hirst, Martin] [Milosavljevic, Aleksandar] [Costello, Joseph F.] | Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications In: Nature Biotechnology [28], 1097-1105 | Journal Article | 0648E026BF9E11A7C12578180071A2F2-Harris2010 | | ||||||||
| | 2010 | | Kacprowski, Tim | | Analysis of protein complexes and tissue-spedific expression Universität des Saarlandes | Thesis - Bachelor thesis | B4BCE6B8C551A688C1257834003C7821-Kacprowski2010a | | |||||
| 2010 | | König, Eva | Env-wide analysis of coreceptor determining sites and subtype-specific differences in HIV-1 Universität des Saarlandes | Thesis - Bachelor thesis | 6ECCCB669C8526F6C1257834003C90B7-König2010a | | ||||||||
| | 2010 | | [Lange, Christian Markus] Roomp, Kirsten [Dragan, Anette] [Nattermann, Jacob] [Michalk, Monika] [Spengler, Ulrich] [Weich, Viola] Lengauer, Thomas [Zeuzem, Stefan] [Berg, Thoma] [Sarrazin, Christoph] | | HLA class I allele associations with HCV genetic variants in patients with chronic HCV genotypes 1a or 1b infection In: Journal of Hepatology [53], 1022-1028 | Journal Article | C69F4B7D49F888A4C125781600407FB9-RoompLengauer2010b | | |||||
| 2010 | | Lengauer, Thomas Altmann, André Thielen, Alexander [Kaiser, Rolf] | Chasing the AIDS Virus In: Communications of the ACM [53], 66-74 | Journal Article | 0E40FB8CA35DB75AC12577AE004B77EC-Lengauer2010a | | ||||||||
| | 2010 | | [McGovern, Rachel A] Thielen, Alexander [Mo, Theresa] [Dong, Winnie] [Woods, Conan K] [Chapman, Douglass] [Lewis, Marilyn] [James, Ian] [Heera, Jayvant] [Valdez, Hernan] [Harrigan, P Richard] | | Population-based V3 genotypic tropism assay: a retrospective analysis using screening samples from the A4001029 and MOTIVATE studies In: AIDS [24], 2517-2525 | Journal Article | B2FB261FE4334D29C12577F8003F5A18-McGovern2010 | | |||||
| 2010 | | [Mihm, Ulrike] [Hofmann, W.P.] Welsch, Christoph [Polta, A.] Lengauer, Thomas [Zeuzem, Stefan] [Sarrazin, Christoph] [Herrmann, E.] | Effect of ribavirin on the frequency of RNAse L cleavage sites within the hepatitis C viral genome In: Journal of Viral Hepatitis [17], 217-221 | Journal Article | 44C3F1A370199AA8C1257815004F445D-lengauerwelsch2010 | | ||||||||
| | 2010 | | Ramírez, Fidel Albrecht, Mario | | Finding scaffold proteins in interactomes In: Trends in Cell Biology [20], 2-4 | Journal Article | 3AFEEED14604C277C12576A8004DABDF-Albrecht2010b | | |||||
| 2010 | Ramirez, Fidel | [Gomez Merino, Fernando Carlos] [Silva Rojas, Hilda Victoria] [Pérez Rodríguez, Paulino] | Tutorial Cytoscape In: Bioinformática: Aplicaciones a la genómica y proteómica, 73-98 | Part of a Book | A1F8029E7D5EE544C12578A700340831-Ramirez2010 | | ||||||||
| | 2010 | | [Rhee, Soo-Yon] [Margeridon-Thermet, Severin] [Nguyen, Mindie] [Liu, Tommy] [Kagan, Ron] Beggel, Bastian [Verheyen, Jens] [Kaiser, Rolf] [Shafer, Robert] | | | Hepatitis B virus reverse transcriptase sequence variant database for sequence analysis and mutation discovery In: Antiviral Research [88], 269-275 | Journal Article | 0C60170AB82A5380C12578000043E8AE-Rhee2010 | | ||||
| 2010 | | Schlicker, Andreas Albrecht, Mario | FunSimMat update: new features for exploring functional similarity In: Nucleic Acids Research [38], D244-D248 | Journal Article | DAF511CF50801FB1C12576A8004D6C05-Albrecht2010a | | ||||||||
| | 2010 | | Schlicker, Andreas Lengauer, Thomas Albrecht, Mario | | Improving disease gene prioritization using the semantic similarity of Gene Ontology terms In: Bioinformatics [26], i561-i567 | Journal Article | 888B9754E93E7CBEC12577AE004A6B9F-Albrecht2010d | | |||||
| 2010 | | Speicher, Nora K. | Network analysis of viral host factors Universität des Saarlandes | Thesis - Bachelor thesis | 81AACB94EC04F78EC125783400398AD7-Speicher2010 | | ||||||||
| | 2010 | | [Swenson, Luke C.] [Boehme, Richard] Thielen, Alexander [McGovern, Rachel A.] [Harrigan, P. Richard] | | Genotypic determination of HIV-1 tropism in the clinical setting In: HIV Therapy [4], 293-303 | Journal Article | 93B58E5C9242B82BC12577F800471EE8-Swenson2010a | | |||||
| 2010 | | [Swenson, Luke C.] [Moores, Andrew] [Low, Andrew J.] Thielen, Alexander [Dong, Winnie] [Woods, Conan] [Jensen, Mark A.] [Wynhoven, Brian] [Chan, Dennison] [Glascock, Christopher] [Harrigan, P. Richard] | Improved detection of CXCR4-using HIV by V3 genotyping: application of population-based and "deep" sequencing to plasma RNA and proviral DNA In: Journal of Acquired Immune Deficiency Syndromes [54], 506-510 | Journal Article | 264BFB2B4B6934CBC12577F800465B9C-Swenson2010 | | ||||||||
| | 2010 | | | Thielen, Alexander Lengauer, Thomas [Harrigan, P Richard] [Swenson, Luke] [Dong, Winnie WY] [McGovern, Rachel A] [Lewis, Marilyn] [James, Ian] [Heera, Jayvant] [Valdez, Hernan] | | | Mutations within GP41 are correlated with coreceptor tropism but do not substantially improve coreceptor usage prediction In: Reviews in Antiviral Therapy & Infectious Diseases, 47-47 | Poster | 4F1FE15C287FC3D4C12577A6002DAF29-Thielen2010EDRW | | |||
| 2010 | | Thielen, Alexander [Sichtig, Nadine] [Kaiser, Rolf] [Lam, Jeffrey] [Harrigan, P. Richard] Lengauer, Thomas | Improved prediction of HIV-1 coreceptor usage with sequence information from the second hypervariable loop of gp120 In: Journal of Infectious Diseases [202], 1435-1443 | Journal Article | A5D528631A982D6FC12577F8003DB985-Thielen2010 | | ||||||||
| | 2010 | | [Welker, Martin-Walter] [Welsch, Christoph] [Meyer, Aline] Antes, Iris Albrecht, Mario [Forestier, Nicole] [Kronenberger, Bernd] Lengauer, Thomas [Piiper, Albrecht] [Zeuzem, Stefan] [Sarrazin, Christoph] | | Dimerization of the hepatitis C virus nonstructural protein 4B depends on the integrity of an aminoterminal basic leucine zipper In: Protein Science [19], 1327-1336 | Journal Article | 89DF0070658FEC7AC1257753004D5D13-Albrecht2010e | | |||||
| 2010 | | [Wittkop, Tobias] Emig, Dorothea [Lange, Sita] [Rahmann, Sven] Albrecht, Mario [Morris, John H.] [Böcker, Sebastian] [Stoye, Jens] Baumbach, Jan | Partitioning biological data with transitivity clustering In: Nature Methods [7], 419-420 | Journal Article | FC4922CF38BD83EFC1257753004A9685-Wittkop2010 | | ||||||||
| | 2010 | | [Wohlers, Inken] Domingues, Francisco S. [Klau, Gunnar W.] | | Towards optimal alignment of protein structure distance matrices In: Bioinformatics [26], 2273-2280 | Journal Article | 73BDC324043F9E79C12577E7003F663C-Wohlers2010 | | |||||
| 2009 | | Adams, Ben McHardy, Alice [Lundegaard, C.] Lengauer, Thomas | Frishman, Dimitrij Valencia, Alfonso | Viral Bioinformatics In: Modern Genome Annotation - The BioSapiens Network, 429-452 | Part of a Book | F7F884E1485EA5ECC125758B002856FB-Lengauer2009x | | |||||||
| | 2009 | | [Alcaro, Stefano] [Artese, Anna] [Ceccherini-Silberstein, Francesca] [Ortuso, Francesca] [Perno, Carlo Federico] Sing, Tobias [Svicher, Valentina] | | Molecular Dynamics and Free Energy Studies on the Wild-Type and Mutated HIV-1 Protease Complexed with Four Approved Drugs: Mechanism of Binding and In: Journal of Chemical Information and Modeling [49], 1751-1761 | Journal Article | F143B7158EA481C7C12576F1004F849F-Becker2009 | | |||||
| 2009 | | Altmann, André [Däumer, Martin] [Beerenwinkel, Niko] [Peres, Yardena] [Schülter, Eugen] Büch, Joachim [Rhee, Soo-Yon] [Sönnerborg, Anders] [Fessel, W. Jeffrey] [Shafer, Robert W.] [Zazzi, Maurizio] [Kaiser, Rolf] Lengauer, Thomas | Predicting the Response to Combination Antiretroviral Therapy: Retrospective Validation of geno2pheno-THEO on a Large Clinical Database In: The Journal of Infectious Diseases [199], 999-1006 | Journal Article | 7437741FF0DD8974C125756000639546-Altmann2009JID | | ||||||||
| | 2009 | | Altmann, André Sing, Tobias [Vermeiren, Hans] [Winters, Bart] [Van Craenenbroeck, Elke] [Van der Borght, Koen] [Rhee, Soo-Yon] Shafer, Robert W. [Schülter, Eugen] [Kaiser, Rolf] [Peres, Yardena] [Sönnerborg, Anders] Fessel, W. Jeffrey [Incardona, Francesca] [Zazzi, Maurizio] [Bacheler, Lee] [Van Vlijmen, Hermann] Lengauer, Thomas | | Advantages of Predicted Phenotypes and Statistical Learning Models in Inferring Virological Response to Antiretroviral Therapy from HIV Genotype In: Antiviral Therapy [14], 273-283 | Journal Article | EC7EFA9EA38CD0D8C125756000644DA1-Altmann2009AVT | | |||||
| 2009 | | Blankenburg, Hagen [Finn, Robert D.] [Prlić, Andreas] [Jenkinson, Andrew M.] Ramírez, Fidel Emig, Dorothea Schelhorn, Sven-Eric Büch, Joachim Lengauer, Thomas Albrecht, Mario | DASMI: exchanging, annotating and assessing molecular interaction data In: Bioinformatics [25], 1321-1328 | Journal Article | B8DDEA6F0FE26990C12575EC0052FA94-Albrecht2009a | | ||||||||
| | 2009 | | Bock, Christoph | | | Epigenetic biomarker development In: Epigenomics [1], 99-110 | Journal Article | F24963B3C52A6770C12576B70007A61A-Bock2009 | | ||||
| 2009 | | Bock, Christoph Halachev, Konstantin Büch, Joachim Lengauer, Thomas | | EpiGRAPH: user-friendly software for statistical analysis and prediction of (epi)genomic data In: Genome Biology [10], R14.1-R14.14 | Journal Article | 02635734C5DA789AC1257574006AC7FF-Bock2009a | | |||||||
| | 2009 | | Ebert, Peter | | Computational Analysis of genomic HPV data Universität des Saarlandes | Thesis - Bachelor thesis | 5C6C75FED321B845C1257834003C573B-Ebert2009a | | |||||
| 2009 | | | Feuerbach, Lars Halachev, Konstantin Lengauer, Thomas Bock, Christoph | [Meijer, Gerrit] [Ried, Thomas] [Giaretti, Walter] [Hamilton, Peter] | | An exhaustive methode for CpG island annotation In: Special Issue: Abstracts of the 3rd MC-GARD Meeting, 146-146 | Poster | 1ED2DF87EA78FD77C12576B9003EE67E-Feuerbach2009_Poster1 | | |||||
| | 2009 | | [Frishman, Dmitrij] Albrecht, Mario Blankenburg, Hagen [Bork, Peer] [Harrington, Eoghan D.] [Hermjakob, Henning] [Jensen, Lars J.] [Juan, David A.] Lengauer, Thomas [Pagel, Philipp] [Schachter, Vincent] [Valencia, Alfonso] | [Frishman, Dmitrij] [Valencia, Alfonso] | Protein-protein interactions: analysis and prediction In: Modern Genome Annotation - The Biosapiens Network, 353-410 | Part of a Book | DB34312C982D374AC125752B007D3C31-Albrecht2008k | | |||||
| 2009 | | | [Harrigan, P Richard] [McGovern, Rachel] [Dong, Winnie] Thielen, Alexander [Jensen, Mark] [Mo, Theresa] [Chapman, Douglas] [Lewis, Marilyn] [James, Ian] [Valdez, Hernan] | | Screening for HIV tropism using population-based V3 genotypic analysis: a retrospective outcome analysis using stored plasma screening samples from MOTIVATE-1 In: Abstracts presented at the XVIII International HIV Drug Resistance Workshop : Basic Principles & Clinical Implications, A17-A17 | Poster | 64A182559A713DFEC12575D60045DC7B-Harrigan2009IDRW | | ||||||
| | 2009 | | Hartmann, Christoph Antes, Iris Lengauer, Thomas | | Docking and scoring with alternative side-chain conformations In: Proteins: Structure, Function, and Bioinformatics [74], 712-726 | Journal Article | BA30A24E54752F22C1257574005E599E-Hartmann2009 | | |||||
| 2009 | | [Kono, Ken] Bozek, Kasia Domingues, Francisco S. [Shioda, Tatsuo] [Nakayama, Emi E.] | Impact of a single amino acid in the variable region 2 of the Old World monkey TRIM5alpha SPRY (B30.2) domain on anti-human immunodeficiency virus type 2 activity In: Virology [388], 160-168 | Journal Article | 4DD2923739BBD81BC12576930044E44D-Kono2009 | | ||||||||
| | 2009 | | | [Lawyer, Glenn] [Ferkingstad, Egil] [Nesvåg, Rangan] [Varnäs, Katarina] [Agartz, Ingrid] | | | Local and covariate-modulated false discovery rates applied in neuroimaging In: NeuroImage [47], 213-219 | Journal Article | E02E9BB3E478AB20C12576A90031ABAD-Lawyer2009_lFDR | | |||
| 2009 | | | [Lawyer, Glenn] [Nesvåg, Ragnar] [Varnäs, Katarina] [Okugawa, Gaku] [Agartz, Ingrid] | | Grey and white matter proportional relationships in the cerebellar vermis altered in schizophrenia In: Cerebellum [8], 52-60 | Journal Article | 4D0EA9962092DADDC12576A90031CB28-Lawyer2009_cerebellum | | ||||||
| | 2009 | | Lengauer, Thomas Altmann, André Thielen, Alexander | | Bioinformatische Unterstützung der Auswahl von HIV Therapien In: Informatik Spektrum [32], 320-331 | Journal Article | E829702BEC6B3F80C12576B2004CD281-LengAltThie2009 | | |||||
| 2009 | | Lengauer, Thomas [Kaiser, Rolf] | Computerjagd auf das AIDSVIRUS In: Spektrum der Wissenschaft [08], 62-67 | Journal Article | 5C35B88E006B6094C12576B1004C2D7F-LengauerKaiser2009a | | ||||||||
| | 2009 | | Lengauer, Thomas [Sierra, S.] [Kaiser, Rolf] | | Resistenzbestimmung In: MMW Fortschritte in der Medizin [151], 74-75 | Journal Article | 88EC9D11AE99FBB2C12576B2004D2B87-LengKaiSie2009 | | |||||
| 2009 | | Mangels, Miriam | In Silico Models for the Prediction of Metabolism by Cytochrome P450 Enzymes Universität des Saarlandes | Thesis - Bachelor thesis | 3D3EC42C0128B08AC1257577003066B7-Mangels2009 | | ||||||||
| | 2009 | | [Mihm, Ulrike] [Ackermann, Oliver] Welsch, Christoph [Herrmann, Eva] [Hofmann, Wolf Peter] [Grigorian, Natalia] [Welker, Martin Walter] Lengauer, Thomas [Zeuzem, Stefan] [Sarrazin, Christoph] | | Clinical relevance of the 2'-5'-oligoadenylate synthetase/RNase L system for treatment response in chronic hepatitis C In: Journal of Hepatology [50], 49-58 | Journal Article | CECF1D8297B7B629C125757E004854C8-LengauerZeuzem2009 | | |||||
| 2009 | | [Moser, Dirk] [Ekawardhani, Savira] [Kumsta, Robert] [Palmason, Haukur] Bock, Christoph [Athanassiadou, Zoi] [Lesch, Klaus-Peter] [Meyer, Jobst] | | Functional Analysis of a Potassium-Chloride Co-Transporter 3 (SLC12A6) Promoter Polymorphism Leading to an Additional DNA Methylation Site In: Neuropsychopharmacology [34], 458-467 | Journal Article | 0BB2B1FF18801B6BC12575220079A4C8-Moser2009 | | |||||||
| | 2009 | | [Prosperi, Mattia C. F.] Altmann, André [Rosen-Zvi, Michal] [Aharoni, Ehud] [Gabor, Borgulya] [Fulop, Bazso] [Sonnerborg, Anders] [Schulter, Eugen] [Struck, Daniel] [Ulivi, Giovanni] [Vandamme, Anne-Mieke] [Vercauteren, Jurgen] [Zazzi, Maurizio] | | Investigation of expert rule bases, logistic regression, and non-linear machine learning techniques for predicting response to antiretroviral treatment In: Antiviral Therapy [14], 433-442 | Journal Article | 271301D850C81819C12576F10058EF9C-Altmann2009x | | |||||
| 2009 | Roomp, Kirsten [Rand, Jacquie] | Intensive blood glucose control is safe and effective in diabetic cats using home monitoring and treatment with glargine In: Journal of feline medicine and surgery [11], 668-682 | Journal Article | 21B5E1141E41E77BC12576F2002FDD73-Roomp2009 | | |||||||||
| | 2009 | | Schüffler, Peter [Mikeska, Thomas] [Waha, Andreas] Lengauer, Thomas Bock, Christoph | | | MethMarker: User-friendly design and optimization of gene-specific DNA methylation assays In: Genome Biology [10], R105:1-R105:10 | Journal Article | 311705DBDA6B650DC12576B7000806A7-Bock2009b | | ||||
| 2009 | [Sichtig, Nadine] [Sierra, Saleta] [Kaiser, Rolf] [Däumer, Martin] [Reuter, Stefan] [Schülter, Eugen] Altmann, André [Fätkenheuer, Gerd] [Dittmer, Ulf] [Pfister, Herbert] [Esser, Stefan] | Evolution of raltegravir resistance during therapy In: Journal of antimicrobial chemotherapy [64], 25-32 | Journal Article | 7CE5E87BAD4FE1D1C12576F20035CAE8-Sichtig2009 | | |||||||||
| | 2009 | | [Sos, Martin L.] [Michel, Kathrin] [Zander, Thomas] [Weiss, Jonathan] [Frommolt, Peter] [Pfeifer, Martin] [Li, Danan] [Ullrich, Roland] [Koker, Mirjam] [Fischer, Florian] [Shimamura, Takeshi] [Rauh, Daniel] [Mermel, Craig] [Fischer, Stefanie] [Stückrath, Isabel] [Heynck, Stefanie] [Beroukhim, Rameen] [Lin, William] [Winckler, Wendy] [Shah, Kinjal] [LaFramboise, Thomas] [Moriarty, Whei F.] Hanna, megan Tolosi, Laura [Rahnenführer, Jörg] [Verhaak, Roel] [Chiang, Derek] [Getz, Gad] [Hellmich, Martin] [Wolf, Jürgen] [Girard, Luc] [Peyton, Michael] [Weir, Barbara A.] [Chen, Tzu-Hsiu] [Greulich, Heidi] [Barretina, Jordi] [Shapiro, Geoffrey I.] [Garraway, Levi A.] [Gazdar, Adi F.] [Minna, John D.] [Meyerson, Matthew] [Wong, Kwok-Kin] [Thomas, Roman K.] | | Predicting drug susceptibility of non-small cell lung cancers based on genetic lesions In: Journal of Clinical Investigation [119], 1727-1740 | Journal Article | 1F98D2E30C8C5EACC12576F20037D14F-tolosi2009 | | |||||
| 2009 | | [Susser, Simone] Welsch, Christoph [Wang, Yalan] [Zettler, Markus] Domingues, Francisco S. [Karey, Ursula] [Hughes, Eric] [Ralston, Robert] [Tong, Xiao] [Herrmann, Eva] [Zeuzem, Stefan] [Sarrazin, Christoph] | Characterization of resistance to the protease inhibitor boceprevir in hepatitis C virus-infected patients. In: Hepatology [50], 1709-1718 | Journal Article | 5B7A2422265D4871C12576930046EDA1-Susser2009 | | ||||||||
| | 2009 | | | Thielen, Alexander Altmann, André Bogojeska, Jasmina [Kaiser, Rolf] Lengauer, Thomas | | | Estimating evolutionary pathways to 7CXCR4 usage from cross-sectional data In: Abstracts presented at the XVIII International HIV Drug Resistance Workshop : Basic Principles & Clinical Implications, A16-A16 | Poster | AB26A70926E54FE5C12575D60045204D-Thielen2009IDRW | | |||
| 2009 | | | Thielen, Alexander [Sichtig, Nadine] [Braun, Patrick] [Däumer, Martin] [Walter, Hauke] [Noah, Christian] [Wolf, Eva] [Müller, Harm] [Stürmer, Martin] Lengauer, Thomas [Kaiser, Rolf] [Obermeier, Martin] | | Performance of genotypic coreceptor measurement using geno2pheno[coreceptor] in B- and non-B HIV subtypes in a large cohort of therapy-experienced patients in Germany In: Reviews in Antiviral Therapy, 99-99 | Poster | 2772CF0E7A49F03FC12575D600461462-Thielen2008EDRW | | ||||||
| | 2009 | | [Trignetti, Maria] Sing, Tobias [Svicher, Valentina] [Santoro, Maria Mercedes] [Forbici, Federica] [D'Arrigo, Roberta] [Bellocchi, Maria Concetta] [Santoro, Mario] [Marconi, Patrizia] [Zaccarelli, Mauro] [Trotta, Maria Paola] [Bellagamba, Rita] [Narciso, Pasquale] [Antinori, Andrea] Lengauer, Thomas [Perno, Carlo Federico] [Ceccherini-Silberstein, Francesca] | | Dynamics of NRTI resistance mutations during therapy interruption In: AIDS Research and Human Retroviruses [25], 57-64 | Journal Article | 82264AE469BC0230C125757E00489F64-LengauerSing2009 | | |||||
| 2009 | Weimann, Aaron | Using multidimensional Scaling for visualizing similarities of proteins Universität des Saarlandes | Thesis - Bachelor thesis | FC590D081D76D925C1257834003BC247-Weimann2009a | | |||||||||
| | 2008 | | | Altmann, Andre [Rosen-Zvi, Michal] [Prosperi, Mattia] [Aharoni, Ehud] [Neuvirth, Hani] [Schülter, Eugen] Büch, Joachim [Peres, Yardena] [Incardona, Incardona] [Sönnerborg, Anders] [Kaiser, Rolf] [Zazzi, Maurizio] Lengauer, Thomas | | | The EuResist approach for predicting response to anti HIV-1 therapy In: Reviews in Antiviral Therapy, 107 | Poster | 37BB8F81589204E4C1257546004DB142-Altmann2008EDRW | | |||
| 2008 | Altmann, Andre [Rosen-Zvi, Michal] [Prosperi, Mattia] [Aharoni, Ehud] [Neuvirth, Hani] [Sönnerborg, Anders] [Schülter, Eugen] Büch, Joachim [Struck, Daniel] [Peres, Yardena] [Incardona, Francesca] [Kaiser, Rolf] [Zazzi, Maurizio] Lengauer, Thomas | Comparison of Classifier Fusion Methods for Predicting Response to Anti HIV-1 Therapy In: PLoS ONE [3], e3470 | Journal Article | 4014325E58E801B4C125750D006D87CB-Altmann2008a | | |||||||||
| | 2008 | | Assenov, Yassen Ramírez, Fidel Schelhorn, Sven-Eric Lengauer, Thomas Albrecht, Mario | | Computing topological parameters of biological networks In: Bioinformatics [24], 282-284 | Journal Article | 670864261729C824C12573D00042B9FE-Albrecht2008b | | |||||
| 2008 | Bickel, Steffen Bogojeska, Jasmina Lengauer, Thomas Sheffer, Tobias | [McCallum, Andrew] [Roweis, Sam] | | Multi-Task Learning for HIV Therapy Screening In: Proceedings, Twenty-Fifth International Conference on Machine Learning, 56-63 | Proceedings Article | ECFE258759FA0F00C1257512004D71B6-Bickel_icml_2008 | | |||||||
| | 2008 | | Bock, Christoph | | IVF: stars may have to consider the risk of stolen parenthood In: Nature [454], 938 | Journal Article | D4D5075C9DF488A1C125752200792941-Bock2008d | | |||||
| 2008 | Bock, Christoph Lengauer, Thomas | | Computational epigenetics In: Bioinformatics [24], 1-10 | Journal Article | 566DD9F499693093C12573B600592976-Bock2008a | | ||||||||
| | 2008 | | Bock, Christoph [Walter, Jörn] [Paulsen, Martina] Lengauer, Thomas | | | Inter-individual variation of DNA methylation and its implications for large-scale epigenome mapping In: Nucleic Acids Research [36], e55 | Journal Article | 869594111BDC2511C125752200786FA4-Bock2008c | | ||||
| 2008 | Bogojeska, Jasmina Alexa, Adrian Altmann, André Lengauer, Thomas [Rahnenführer, Jörg] | | Rtreemix: an R package for estimating evolutionary pathways and genetic progression scores In: Bioinformatics [24], 2391-2392 | Journal Article | 6B37EB33694127E1C125751200507021-Bogojeska_trees_2008 | | ||||||||
| | 2008 | | Bogojeska, Jasmina Lengauer, Thomas [Rahnenführer, Jörg] | | Stability analysis of mixtures of mutagenetic trees In: BMC Bioinformatics [9], 165-181 | Journal Article | 6E2FC2E922E7046BC1257546004D255A-Bogojeska_bmc_2008 | | |||||
| 2008 | | Däumer, Martin [Kaiser, Rolf] [Klein, Rolf] Lengauer, Thomas [Thiele, Bernhard] Thielen, Alexander | | Inferring viral tropism from genotype with massively parallel sequencing; qualitative and quantitative analysis In: Antiviral Therapy, A101 | Poster | 7A5A4B81CE5E4662C1257546004D1B3C-Daumer2008 | | |||||||
| | 2008 | | Emig, Dorothea [Cline, Melissa S.] [Klein, Karsten] [Kunert, Anne] [Mutzel, Petra] Lengauer, Thomas Albrecht, Mario | | Integrative visual analysis of the effects of alternative splicing on protein domain interaction networks In: Journal of Integrative Bioinformatics [5], 101-115 | Journal Article | E6694E00F56CAED8C125752B005F119D-Albrecht2008h | | |||||
| 2008 | Emig, Dorothea [Cline, Melissa S.] Lengauer, Thomas Albrecht, Mario | Integrating expression data with domain interaction networks In: Bioinformatics [24], 2546-2548 | Journal Article | 7CAE6B7AD3EA1068C125752B007C89F2-Albrecht2008j | | |||||||||
| | 2008 | | Emig, Dorothea [Klein, Karsten] [Kunert, Anne] [Mutzel, Petra] Albrecht, Mario | | Visualizing domain interaction networks and the impact of alternative splicing events In: Proceedings of the 5th International Conference on BioMedical Visualization (MediVis): Information Visualization in Medical and Biomedical Informatics, 36-43 | Proceedings Article | 060DE047371600D7C125752B005E9DE7-Albrecht2008g | | |||||
| 2008 | [Franke, Andre] [Balschun, Tobias] [Karlsen, Tom H.] [Sventoraityte, Jurgita] [Nikolaus, Susanna] Mayr, Gabriele Domingues, Francisco S. Albrecht, Mario [Nothnagel, Michael] [Ellinghaus, David] [Sina, Christian] [Onnie, Clive M.] [Weersma, Rinse K.] [Stokkers, Pieter C. F.] [Wijmenga, Cisca] [Gazouli, Maria] [Strachan, David] [McArdle, Wendy L.] [Vermeire, Séverine] [Rutgeers, Paul] [Rosenstiel, Philip] [Krawczak, Michael] [Vatn, Morten H.] [IBSEN study group, the] [Mathew, Christopher G.] [Schreiber, Stefan] | Sequence variants in IL10, ARPC2, and multiple other loci contribute to ulcerative colitis In: Nature Genetics [40], 1319-1323 | Journal Article | AE4207758495F4CFC125752B0064899F-Albrecht2008i | | |||||||||
| | 2008 | | [Hornstein, Max] [Hoffmann, Michele J.] Alexa, Adrian [Yamanaka, Masanori] [Müller, Mirko] [Jung, Volker] [Rahnenführer, Jörg] [Schulz, Wolfgang A.] | | Protein phosphatase and TRAIL receptor genes as new candidate tumor genes on chromosome 8p in prostate cancer In: Cancer Genomics & Proteomics [5], 123-136 | Journal Article | 445F5D1505484E6DC125755C0043F15D-HornsteinAlexa2008 | | |||||
| 2008 | [Jenkinson, Andrew M.] Albrecht, Mario [Birney, Ewan] Blankenburg, Hagen [Down, Thomas] [Finn, Robert D.] [Hermjakob, Henning] [Hubbard, Tim J. P.] [Jimenez, Rafael C.] [Jones, Philip] [Kähäri, Andreas] [Kulesha, Eugene] [Macías, José R.] [Reeves, Gabrielle A.] [Prlić, Andreas] | Integrating biological data - the Distributed Annotation System In: BMC Bioinformatics [9], S3.1-7 | Journal Article | 9AA8F9DAE2673611C125752B005DA191-Albrecht2008f | | |||||||||
| | 2008 | | Kircher, Martin Bock, Christoph Paulsen, Martina | | | Structural conservation versus functional divergence of maternally expressed microRNAs in the Dlk1/Gtl2 imprinting region In: BMC Genomics [9], 346 | Journal Article | CF6496BFA2CCEF63C1257574006C2B42-Kircher2008 | | ||||
| 2008 | [Lisurek, Michael] [Simgen, Birgit] Antes, Iris [Bernhardt, Rita] | Theoretical and Experimental Evaluation of a CYP106A2 Low Homology Model and Production of Mutants with Changed Activity and Selectivity of Hydroxylation In: ChemBioChem [9], 1439-1449 | Journal Article | B064E709880DB2DFC125757400605CAB-Antes2008b | | |||||||||
| | 2008 | | [Lucas, Simon] [Heim, Ralph] [Negri, Matthias] Antes, Iris [Ries, Christina] [Schewe, Katarzyna E.] [Bisi, Alessandra] [Gobbi, Silvia] [Hartmann, Rolf W.] | | Novel Aldosterone Synthase Inhibitors with Extended Carbocyclic Skeleton by a Combined Ligand-Based and Structure-Based Drug Design Approach In: Journal of Medical Chemistry [51], 6138-6149 | Journal Article | 78D9F65839D5084EC1257574005F9FD8-Antes2008a | | |||||
| 2008 | | [Moores, Andrew] Thielen, Alexander [Dong, Winnie] Low, Andrew J. [Woods, Conan] [Jensen, Mark] [Wynhoven, Brian] [Chan, Dennison] [Glascock, Christopher] [Harrigan, P Richard] | | Improved detection of X4 virus by V3 genotyping: application to plasma RNA and proviral DNA In: Antiviral Therapy, A99 | Poster | 332CEC0F53742872C1257546004C2537-Moores2008 | | |||||||
| | 2008 | | Müller, Fabian | | Inferring virological response to antiretroviral combination therapy based on past treatment lines Universität des Saarlandes | Thesis - Bachelor thesis | 199C39DC7E056E83C1257560006E9CA1-FMueller2008_bachelor | | |||||
| 2008 | | [Obermeier, Martin] [Berg, Thomas] [Sichtig, Nadine] [Braun, Patrick] [Däumer, Martin] [Walter, Hauke] [Noah, Christian] [Wolf, Eva] [Müller, Harm] [Stürmer, Martin] Thielen, Alexander [Kaiser, Rolf] | | Determination of HIV-1 co-receptor usage in German patients – comparison of genotypic methods with the TROFILE® phenotypic assay In: Abstracts of the Ninth International Congress on Drug Therapy in HIV Infection, 123 | Poster | 56E99F0A8B46ACDFC1257546004BB273-Obermeier2008Glasgow | | |||||||
| | 2008 | | | [Obermeier, Martin] [Sichtig, Nadine] [Braun, Patrick] [Däumer, Martin] [Walter, Hauke] [Noah, Christian] [Wolf, Eva] [Müller, Harm] [Stürmer, Martin] [Kaiser, Rolf] Thielen, Alexander | | | Determination of HIV-1 coreceptor usage in German patients - comparison of genotypic methods with the TROFILE phenotypic assay In: Antiviral Therapy, A112 | Poster | B7E944E818C62C9BC1257546004C1D91-Obermeier2008 | | |||
| 2008 | Perner, Juliane | | Semi-Supervised Learning for Predicting Anti-HIV Drug Resistance Universität des Saarlandes | Thesis - Bachelor thesis | 1AADE81DE28F2C0DC1257560006AB91E-Perner2008_bachelor | | ||||||||
| | 2008 | | [Rosen-Zvi, Michal] Altmann, Andre [Prosperi, Mattia] [Aharoni, Ehud] [Neuvirth, Hani] [Sönnerborg, Anders] [Schülter, Eugen] [Struck, Daniel] [Peres, Yardena] [Incardona, Francesca] [Kaiser, Rolf] [Zazzi, Maurizio] Lengauer, Thomas | | Selecting anti-HIV therapies based on a variety of genomic and clinical factors In: Proceedings of the 16th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB 2008), i399-406 | Proceedings Article | 2B507EB7E868B673C125750D006E9FD1-Rosen2008a | | |||||
| 2008 | | [Rosen-Zvi, Michal] [Schülter, Eugen] Altmann, Andre [Sierra-Aragon, Saleta] [Zazzi, Maurizio] [Sönnerborg, Anders] [Oette, Mark] Lengauer, Thomas [Kaiser, Rolf] | | Sustaining lamivudine/emtricitabine, abacavir, zidovudine or atazanavir from a previous treatment shows a clinical benefit In: Antiviral Therapy, A86 | Poster | 5013764FF226D126C1257546004D668F-RosenZvi2008IDRW | | |||||||
| | 2008 | | Saigo, Hiroto [Tsuda, Koji] | [Giannotti, Fosca] [Gunopulos, Dimitrios] | Iterative Subgraph Mining for Principal Component Analysis. In: Proceedings of the IEEE International Conference on Data Mining (ICDM2008), DM934 | Proceedings Article | BBDA67E6A3D20574C1257505005B12B0-Saigo2008a | | |||||
| 2008 | | Sander, Oliver Altmann, Andre Lengauer, Thomas | | Computational analysis of covariation and interactions between HIV-1 reverse transcriptase and Integrase In: Reviews in Antiviral Therapy, 113-114 | Poster | F1EAE2F281181DFCC1257546004DE259-Sander2008EDRW | | |||||||
| | 2008 | | Sander, Oliver Domingues, Francisco S. Zhu, Hongbo Lengauer, Thomas Sommer, Ingolf | [Brazma, Alvis] [Miyano, Satoru] [Akutsu, Tatsuya] | Structural descriptors of protein-protein binding sites In: Proceedings of 6th Asia-Pacific Bioinformatics Conference, 79-88 | Proceedings Article | D9FA9F827F5FBCBFC1257505004EAE44-Sander2008 | | |||||
| 2008 | Schelhorn, Sven-Eric Lengauer, Thomas Albrecht, Mario | An integrative approach for predicting interactions of protein regions In: Bioinformatics [24], i35-i41 | Journal Article | B2A0CDBC092DA893C125752C0001A4CB-Albrecht2008l | | |||||||||
| | 2008 | | Schlicker, Andreas Albrecht, Mario | | | FunSimMat: a comprehensive functional similarity database In: Nucleic Acids Research [36], D434-D439 | Journal Article | 4EC5F9537DF4FB41C12573AE0054CD3A-Albrecht2008a | | ||||
| 2008 | [Sierra, Saleta] [Kaiser, Rolf] Thielen, Alexander [Sander, Oliver] Lengauer, Thomas | [Jäger, Hans] | Genotypic Analysis of HIV Co-Receptor Usage In: Entry Inhibitoren - Neue Formen der HIV-Therapie, 31-39 | Part of a Book | D68D899D381A5EB8C12575390057C0FB-Jaeger2008 | | ||||||||
| | 2008 | | Stöckel, Daniel | | Protein Surface Remeshing and Characterisation Using Morse-Smale Complexes Universität des Saarlandes | Thesis - Bachelor thesis | 57F525EB6D8B6AB4C12575770030C1B0-Stöckel2008 | | |||||
| 2008 | | Thielen, Alexander [Harrigan, P Richard] Low, Andrew J. [Moores, A] Altmann, Andre Bozek, Kasia [Heger, Eva] [Sichtig, Nadine] [Kaiser, Rolf] Lengauer, Thomas | | Improved genotypic prediction of HIV-1 coreceptor usage by incorporating V2 loop sequence variation In: Antiviral Therapy, A100 | Poster | BEAA728733F44A08C1257546004C2DEB-Thielen2008IDRW | | |||||||
| | 2008 | | | Thielen, Alexander [Kaiser, Rolf] Lengauer, Thomas | | | Improving HIV-1 coreceptor usage prediction from genotype with regions outside of V3 In: Reviews in Antiviral Therapy, 81-82 | Poster | 4843DD090896EC33C1257546004CFEC0-Thielen2008Entry | | |||
| 2008 | [Van Ooijen, Gerben] Mayr, Gabriele Albrecht, Mario [Cornelissen, Ben J. C.] [Takken, Frank L. W.] | Transcomplementation, but not physical association of the CC-NB-ARC and LRR domains of tomato R protein Mi-1.2 is altered by mutations in the ARC2 subdomain In: Molecular Plant [1], 401-410 | Journal Article | FC599FCE9BC04296C125752B005C7B6D-Albrecht2008e | | |||||||||
| | 2008 | | [Van Ooijen, Gerben] Mayr, Gabriele [Kasiem, Mobien M. A.] Albrecht, Mario [Cornelissen, Ben J. C.] [Takken, Frank L. W.] | | Structure-function analysis of the NB-ARC domain of plant disease resistance proteins In: Journal of Experimental Botany [59], 1383-1397 | Journal Article | 0FBA1B919C6CF49CC125752B005BDD22-Albrecht2008d | | |||||
| 2008 | | [Verheyen, Jens] Altmann, Andre [Knops, Elena] [Schülter, Eugen] [Sichtig, Nadine] [Reuter, Stefan] [Fätkenheuer, Gerd] [Pfister, Herbert] [Kaiser, Rolf] | | Relevance of HIV gag cleavage site mutations in failures of protease inhibitor therapies In: Antiviral Therapy, A53 | Poster | FE2CB8C044329BBBC1257546004E0BC3-Verheyen2008a | | |||||||
| | 2008 | | [Watson, James D.] [Thornton, Janet M.] [Tress, Michael L.] [Lopez, Gonzalo] [Valencia, Alfonso] [Redfern, Oliver] [Orengo, Christine A.] Sommer, Ingolf Domingues, Francisco S. | [Frishman, Dmitrij] [Valencia, Alfonso] | Structure to function In: Modern Genome Annotation, 239-262 | Part of a Book | 843DE257F52B80DDC1257538005AA749-DominguesS2008 | | |||||
| 2008 | Weinhold, Nils Sander, Oliver Domingues, Francisco S. Lengauer, Thomas Sommer, Ingolf | | Local function conservation in sequence and structure space In: PLoS Computational Biology [4], e1000105 | Journal Article | 2DB9481E41B4192BC12575300071D22D-Weinhold2008 | | ||||||||
| | 2008 | | [Welsch, Christoph] Domingues, Francisco S. [Susser, Simone] Antes, Iris Hartmann, Christoph Mayr, Gabriele Schlicker, Andreas [Sarrazin, Christoph] Albrecht, Mario [Zeuzem, Stefan] Lengauer, Thomas | | | Molecular basis of telaprevir resistance due to V36 and T54 mutations in the NS3-4A protease of HCV In: Genome Biology [9], R16 | Journal Article | 8D6DA765556D9EC0C12573DD004C440B-Albrecht2008c | | ||||
| 2008 | Zhu, Hongbo Sommer, Ingolf Lengauer, Thomas Domingues, Francisco S. | | Alignment of Non-Covalent Interactions at Protein-Protein Interfaces In: PLoS ONE [3], e1926 | Journal Article | 76B6F10503CD3F49C12575050048B89A-Zhu2008 | | ||||||||
| | 2008 | | Zotenko, Elena Mestre, Julian [O'Leary, Dianne] [Przytycka, Teresa] | | Why Do Hubs in the Yeast Protein Interaction Network Tend To Be Essential: Reexamining the Connection between the Network Topology and Essentiality In: PLoS Computational Biology [4], e1000140 | Journal Article | 677027344BF2FDD5C12575140058B930-Zotenko2008 | | |||||
| 2007 | [Ahlenstiel, G.] Roomp, Kirsten Däumer, Martin [Nattermann, T.] [Vogel, M.] [Rockstroh, J.K.] Beerenwinkel, Niko Kaiser, R. [Nischalke, H.-D.] [Sauerbruch, T.] Lengauer, Thomas [Spengler, U.] | | Selective pressures of HLA genotypes and antiviral therapy on human immunodeficiency virus type 1 sequence mutation at a population level In: Clinical and Vaccine Immunology [14], 1266-1273 | Journal Article | F5B1B958FA534882C12573CC0037989E-Lengauer2007s | | ||||||||
| | 2007 | | Altmann, Andre [Beerenwinkel, Niko] Sing, Tobias Savenkov, Igor [Däumer, Martin] [Kaiser, Rolf] [Rhee, Soo-Yon] [Fessel, W Jeffrey] [Shafer, Robert W] Lengauer, Thomas | | Improved prediction of response to antiretroviral combination therapy using the genetic barrier to drug resistance In: Antiviral Therapy [12], 169-178 | Journal Article | 6640B953DA2CDA2DC1257288005464A4-Altmann2007 | | |||||
| 2007 | | Altmann, Andre [Däumer, Martin] Sing, Tobias [Beerenwinkel, Niko] [Walter, Hauke] [Kaiser, Rolf] Lengauer, Thomas | | Validation of geno2pheno and THEO on a large independent clinical dataset In: Proceedings of the 5th European HIV Drug Resistance Workshop, - | Poster | 229EDDA6EDABC51AC12572A4005AAEC8-Altmann2007b | | |||||||
| | 2007 | | | Altmann, Andre Sing, Tobias [Vermeiren, Hans] [Winters, Bart] [Van Craenenbroeck, Elke] [Van der Borght, Koen] [Rhee, Soo-Yon] [Shafer, Robert W] [Schülter, Eugen] [Kaiser, Rolf] [Peres, Yardena] [Sonnerborg, Anders] [Fessel, W Jeffrey] [Incardona, Francesca] [Zazzi, Maurizio] [Bacheler, Lee] [Van Vlijmen, Hermann] Lengauer, Thomas | | | Inferring virological response from genotype: with or without predicted phenotypes? In: Proceedings of the 16th International HIV Drug Resistance Workshop, S169 | Poster | 06E374FBD11AB30AC125750F006362ED-Altmann2007IDRW | | |||
| 2007 | Blankenburg, Hagen | A Distributed Annotation System for Molecular Interactions Ruprecht Karl Universität Heidelberg; Universität Heilbronn | Thesis - other | 5D01A18EF50F1EAFC12572C2003D2FFA-Blankenburg2007a | | |||||||||
| | 2007 | | Bock, Christoph Lengauer, Thomas | | | Computational Epigenetics: Bioinformatik für neue Wege in der Krebsforschung In: Jahrbuch 2007, 271-277 | Part of a Book | 4D533C96B4244D8FC12573B600598A8B-Bock2007c | | ||||
| 2007 | Bock, Christoph [Walter, Jörn] [Paulsen, Martina] Lengauer, Thomas | | CpG Island Mapping by Epigenome Prediction In: PLoS Computational Biology [3], 1055-1070 | Journal Article | A437CEAF7C1978E0C12573B60058087C-Bock2007a | | ||||||||
| | 2007 | | [Ceccherini-Silberstein, Francesca] [Svicher, Valentina] Sing, Tobias [Artese, Anna] [Santoro, Maria Mercedes] [Forbici, Federica] [Bertoli, Ada] [Alcaro, Stefano] [Palamara, Guido] [Monforte, Antonella d'Arminio] [Balzarini, Jan] [Antinori, Andrea] Lengauer, Thomas [Perno, Carlo Federico] | | | Characterization and structural analysis of novel mutations in human immunodeficiency virus type 1 reverse transcriptase involved in the regulation of restistance to nonnucleoside inhibitors In: Journal of Virology [81], 11507-11519 | Journal Article | 142B4822A3CC878EC12573CC003737EA-Lengauer2007r | | ||||
| 2007 | Domingues, Francisco S. Lengauer, Thomas | Lengauer, Thomas | Inferring Protein Function from Protein Structure In: Bioinformatics - From Genomes to Therapies 3. The Holy Grail: Molecular Function, 1211-1252 | Part of a Book | 81BEEB27E2842CFAC12572A4005F749F-S.Domingues2006 | | ||||||||
| | 2007 | | Domingues, Francisco S. [Rahnenführer, Jörg] Lengauer, Thomas | | Conformational analysis of alternative protein structures In: Bioinformatics [23], 3131-3138 | Journal Article | D54541FD31C7CFFFC12573B7004EF1B3-Domingues2007b | | |||||
| 2007 | | Emig, Dorothea | | The Impact of Alternative Splicing on Protein Interaction Networks Eberhard Karls Universität Tübingen | Thesis - other | 4C4F0825332514A8C12572C2003D09E3-Emig2007a | | |||||||
| | 2007 | | [Flockerzi, Aline] Maydt, Jochen [Frank, Oliver] [Ruggieri, Alessia] [Maldener, Esther] [Seifarth, Wolfgang] [Medstrand, Patrik] Lengauer, Thomas [Meyerhans, Andreas] [Leib-Mosch, Christine] [Meese, Eckart] [Mayer, Jens] | | | Expression pattern analysis of transcribed HERV sequences is complicated by ex vitvo recombination In: Retrovirology [4], 39 | Journal Article | ED32C45DA204D1ABC12573CC00359BE8-Lengauer2007m | | ||||
| 2007 | [Franke, Andre] [Hampe, Jochen] [Rosenstiel, Philip] [Becker, Christoph] [Wagner, Florian] [Häsler, Robert] [Little, Randall D.] [Huse, Klaus] [Ruether, Andreas] [Balschun, Tobias] [Wittig, Michael] [ElSharawy, Abdou] Mayr, Gabriele Albrecht, Mario [Prescott, Natalie J.] [Onnie, Clive M.] [Fournier, Hélène] [Keith, Tim] [Radelof, Uwe] [Platzer, Matthias] [Mathew, Christopher G.] [Stoll, Monika] [Krawczak, Michael] [Nürnberg, Peter] [Schreiber, Stefan] | Systematic association mapping identifies NELL1 as a novel IBD disease gene In: PLoS ONE [2], e691.1-13 | Journal Article | EE184396B344ECB1C125733D0066E0B4-Albrecht2007h | | |||||||||
| | 2007 | | [Hampe, Jochen] [Franke, Andre] [Rosenstiel, Philip] [Till, Andreas] [Teuber, Markus] [Huse, Klaus] Albrecht, Mario Mayr, Gabriele [De La Vega, Francisco M.] [Briggs, Jason] [Günther, Simone] [Prescott, Natalie J.] [Onnie, Clive M.] [Häsler, Robert] [Sipos, Bence] [Fölsch, Ulrich R.] Lengauer, Thomas [Platzer, Matthias] [Mathew, Christopher G.] [Krawczak, Michael] [Schreiber, Stefan] | | A genome-wide association scan of nonsynonymous SNPs identifies a susceptibility variant for Crohn disease in ATG16L1 In: Nature Genetics [39], 207-211 | Journal Article | D974ADE8F150F765C125725F00324C1A-Albrecht2007a | | |||||
| 2007 | Hartmann, Christoph Antes, Iris Lengauer, Thomas | | IRECS: A new algorithm for the selection of most probable ensembles of side-chain conformations in protein models. In: Protein Science [16], 1294-1307 | Journal Article | 8BD3BCE9CBA1676FC12573AE0055F3FC-Hartmann2007 | | ||||||||
| | 2007 | | [Hofmann, Wolf Peter] [Fernandez, B.] [Herrmann, E.] Welsch, Christoph [Mihm, Ulrike] [Kronenberg, B.] [Feldmann, G.] [Spengler, U.] [Zeuzem, Stefan] [Sarrazin, Christoph] | | Somatic hypermutation and mRNA expression levels of the BCL-6 gene in patients with hepatitis C virus-associated lymphoproliferative diseases In: Journal of Viral Hepatitis [14], 484-491 | Journal Article | 3357BDBE182186F3C12573EE004DB399-HofmannFernandez2007 | | |||||
| 2007 | [Hofmann, Wolf Peter] Welsch, Christoph [Takahashi, Yoshitomo] [Miyajima, Hiroaki] [Mihm, Ulrike] [Krick, Christoph] [Zeuzem, Stefan] [Sarrazin, Christoph] | Identification and in silico characterization of a novel compound heterozygosty associated with hereditary aceruloplasminemia In: Scandinavian Journal of Gastroenterology [42], 1088-1094 | Journal Article | F677193A3AAE8DAEC12573EE004A1E79-HofmannWelsch2007 | | |||||||||
| | 2007 | | Kämper, Andreas [Rognan, Didier] Lengauer, Thomas | Lengauer, Thomas | Lead Identification by Virtual Screening In: Bioinformatics - From Genomes to Therapies 2. Getting at the Inner Workings: Molecular Interactions, 651-704 | Part of a Book | D10CCE81246C3C7BC12572A0007601D6-Kaemper2007a | | |||||
| 2007 | [Ketter, Ralf] [Kim, Yoo-Jin] [Storck, Simone] Rahnenführer, Jörg [Romeike, Bernd F.M.] [Steudel, Wolf-Ingo] [Zang, Klaus D.] [Henn, Wolfram] | | Hyperdiploidy defines a distinct cytogenetic entity of meningiomas In: Journal of Neuro-Oncology [83], 213-221 | Journal Article | 8BC307E4CA74179CC12572830032D2F0-Rahnenfuehrer2007d | | ||||||||
| | 2007 | | [Ketter, Ralf] [Urbschat, Steffi] [Henn, Wolfram] [Feiden, Wolfgang] Beerenwinkel, Niko Lengauer, Thomas [Steudel, Wolf-Ingo] [Zang, Klaus D.] Rahnenführer, Jörg | | Application of oncogenetic trees mixtures as a biostatistical model of the clonal cytogenetic evolution of meningiomas In: International Journal of Cancer [121], 1473-1480 | Journal Article | 6F05BC872276EA60C12573CC0035E75E-Lengauer2007n | | |||||
| 2007 | [Kupfer, Bernd] Sing, Tobias Schüffler, Peter [Hall, Rabea] [Kurz, Ralf] [McKeown, Astrid] [Schneweis, Karl-Eduard] [Eberl, Wolfgang] [Oldenburg, Johannes] [Brackmann, Hans H.] [Rockstroh, Jürgen K.] [Spengler, Ulrich] Däumer, Martin [Kaiser, Rolf] Lengauer, Thomas [Matz, Bertfried] | Fifteen years of env C2V3C3 evolution in six individuals clonally infected with human immunodeficiency virus type 1 In: Journal of Medical Virology [79], 1629-1639 | Journal Article | 8105876EA25132C5C12573CC00369295-Lengauer2007p | | |||||||||
| | 2007 | | | Lengauer, Thomas | Bioinformatics - From Genomes to Therapies 1. The Building Blocks: Molecular Sequences and Structures | Book | 29A4907E743B1520C1257282002FE4F4-LengauerBioInf1_2007 | | |||||
| 2007 | Lengauer, Thomas | Bioinformatics - From Genomes to Therapies 2. Getting at the Inner Workings: Molecular Interactions | Book | A07CE1B99D30022BC1257295002A730C-LengauerBioInf2_2007 | | |||||||||
| | 2007 | | | Lengauer, Thomas | Bioinformatics - From Genomes to Therapies 3. The Holy Grail: Molecular Function | Book | 9F324F7233F7882BC1257295002AECE4-LengauerBioInf3_2007 | | |||||
| 2007 | Lengauer, Thomas | Bullinger, H.J. | Bioinformatik In: Technologiefüher - Grundlagen, Anwendungen, Trends, 4 | Part of a Book | 2CC2BC612BC0A326C125758B00266F9F-Lengauer2007m2 | | ||||||||
| | 2007 | | Lengauer, Thomas | Lengauer, Thomas | Future Trends In: Bioinformatics - From Genomes to Therapies 3. The Holy Grail: Molecular Function, 1651-1687 | Part of a Book | 0003227F797FE751C12572AA0045CD00-Lengauer2007g | | |||||
| 2007 | Lengauer, Thomas | Lengauer, Thomas | Introduction In: Bioinformatics - From Genomes to Therapies 1. The Building Blocks: Molecular Sequences and Structures, 1-24 | Part of a Book | CA345234DACD8EF2C125729C005F6205-Lengauer2007k | | ||||||||
| | 2007 | | | Lengauer, Thomas [Oette, M.] [Selbig, J.] [Hoffmann, D.] [Poggensee, G.] [Hamouda, O.] [Häussinger, D.] [Kaiser, R.] | European Journal of Medical Research | Journal | 2159B4F2933FEF12C125757E0042998E-Lengauer-Genafor2007 | | |||||
| 2007 | Lengauer, Thomas | Reuse, Bernd Vollmar, Roland | Strategiekonzept "Molekulare Bioinformatik" In: Informatikforschung in Deutschland, 9 | Part of a Book | 7C2285D75037174DC125758B0026B988-Lengauer2007n2 | | ||||||||
| | 2007 | | | Lengauer, Thomas [Rost, B.] [Schuster, P.] | Proceedings ISMB2007 | Proceedings | 9006B80A682A13CCC125757E0042ED8C-LengauerISMB2007 | | |||||
| 2007 | Lengauer, Thomas Sander, Oliver [Sierra, Saleta] Thielen, Alexander [Kaiser, Rolf] | Bioinformatics prediction of HIV coreceptor usage In: Nature Biotechnology [25], 1407-1410 | Journal Article | 724EF9DDD7A57106C12573EE0054A8AA-LengauerSander2007 | | |||||||||
| | 2007 | | [Liu, Fang] [Tostesen, Eivind] [Sundet, Jostein K.] [Jenssen, Tor-Kristian] Bock, Christoph [Jerstad, Geir Ivar] [Thilly, William G.] [Hovig, Eivind] | | | The human genomic melting map In: PLoS Computational Biology [3], e93 | Journal Article | 27A694853F3231F9C12573B60058ACFF-Liu2007 | | ||||
| 2007 | [Low, Andrew J.] [Dong, Winnie] [Chan, Dennison] Sing, Tobias [Swanstrom, Ronald] [Jensen, Mark] [Pillai, Satish] [Good, Benjamin] [Harrigan, P. Richard] | Current V3 genotyping algorithms are inadequate for predicting X4 co-receptor usage in clinical isolates In: AIDS [21], F19-F26 | Journal Article | 53AA5AF477BC1753C12573EF0036C141-LowDong2007 | | |||||||||
| | 2007 | | Mayr, Gabriele Domingues, Francisco S. [Lackner, Peter] | | | Comparative Analysis of Protein Structure Alignments In: BMC Structural Biology [7], 1 | Journal Article | 030C8CE914708DEEC12573410030C043-Mayr2007 | | ||||
| 2007 | [Mikeska, Thomas] Bock, Christoph [El-Maarri, Osman] [Hübner, Anika] [Ehrentraut, Denise] [Schramm, Johannes] [Felsberg, Jörg] [Kahl, Philip] [Büttner, Reinhard] [Pietsch, Torsten] [Waha, Andreas] | | Optimization of Quantitative MGMT Promoter Methylation Analysis Using Pyrosequencing and Combined Bisulfite Restriction Analysis In: Journal of Molecular Diagnostics [9], 368-381 | Journal Article | 0BD54D660C7D6362C12573B600561477-Mikeska2007 | | ||||||||
| | 2007 | | Rahnenführer, Jörg Lengauer, Thomas | Lengauer, Thomas | Analysis of Expression Data: Classification of genes In: Bioinformatics - From Genomes to Therapies 2. Getting at the Inner Workings: Molecular Interactions, 993-1021 | Part of a Book | 3535883977EED76CC12572350041DE29-Rahnenfuehrer2007a | | |||||
| 2007 | Ramírez, Fidel Schlicker, Andreas Assenov, Yassen Lengauer, Thomas Albrecht, Mario | Computational analysis of human protein interaction networks In: Proteomics [7], 2541-2552 | Journal Article | F39051B501D10BF0C12572D4007551AD-Albrecht2007e | | |||||||||
| | 2007 | | Roomp, Kirsten | Lengauer, Thomas | Evolution of Drug Resistance in HIV In: Bioinformatics - From Genomes to Therapies 3. The Holy Grail: Molecular Function, 1457-1496 | Part of a Book | 8C113E0BE09FE69EC12572A00076C8EA-Roomp2007d | | |||||
| 2007 | [Salamat-Miller, Nazila] [Fang, Jianwen] [Seidel, Christopher W.] Assenov, Yassen Albrecht, Mario [Middaugh, C. Russell] | | A network-based analysis of polyanion-binding proteins utilizing human protein arrays In: Journal of Biological Chemistry [282], 10153-10163 | Journal Article | 60CAD5331BBAFC99C125728300811585-Albrecht2007b | | ||||||||
| | 2007 | | Sander, Oliver Sing, Tobias Sommer, Ingolf [Low, Andrew J.] [Cheung, Peter K.] [Harrigan, P. Richard] Lengauer, Thomas Domingues, Francisco S. | | | Structural Descriptors of gp120 V3 Loop for the Prediction of HIV-1 Coreceptor Usage In: PLoS Computational Biology [3], 555-564 | Journal Article | 9809883503D11D5DC12572A500529A60-Sander2007 | | ||||
| 2007 | [Scheller, Nicoletta] [Resa-Infante, Patricia] [de la Luna, Susana] [Galao, Rui Pedro] Albrecht, Mario [Kaestner, Lars] [Lipp, Peter] Lengauer, Thomas [Meyerhans, Andreas] [Díez, Juana] | Identification of PatL1, a human homolog to yeast P body component Pat1 In: Biochimica et Biophysica Acta - Molecular Cell Research [1773], 1786-1792 | Journal Article | E2C1F50D3451B929C12573C4007196AF-Albrecht2007j | | |||||||||
| | 2007 | | Schlicker, Andreas Huthmacher, Carola Ramírez, Fidel Lengauer, Thomas Albrecht, Mario | | | Functional evaluation of domain-domain interactions and human protein interaction networks In: Bioinformatics [23], 859-865 | Journal Article | 282D69580783155EC12572CD003217A5-Albrecht2007g | | ||||
| 2007 | [Schulz, Wolfgang A.] Alexa, Adrian [Jung, Volker] [Hader, Christiane] [Hoffmann, Michele J.] [Yamanaka, Masanori] [Fritzsche, Sandy] [Wlazlinski, Agnes] [Müller, Mirko] Lengauer, Thomas [Engers, Rainer] [Florl, Andrea R.] [Wullich, Bernd] Rahnenführer, Jörg | | Factor interaction analysis for chromosome 8 and DNA methylation alterations highlights innate immune response suppression and cytoskeletal changes in prostate cancer In: Molecular Cancer [6], 1-16 | Journal Article | 166A4F8357E560AEC125728300314719-Rahnenfuehrer2007c | | ||||||||
| | 2007 | | [Sierra, Saleta] [Kaiser, Rolf] Thielen, Alexander Lengauer, Thomas | | | Genotypic coreceptor analysis. In: European Journal of Medical Research [12], 453-462 | Journal Article | 8AC29E21245612FCC12573AF005181FB-Sierra2006 | | ||||
| 2007 | Sing, Tobias [Beerenwinkel, Niko] | [Schölkopf, B] [Platt, J.] [Hoffman, T.] | | Mutagenetic tree Fisher kernel improves prediction of HIV drug resistance from viral genotype In: Advances in Neural Information Processing Systems 19, 1-9 | Proceedings Article | 845535906AEB88E6C12572880055BEE4-SingNIPS2006 | | |||||||
| | 2007 | | Sing, Tobias Low, Andrew J. Beerenwinkel, Niko Sander, Oliver [Cheung, Peter K.] Domingues, Francisco S. Büch, Joachim [Däumer, Martin] [Kaiser, Rolf] Lengauer, Thomas [Harrigan, P. Richard] | | Predicting HIV coreceptor usage on the basis of genetic and clinical covariates In: Antiviral Therapy [12], 1097-1106 | Journal Article | 041B87421EE2D602C12573AF003CAC93-Sing2007 | | |||||
| 2007 | [Skrabal, Katharina] [Low, Andrew J.] [Dong, Winnie] Sing, Tobias [Cheung, Peter K.] [Mammano, Fabrizio] [Harrigan, P. Richard] | | Determining human immunodeficiency virus coreceptor use in a clinical setting: Degree of correlation between two phenotypic assays and a bioinformatic model In: Journal of Clinical Microbiology [45], 279-284 | Journal Article | 16F66204BFF3713AC12573F000379CE4-Skrabal2007 | | ||||||||
| | 2007 | | [Söderhäll, Cilla] [Marenholz, Ingo] [Kerscher, Tamara] [Rüschendorf, Franz] [Esparza-Gordillo, Jorge] [Worm, Margitta] [Gruber, Christoph] Mayr, Gabriele Albrecht, Mario [Rohde, Klaus] [Schulz, Herbert] [Wahn, Ulrich] [Hubner, Norbert] [Lee, Young-Ae] | | | Variants in a novel epidermal collagen gene (COL29A1) are associated with atopic dermatitis In: PLoS Biology [5], e242.1952-1961 | Journal Article | 9A06CA15FA9B247EC125736E00810EE4-Albrecht2007i | | ||||
| 2007 | Sommer, Ingolf | Lengauer, Thomas | Protein Fold Recognition Based on Distant Homologs In: Bioinformatics - From Genomes to Therapies 1. The Building Blocks: Molecular Sequences and Structures, 351-388 | Part of a Book | DD2B0D60C8252EC0C12572840039A3F3-Sommer2007 | | ||||||||
| | 2007 | | Sommer, Ingolf Müller, Oliver Domingues, Francisco S. Sander, Oliver [Weickert, Joachim] Lengauer, Thomas | | Moment invariants as shape recognition technique for comparing protein binding sites In: Bioinformatics [23], 3139-3146 | Journal Article | E97BFCB320EFE5A0C12573B7004FFFA9-Sommer2007b | | |||||
| 2007 | Steffen, Andreas [Karasz, Maximilian] [Thiele, Carolin] Lengauer, Thomas Kämper, Andreas [Wenz, Gerhard] [Apostolakis, Joannis] | Combined similarity and QSPR virtual screening for guest molecules of $\beta$-cyclodextrin In: New Journal of Chemistry [31], 1941-1949 | Journal Article | 392501E3C679F87BC12573CC0037E0C1-Lengauer2007t | | |||||||||
| | 2007 | | Steffen, Andreas [Thiele, Carolin] [Tietze, Simon] [Strassnig, Christian] Kämper, Andreas Lengauer, Thomas [Wenz, Gerhard] [Apostolakis, Joannis] | | Improved cyclodextrin-based receptors for camptothecin by inverse virtual screening In: Chemistry [13], 6801-6809 | Journal Article | 1CFB006514B6855FC12573CC0036EEB8-Lengauer2007q | | |||||
| 2007 | [Tress, Michael L.] [Martelli, Pier L.] [Frankish, Adam] [Reeves, Gabrielle A.] [Wesselink, Jan J.] [Yeats, Corin] [Ólason, Páll Í.] Albrecht, Mario [Hegyi, Hedi] [Giorgetti, Alejandro] [Raimondo, Domenico] [Lagarde, Julien] [Laskowski, Roman A.] [López, Gonzalo] [Sadowski, Michael I.] [Watson, James D.] [Fariselli, Piero] [Rossi, Ivan] [Nagy, Alinda] [Kai, Wang] [Størling, Zenia] [Orsini, Massimiliano] Assenov, Yassen Blankenburg, Hagen Huthmacher, Carola Ramírez, Fidel Schlicker, Andreas [Denoued, France] [Jones, Phil] [Kerrien, Samuel] [Orchard, Sandra] [Antonarakis, Stylianos E.] [Reymond, Alexandre] [Birney, Ewan] [Brunak, Søren] [Casadio, Rita] [Guigo, Roderic] [Harrow, Jennifer] [Hermjakob, Henning] [Jones, David T.] Lengauer, Thomas [Orengo, Christine A.] [Patthy, László] [Thornton, Janet M.] [Tramontano, Anna] [Valencia, Alfonso] | | The implications of alternative splicing in the ENCODE protein complement In: Proceedings of the National Academy of Sciences [104], 5495-5500 | Journal Article | 67A2E9CA60FAAE03C12572A4003BF017-Albrecht2007c | | ||||||||
| | 2007 | | [Welker, Martin W.] [Hofmann, Wolf-Peter] [Welsch, Christoph] [von Wagner, Michael] [Herrmann, Eva] [Lengauer, Thomas] [Zeuzem, Stefan] [Sarrazin, Christoph] | | Correlation nonstructural (NS)4B amino acid variations with initial viral kinetics during interferon-alpha-based therapy in HCV-1b-infected patients In: Journal of Viral Hepatitis [14], 338-349 | Journal Article | AE2F483D6BAC6BDAC12572AD0056CE4D-Lengauer2006f | | |||||
| 2007 | Welsch, Christoph Albrecht, Mario Maydt, Jochen [Herrmann, E.] [Welker, M.W.] [Sarrazin, C.] [Scheidig, A.] Lengauer, Thomas Zeuzem, S. | Structural and functional comparison of the non-structural protein 4B of flaviviridae In: Journal of Molecular Graphics and Modeling [26], 546-557 | Journal Article | 2B2A8CF5725520BFC12573CC00362FEE-Lengauer2007o | | |||||||||
| | 2007 | | | [Zazzi, Maurizio] [Aharoni, Ehud] [Altmann, Andre] [Baszó, Fulop] [Bidgood, Penny] [Borgulya, Gabór] [Denholm-Prince, J] [Fielder, M] [Kaiser, Rolf] [Kent, Carmel] [Lengauer, Thomas] [Nepusz, T] [Neuvirth, Hanni] [Peres, Yardena] [Petroczi, Andrea] [Prosperi, Mattia] [Romano, L] [Rosen-Zvi, Michal] [Schülter, Eugen] Sing, Tobias [Sonnerborg, Andras] [Thompson, R] [Ulivi, G] [Zalány, L] [Incardona, Francesca] | | | EuResist: exploration of multiple modeling techniques for prediction of response to treatment In: Proceedings of the 5th European HIV Drug Resistance Workshop, - | Poster | E8F15D6C7ABEB932C12572A400591305-ZazziEU2006 | | |||
| 2006 | Albrecht, Mario [Takken, Frank L. W.] | Update on the domain architectures of NLRs and R proteins In: Biochemical and Biophysical Research Communications [339], 459-462 | Journal Article | AFD5E7A8E3460BABC12570AD0073BA73-Albrecht2006a | | |||||||||
| | 2006 | | Alexa, Adrian Rahnenführer, Jörg Lengauer, Thomas | | | Improved Scoring of Functional Groups from Gene Expression Data by Decorrelating GO Graph Structure In: Bioinformatics [22], 1600-1607 | Journal Article | FBB39D7F605386EBC125714F00524A67-Alexa2006a | | ||||
| 2006 | | Antes, Iris Lengauer, Thomas | | Refinement of homology modeled protein structures for molecular docking In: Proceedings of the 367. WE-Heraeus Seminar on Biomolecular Simulations, 1 | Poster | 7A3931A0038F2395C12572AA004DADE7-Antes2006d | | |||||||
| | 2006 | | Antes, Iris Siu, Shirley Weng-In Lengauer, Thomas | | | DynaPred: A structure and sequence based method for the prediction of MHC class I binding peptide sequence and conformations In: Bioinformatics [22], 16-24 | Journal Article | 0448A6813ACA376EC125725F0030563D-Lengauer2007e | | ||||
| 2006 | Bock, Christoph | Bioinformatik: Neue Strategien gegen Krebs In: Deutsches Ärzteblatt PRAXiS [103], 10-11 | Journal Article | 958705F282F85B42C125721F006DD978-Bock2006d | | |||||||||
| | 2006 | | Bock, Christoph Halachev, Konstantin Lengauer, Thomas | [Haasis, Klaus] [Heinzl, Armin] [Klumpp, Dieter] | Bioinformatisches Data Mining erschließt neue Strategien gegen Krebs In: Aktuelle Trends in der Softwareforschung, 91-99 | Part of a Book | 43DB95386BE68E88C125721F006D7E4D-Bock2006c | | |||||
| 2006 | Bock, Christoph [Hesser, Jürgen] | | Analysis and Prediction of Helix Shift Errors in Homology Modeling In: In Silico Biology [6], 131-145 | Journal Article | CBE92F0326A260EEC12571EE00403070-Bock2006a | | ||||||||
| | 2006 | | [Boeddrich, Annett] [Gaumer, Sébastien] [Haacke, Annette] [Tzvetkov, Nikolay] Albrecht, Mario [Evert, Bernd O.] [Müller, Eva C.] [Lurz, Rudi] [Breuer, Peter] [Schugardt, Nancy] [Plaßmann, Stephanie] [Xu, Kexiang] [Warrick, John M.] [Suopanki, Jaana] [Wüllner, Ullrich] [Frank, Ronald] [Hartl, Ulrich F.] [Bonini, Nancy M.] [Wanker, Erich E.] | | An arginine/lysine-rich motif is crucial for VCP/p97-mediated modulation of ataxin-3 fibrillogenesis In: EMBO Journal [25], 1547-1558 | Journal Article | 4ED11F9CF875526CC125713A0067DB36-Albrecht2006e | | |||||
| 2006 | | Frings, Oliver | | Development of a Smith-Waterman-Like Multi-Aspect Alignment Tool Universität des Saarlandes | Thesis - Bachelor thesis | 855991181C76D134C12572960032BB68-Frings2006a | | |||||||
| | 2006 | | | Glaab, Enrico | | | On the predictability of CpG methylation in human tissue at single basepair resolution Universität des Saarlandes | Thesis - Bachelor thesis | 63853424A0750367C12572960030D8AE-Glaab2006a | | |||
| 2006 | [Heckmann-Pohl, Dorothee M.] [Bastian, Sabine] [Altmeier, S.] Antes, Iris | Improvement of the fungal enzyme pyranose 2-oxidase using protein engineering In: Journal of Biotechnology [124], 26-40 | Journal Article | B6033010DA0DF8E4C125729D00575467-Antes2006b | | |||||||||
| | 2006 | | [Heil, Burkhard] [Ludwig, Jost] [Lichtenberg-Fraté, Hella] Lengauer, Thomas | | Computational recognition of potassium channel sequences In: Bioinformatics [13], 1562-1568 | Journal Article | 2DDC20F0E256D1E8C125725F002FF200-Lengauer2006b | | |||||
| 2006 | | Hobler, Anna | | Docking of monosaccharids into the wild type and mutants of pyranose 2-oxidase Universität des Saarlandes | Thesis - Bachelor thesis | 35FEA36A1FEEF674C12572AA0049ED23-Hobler2006 | | |||||||
| | 2006 | | Huthmacher, Carola | | Decomposing Protein Networks Into Domain-Domain Interactions Eberhard Karls University Tübingen | Thesis - other | 4459D5336D4C3480C12572960033D7A7-Huthmacher2006a | | |||||
| 2006 | | Jung, Holger | | Yamada Analyzer - A tool for fast calculation of genomic attributes Universität des Saarlandes | Thesis - Bachelor thesis | AAE4B627977D216DC125729600312EE1-Jung2006a | | |||||||
| | 2006 | | Kämper, Andreas [Apostolakis, Joannis] [Rarey, Matthias] [Marian, Christel Maria] Lengauer, Thomas | | Fully Automated Flexible Docking of Ligands into Flexible Synthetic Receptors Using Forward and Inverse Docking Strategies In: Journal of Chemical Information and Modeling [46], 903-911 | Journal Article | BF5F1BA2A334D543C125722000467E5F-Kaemper2006a | | |||||
| 2006 | [Lehmann, Clara] [Däumer, Martin] [Bousaad, Ibrahim] Sing, Tobias [Beerenwinkel, Niko] Lengauer, Thomas [Schmeisser, Norbert] [Wyen, Christoph] [Fätkenheuer, Gerd] [Kaiser, Rolf] | Stable coreceptor usage of HIV in patients with ongoing treatment failure on HAART In: Journal of Clinical Virology [37], 300-304 | Journal Article | 82595EA0165C7592C125725F00318E9C-Lengauer2006g | | |||||||||
| | 2006 | | Lengauer, Thomas Domingues, F.S. Sommer, Ingolf Zhu, Hongbo | | Analysis and prediction of protein-protein-interaction types In: BMC Bioinformatics [7], - | Journal Article | 0D81DB07A9DBFF75C125757E0045F53E-LengauerZhu2006 | | |||||
| 2006 | Lengauer, Thomas Sing, Tobias | Bioinformatics-assisted anti-HIV therapy In: Nature Reviews Microbiology [4], 790-797 | Journal Article | 88596D9D3AAEC2DEC1257289005E58AD-LengauerNatRev2006 | | |||||||||
| | 2006 | | Maydt, Jochen Lengauer, Thomas | | Recco: recombination analysis using cost optimization In: Bioinformatics [22], 1064-1071 | Journal Article | 578C261B341CEC59C125721E0048F0B9-Maydt2006 | | |||||
| 2006 | [Mihm, Ulrike] [Grigorian, Natalia] [Welsch, Christoph] [Herrmann, Eva] [Kronenberger, Bernd] [Teuber, Gerlinde] [von Wagner, Michael] [Hofmann, Wolf-Peter] Albrecht, Mario Lengauer, Thomas [Zeuzem, Stefan] [Sarrazin, Christoph] | Amino acid variations in hepatitis C virus p7 and sensitivity to antiviral combination therapy with amantadine in chronic hepatitis C In: Antiviral Therapy [11], 507-519 | Journal Article | 1639C4F59D7B872FC125713A00674A4B-Albrecht2006d | | |||||||||
| | 2006 | | [Neumann, Dirk] [Kohlbacher, Oliver] [Merkwirth, Christian] Lengauer, Thomas | | A Fully Computational Model for Predicting Percutaneous Drug Absorption In: Journal of Chemical Information and Modeling [1], 424-429 | Journal Article | 8AE53C81163A6135C1257289003128A2-Lengauer2006c | | |||||
| 2006 | | [Neumann, Dirk] [Kohlbacher, Oliver] [Merkwirth, Christian] Lengauer, Thomas | | Prediction of percutaneous drug absorption In: Journal of Chemical Information and Modeling [1], 424-429 | Journal Article | EE2EAF4B66F26F58C125725F002F0452-Lengauer2006h | | |||||||
| | 2006 | | | Pfeifer, Susanne | | | Development of a fast geometry-based screening compound prefiltering technique Universität des Saarlandes | Thesis - Bachelor thesis | 371BAEC477CE63EBC12572960033598C-Pfeifer2006a | | |||
| 2006 | [Plotz, Guido] [Welsch, Christoph] [Giron-Monzon, Luis] [Friedhoff, Peter] Albrecht, Mario [Piiper, Albrecht] Biondi, Ricardo M. Lengauer, Thomas [Zeuzem, Stefan] [Raedle, Jochen] | | Mutations in the MutSalpha interaction interface of MLH1 can abolish DNA mismatch repair In: Nucleic Acids Research [34], 6574-6586 | Journal Article | BE71BD82A60A15E8C125723700639C8E-Albrecht2006f | | ||||||||
| | 2006 | | | Reimer, Daniela | | | Docking studies to investigate the effect of correlated mutations in the HIV-Protease on the drug resistance of HIV Universität des Saarlandes | Thesis - Bachelor thesis | 561CB0E0DFF75613C12572AA00495197-Reimer2006 | | |||
| 2006 | Roomp, Kirsten Beerenwinkel, Niko Sing, Tobias [Schülter, Eugen] Büch, Joachim [Sierra-Aragon, Saleta] [Däumer, Martin] [Hoffmann, Daniel] [Kaiser, Rolf] Lengauer, Thomas [Selbig, Joachim] | Arevir: A Secure Platform for Designing Personalized Antiretroviral Therapies Against HIV In: Lecture Notes in Computer Science [4075], 185-194 | Journal Article | 236FC044A3DD67ADC125729D006059AE-Roomp2006 | | |||||||||
| | 2006 | | [Salamat-Miller, Nazila] [Fang, Jianwen] [Seidel, Christopher W.] [Smalter, Aaron M.] [Assenov, Yassen] Albrecht, Mario [Middaugh, C. Russell] | | A network-based analysis of polyanion-binding proteins utilizing yeast protein arrays In: Molecular and Cellular Proteomics [5], 2263-2278 | Journal Article | 371AA66FB90A20D3C125723700640167-Albrecht2006g | | |||||
| 2006 | Schlicker, Andreas Huthmacher, Carola Ramírez, Fidel Lengauer, Thomas Albrecht, Mario | [Huson, Daniel] [Kohlbacher, Oliver] [Lupas, Andrei] [Nieselt, Kay] [Zell, Andreas] | Functional evaluation of domain-domain interactions and human protein interaction networks In: German Conference on Bioinformatics (GCB 2006), 115-126 | Proceedings Article | D2C0097D30CFFE37C12571F600452604-Albrecht2006h | | ||||||||
| | 2006 | | Sing, Tobias Sander, Oliver Beerenwinkel, Niko Lengauer, Thomas | | ROCR: Visualizing classifier performance in R In: Bioinformatics [21], 3940-3941 | Journal Article | 1736103E284F0410C1256FB700563EA9-Sing2005a | | |||||
| 2006 | Steffen, Andreas Kämper, Andreas Lengauer, Thomas | Flexible Docking of Ligands into Synthetic Receptors Using a Two-Sided Incremental Construction Algorithm In: Journal of Chemical Information and Modeling [46], 1695-1703 | Journal Article | 2557F3C93029E81DC125722000475A67-Steffen2006a | | |||||||||
| | 2006 | | Steffen, Andreas Kämper, Andreas Lengauer, Thomas | [Turner, Anthony P. F.] | Virtual screening for guest molecules of a biosensor In: Biosensors 2006: The ninth world congress on biosensors, O66 | Proceedings Article | EA72D67C13348E47C12572200049DFF2-Steffen2006b | | |||||
| 2006 | [Svicher, Valentina] Sing, Tobias [Santoro, Maria Mercedes] [Forbici, Federica] [Rodriguez- Barrios, Fátima] [Bertoli, Ada] [Beerenwinkel, Niko] [Bellocchi, Maria Concetta] [Gago, Federigo] [d´Arminio Monforte, Antonella] [Antinori, Andrea] Lengauer, Thomas Ceccherini-Silberstein, Francesca [Perno, Carlo-Federico] | Involvement of novel HIV-1 reverse transcriptase mutations in the regulation of resistance to nucleoside inhibitors In: Journal of Virology [80], 7186-7198 | Journal Article | 5C6C3E3FFF4AC205C125725F002F44C0-Lengauer2006d | | |||||||||
| | 2006 | | Takken, Frank L. W. Albrecht, Mario [Tameling, Wladimir I.] | | Resistance proteins: molecular switches of plant defence In: Current Opinion in Plant Biology [9], 383-390 | Journal Article | 8EB4E2D106B8DB00C125713A0066CB86-Albrecht2006c | | |||||
| 2006 | Talwar, Priti Lengauer, Thomas [Wittmann, Christoph] [Velagapudi, V. R.] [Heinzle, Elmar] | Development of Computational Methods for Analysis of Metabolic Profiling Data In: Proceedings of International Conference on Systems Biology (ICSB 2006), Japan, 42-42 | Proceedings Article | 5DDFFCF98626AD83C125728B0046DEF3-Talwar2006 | | |||||||||
| | 2006 | | [Tameling, Wladimir I.] [Vossen, Jack H.] Albrecht, Mario Lengauer, Thomas [Berden, Jan A.] [Haring, Michel A.] [Cornelissen, Ben J.C.] Takken, Frank L. W. | | Mutations in the NB-ARC domain of I-2 that impair ATP hydrolysis cause autoactivation In: Plant Physiology [140], 1233-1245 | Journal Article | 6189458FCBA1325CC125713A00666DDC-Albrecht2006b | | |||||
| 2006 | | [Torda, Andrew E.] Lengauer, Thomas | | | Editorial: Selection of papers of the German Conference of Bioinformatics (GCB) 2005 In: Bioinformatics [22], 1 | Journal Article | E0238BE3F7BA2558C12572B1002A1DF7-Lengauer2007 | | ||||||
| | 2006 | | [Velagapudi, Vidya R.] [Wittmann, Christoph] Lengauer, Thomas Talwar, Priti [Heinzle, Elmar] | | Metabolic high- content screening of Saccharomyces cerevisiae reveals superior performance of single gene deletion strains In: Process Biochemistry [41], 2170-2179 | Journal Article | 458FA384DA613DFFC125725F003141D4-Lengauer2006e | | |||||
| 2006 | [Verheyen, Jens] [Litau, Elena] Sing, Tobias [Däumer, Martin] [Balduin, Melanie] [Oette, Mark] [Fätkenheuer, Gerd] [Rockstroh, Jürgen K.] [Schuldenzucker, Ulrike] [Hoffmann, Daniel] [Pfister, Herbert] [Kaiser, Rolf] | Compensatory mutations at the HIV cleavage sites p7/p1 and p1/p6-gag in therapy-naive and therapy-experienced patients In: Antiviral Therapy [11], 879-887 | Journal Article | A60C60D13305BA05C12573F500540CD9-Verheyen2006 | | |||||||||
| | 2006 | | [Voets, Marieke] Antes, Iris [Scherer, Christiane] [Müller-Vieira, Ursula] [Biemel, Klaus] [Marchais-Oberwinkler, Sandrine] [Hartmann, Rolf W.] | | Synthesis and evaluation of heteroaryl substituted dihydronaphthalenes and indenes: potent and selective inhibitors of aldosterone synthase (CYP11B2) for the treatment of congestive heart failure and myocardial fibrosis In: Journal of Medicinal Chemistry [49], 2222-2231 | Journal Article | 9B7785D875F7E532C12570DF00470070-Antes2006a | | |||||
| 2006 | [Yin, Junming] [Beerenwinkel, Niko] Rahnenführer, Jörg Lengauer, Thomas | | Model Selection for Mixtures of Mutagenetic Trees In: Statistical Applications in Genetics and Molecular Biology [5], Article 17 | Journal Article | 7E0C9F42BD91FB39C12570500035F600-Yin05 | | ||||||||
| | 2006 | | | Zimmer, Tobias | | | Functional Site Scaffolds Universität des Saarlandes | Thesis - Bachelor thesis | 3E9F8182F867646FC12572960033A223-Zimmer2006a | | |||
| 2005 | Albrecht, Mario | LRRK2 mutations and parkinsonism In: The Lancet [365], 1230 | Journal Article | 3D945435331E66CEC1256FB6005D0468-Albrecht2005d | | |||||||||
| | 2005 | | Albrecht, Mario [Choubey, Divaker] Lengauer, Thomas | | The HIN domain of IFI-200 proteins consists of two OB folds In: Biochemical and Biophysical Research Communications [327], 679-687 | Journal Article | 95E4179095D17476C1256F8E006BF032-Albrecht2005a | | |||||
| 2005 | Albrecht, Mario Huthmacher, Carola [Tosatto, Silvio C.E.] Lengauer, Thomas | Decomposing protein networks into domain-domain interactions In: Bioinformatics [21], ii220-ii221 | Journal Article | 6FEFB19344DA33D5C1257011003C3BC1-Albrecht2005j | | |||||||||
| | 2005 | | Antes, Iris Merkwirth, Christian Lengauer, Thomas | | POEM: Parameter Optimization using Ensemble Methods: Application to target specific scoring functions In: Journal of Chemical Information and Modeling [45], 1291-1302 | Journal Article | 3D90C9D05A1C54FFC12570DF00469A3C-Antes2005d | | |||||
| 2005 | [Balduin, Melanie] Beerenwinkel, Niko [Sierra, Saleta] [Däumer, Martin] [Rockstroh, Jürgen] [Oette, Mark] [Fätkenheuer, Gerd] [Kupfer, Bernd] [Hoffmann, Daniel] [Selbig, Joachim] [Pfister, Herbert] [Kaiser, Rolf] | Evolution of HIV resistance during treatment interruption in experienced patients and after restarting a new therapy In: J Clin Virol [34], 277-287 | Journal Article | 7F34919126E4BE27C1257281003F92EA-Beerenwinkel2005e | | |||||||||
| | 2005 | | Beerenwinkel, Niko [Däumer, Martin] Sing, Tobias Rahnenführer, Jörg Lengauer, Thomas [Selbig, Joachim] [Hoffmann, Daniel] [Kaiser, Rolf] | | Estimating HIV evolutionary pathways and the genetic barrier to drug resistance In: The Journal of Infectious Diseases [191], 1953-1960 | Journal Article | DC798072DC8C0384C1256F8D0062E86C-Beerenwinkel2005c | | |||||
| 2005 | Beerenwinkel, Niko Rahnenführer, Jörg [Däumer, Martin] [Hoffmann, Daniel] [Kaiser, Rolf] [Selbig, Joachim] Lengauer, Thomas | Learning multiple evolutionary pathways from cross-sectional data In: Journal of Computational Biology [12], 584-598 | Journal Article | 02BEC84E01D10E34C1256F8D006219FA-Beerenwinkel2005a | | |||||||||
| | 2005 | | Beerenwinkel, Niko Rahnenführer, Jörg [Kaiser, Rolf] [Hoffmann, Daniel] [Selbig, Joachim] Lengauer, Thomas | | Mtreemix: a software package for learning and using mixture models of mutagenetic trees In: Bioinformatics [21], 2106-2107 | Journal Article | 4C564AAE738324A8C1256F8D006254C9-Beerenwinkel2005b | | |||||
| 2005 | [Beerenwinkel, Niko] Sing, Tobias Lengauer, Thomas Rahnenführer, Jörg Roomp, Kirsten Savenkov, Igor [Fischer, Roman] [Hoffmann, Daniel] [Selbig, Joachim] [Korn, Klaus] [Walter, Hauke] [Berg, Thomas] [Braun, Patrick] [Fätkenheuer, Gerd] [Oette, Mark] [Rockstroh, Jürgen] [Kupfer, Bernd] [Kaiser, Rolf] [Däumer, Martin] | Computational methods for the design of effective therapies against drug resistant HIV strains In: Bioinformatics [21], 3943-3950 | Journal Article | BDC02BF6CC9D1AA3C12570A70047721A-Beerenwinkel2005d | | |||||||||
| | 2005 | | Bock, Christoph Lengauer, Thomas [Reither, Sabine] [Mikeska, Thomas] [Paulsen, Martina] [Walter, Jörn] | | | BiQ Analyzer: visualization and quality control for DNA methylation data from bisulfite sequencing In: Bioinformatics [21], 4067-4068 | Journal Article | CFB03B8E8023EC7BC12570A60052B0E4-Bock2005 | | ||||
| 2005 | [Bojunga, Jörg] [Welsch, Christoph] Antes, Iris Albrecht, Mario Lengauer, Thomas [Zeuzem, Stefan] | Structural and functional analysis of a novel mutation of CYP21B in a heterozygote carrier of 21-hydroxylase deficiency In: Human Genetics [117], 558-564 | Journal Article | 2CF8636AA3233CE6C1256FEB0060FC3A-Antes2005c | | |||||||||
| | 2005 | | [Castellano, Sergi] [Lobanov, Alexey V.] [Chapple, Charles] [Novoselov, Sergey V.] Albrecht, Mario [Hua, Deame] [Lescure, Alain] Lengauer, Thomas [Krol, Alain] [Gladyshev, Vadim N.] [Guigó, Roderic] | | Diversity and functional plasticity of eukaryotic selenoproteins: Identification and characterization of the SelJ family In: Proceedings of the National Academy of Sciences [102], 16188-16193 | Journal Article | CACB2DBAAB29B4C8C12570AD00745D01-Albrecht2005l | | |||||
| 2005 | [Costello, Christine M.] [Mah, Nancy] [Häsler, Robert] [Rosenstiel, Philip] [Waetzig, Georg H.] Hahn, Andreas [Lu, Tim] [Gurbuz, Yesim] [Nikolaus, Susanna] Albrecht, Mario [Hampe, Jochen] [Lucius, Ralph] [Klöppel, Günther] [Eickhoff, Holger] [Lehrach, Hans] Lengauer, Thomas [Schreiber, Stefan] | Dissection of the inflammatory bowel disease transcriptome using genome-wide cDNA microarrays identifies novel candidate disease genes In: PLoS Medicine [2], 771-787 | Journal Article | 535F6F63B8D80DD5C1257011003B9610-Albrecht2005h | | |||||||||
| | 2005 | | [Das, Ani V.] [James, Jackson] Rahnenführer, Jörg [Thoresona, Wallace B.] [Bhattacharyaa, Sumitra] [Zhao, Xing] [Ahmad, Iqbal] | | Retinal properties and potential of the adult mammalian ciliary epithelium stem cells In: Vision Research [45], 1653-1666 | Journal Article | 23FEB00FD100DAC6C1256FEA002CAB53-Rahnenfuehrer2005d | | |||||
| 2005 | Djoumbou, Yannick | Docking studies to investigate the effect of correlated mutations in the HIV-Protease on the drug resistance of HIV Universität des Saarlandes | Thesis - Bachelor thesis | 7941057214A88A7DC12572AA00491C85-djoumbou2005 | | |||||||||
| | 2005 | | [Gu, Wei] [Kofler, Michael] Antes, Iris [Freund, Christian] [Helms, Volkhard] | | Alternative Binding Modes of Polyproline Peptides Binding to the GYF Domain In: Biochemistry [44], 6404-6415 | Journal Article | 03AAD2885859F866C1256FBD003FDCFE-Antes2005f | | |||||
| 2005 | Hahn, Andreas Rahnenführer, Jörg Talwar, Priti Lengauer, Thomas | Confirmation of human protein interaction data by human expression data In: BMC Bioinformatics [6], 1-11 | Journal Article | EE453D27E0700C0AC1256FFC003E18E3-Hahn2005 | | |||||||||
| | 2005 | | [Hessler, G.] [Zimmermann, M.] [Matter, H.] [Evers, A.] [Naumann, T.] Lengauer, Thomas [Rarey, M.] | | Multiple-Ligand-Based Virtual Screening: Methods and Applications of the MTree Approach In: Journal of Medicinal Chemistry [48], 6575-6584 | Journal Article | B54DE070A54B282BC12570F9003F51A4-Lengauer2005b | | |||||
| 2005 | Immesberger, Stefan | | A Prefiltering Method to Speed up Protein Structure Prediction Universität des Saarlandes | Thesis - Bachelor thesis | F3769AE00D70958DC12572960032EF28-Immesberger2005a | | ||||||||
| | 2005 | | [Kaiser, Rolf] [Boussaad, Ibo] [Lehmann, C.] [Däumer, Martin] Sing, Tobias [Schmeisser, N.] [Wyen, C.] Fätkenheuer, Gerd | | Stable coreceptor usage of HIV-1 in patients with ongoing treatment failure on HAART In: Proceedings of the 3rd European HIV Drug Resistance Workshop, - | Proceedings Article | A1569908BDACCE5CC1256FB7007FFFDB-Kaiser2005 | | |||||
| 2005 | Kämper, Andreas Kaspar, Melanie Lengauer, Thomas | Efficient conformational analysis of synthetic receptors with macrocyclic and fused ring systems In: Synthetic Receptors 2005: Second World Congress on Synthetic Receptors, O4 | Proceedings Article | 1FA79F16B19AD9C6C12570B3005A9A10-Kaemper2005 | | |||||||||
| | 2005 | | Kaspar, Melanie | | | Conformational Analysis of Macrocyclic Ring Systems Universität des Saarlandes | Thesis - Bachelor thesis | E502B1198E747DF7C125729600328D34-Kaspar2005a | | ||||
| 2005 | Krier, Markus | | Motif Search in Protein Sequences for Protein Structure Prediction Universität des Saarlandes | Thesis - Bachelor thesis | 911B87F9AC78D72EC125729600327195-Krier2005a | | ||||||||
| | 2005 | | Lengauer, Thomas Albrecht, Mario [Sarrazin, C.] [Mihm, U.] [Herrmann, E.] Welsch, Christoph [Sarrazin, U.] [Traver, S.] [Zeuzem, S.] | | Replication enhancing mutations of the Hepatitis C virus replicon: Prevalence and clinical significance in patients with chronic Hepatitis C In: Journal of Infectious Diseases [192], 1710-1719 | Journal Article | 22E780B8CAE29578C125757E004518F4-LengauerZeuzem2007 | | |||||
| 2005 | Lengauer, Thomas [Merkwirth, Christian] | Automatic Generation of complementary descriptors with molecular graph networks In: Journal of Chemical Information and Modeling [45], 1159-1168 | Journal Article | AF06D0952F0CB1A2C12570F9003E98E4-lengauer2005a | | |||||||||
| | 2005 | | Lengauer, Thomas | [Meyers, Robert A.] | | Informatics (Computational Biology) In: Growth Factors and Oncogenes in Gastrointestinal Cancers to Informatics (Computational Biology), 567-626 | Part of a Book | 0B00D013CFAE0D9EC1256F87003FF5C5-Lengauer2004d | | ||||
| 2005 | Meiser, Ina | Identification of functionally important regions in cytochrome P450 systems and a systematic analysis of various CYP P450 homology models Universität des Saarlandes | Thesis - Bachelor thesis | DED2654AED959AA0C12572AA004900EF-Meiser2005 | | |||||||||
| | 2005 | | Nickels, Stefan | | | Generating Molecular Hashcodes for Finding Duplicates in Virtual Screening Libraries Universität des Saarlandes | Thesis - Bachelor thesis | 7487D4AB5340F917C12572960033195A-Nickels2005a | | ||||
| 2005 | Rahnenführer, Jörg | Clustering algorithms and other exploratory methods for microarray data analysis In: Methods of Information in Medicine [44], 444-448 | Journal Article | B982DE8A5DA917C1C1256F8D0062A42C-Rahnenfuehrer2005c | | |||||||||
| | 2005 | | Rahnenführer, Jörg | | Image analysis for cDNA microarrays In: Methods of Information in Medicine [44], 405-407 | Journal Article | A27F815CFED30802C1256F8D00628CE8-Rahnenfuehrer2005b | | |||||
| 2005 | Rahnenführer, Jörg Beerenwinkel, Niko [Schulz, Wolfgang A.] [Hartmann, Christian] [von Deimling, Andreas] [Wullich, Bernd] Lengauer, Thomas | Estimating cancer survival and clinical outcome based on genetic tumor progression scores In: Bioinformatics [21], 2438-2446 | Journal Article | 6C73FBA76D1D18F3C1256FA4003676D6-Rahnenfuehrer2005a | | |||||||||
| | 2005 | | [Ralser, Markus] Albrecht, Mario [Nonhoff, Ute] Lengauer, Thomas [Lehrach, Hans] [Krobitsch, Sylvia] | | An integrative approach to gain insights into the cellular function of human ataxin-2 In: Journal of Molecular Biology [346], 203-214 | Journal Article | 851A0C1D8CA196D0C1256F8E006C3F30-Albrecht2005b | | |||||
| 2005 | [Ralser, Markus] [Nonhoff, Ute] Albrecht, Mario Lengauer, Thomas [Wanker, Erich E.] [Lehrach, Hans] [Krobitsch, Sylvia] | Ataxin-2 and huntingtin interact with endophilin-A complexes to function in plastin-associated pathways In: Human Molecular Genetics [14], 2893-2909 | Journal Article | 9787AFD34878859CC125706E003D0A9B-Albrecht2005i | | |||||||||
| | 2005 | | [Sarrazin, Christoph] [Mihm, Ulrike] [Herrmann, Eva] [Welsch, Christoph] Albrecht, Mario [Sarrazin, Ulrike] [Traver, Stella] Lengauer, Thomas [Zeuzem, Stefan] | | Clinical significance of in vitro replication-enhancing mutations of the hepatitis C virus (HCV) replicon in patients with chronic HCV infection In: The Journal of Infectious Diseases [192], 1710-1719 | Journal Article | A44E9ADCDE1B3B61C125701100398786-Albrecht2005g | | |||||
| 2005 | [Schreiber, Stefan] [Rosenstiel, Philip] Albrecht, Mario [Hampe, Jochen] [Krawczak, Michael] | Genetics of Crohn disease, an archetypal inflammatory barrier disease In: Nature Reviews Genetics [6], 376-388 | Journal Article | BDED0D6DD6E26F80C1256FBA006DD712-Albrecht2005f | | |||||||||
| | 2005 | | | Sing, Tobias Beerenwinkel, Niko [Kaiser, Rolf] [Hoffmann, Daniel] [Däumer, Martin] Lengauer, Thomas | | | Geno2pheno[coreceptor]: a tool for predicting coreceptor usage from genotype and for monitoring coreceptor-associated sequence alterations In: Proceedings of the 3rd European HIV Drug Resistance Workshop, - | Poster | 1F9471F63CB4BAB2C1256FB700532B1E-Sing2005b | | |||
| 2005 | Sing, Tobias [Svicher, Valentina] Beerenwinkel, Niko [Ceccherini-Silberstein, Francesca] [Däumer, Martin] [Kaiser, Rolf] [Walter, Hauke] [Korn, Klaus] [Hoffmann, Daniel] [Oette, Mark] [Rockstroh, Jürgen K.] Fätkenheuer, Gerd [Perno, Carlo-Federico] Lengauer, Thomas | [Jorge, A] [Torgo, L] [Brazdil, P] [Camacho, R] [Gama, J] | Characterization of novel HIV Drug Resistance Mutations using clustering, multidimensional scaling and SVM-based feature ranking In: Knowledge Discovery in Databases: PKDD 2005., 285-296 | Proceedings Article | 33FB8006EA995E2FC125728800409E21-Sing2005pkdd | | ||||||||
| | 2005 | | Steffen, Andreas Kämper, Andreas Lengauer, Thomas | Turner, A.P.F. | FlexR - A new tool for predicting the structure of synthetic host-guest complexes In: Synthetic Receptors 2005: Second World Congress on Synthetic Receptors, O7 | Proceedings Article | 98B908B2234102CEC12570B3005B346E-Steffen2005 | | |||||
| 2005 | [Svicher, Valentina] [Ceccherini-Silberstein, Francesca] Sing, Tobias [Santoro, Maria Mercedes] [Gori, C.] Beerenwinkel, Niko [Gago, F.] [D'Arrigo, R.] [Bellocchi, M. C.] [Giannella, S.] [Bertoli, A.] [D'Arminio Monforte, A.] [Antinori, A.] [Perno, Carlo-Federico] | Additional Mutations in HIV-1 Reverse Transcriptase are Involved in the Highly Ordered Regulation of NRTI Resistance In: Proceedings of the 3rd European HIV Drug Resistance Workshop, - | Proceedings Article | 0FD71277D572E56BC1256FB700556414-Svicher2005b | | |||||||||
| | 2005 | | | [Svicher, Valentina] [Ceccherini-Silberstein, Francesca] Sing, Tobias [Santoro, Maria Mercedes] [Gori, C.] Beerenwinkel, Niko [Gago, F.] [D'Arrigo, R.] [Bellochi, M.C.] [Giannella, S.] [Bertoli, A.] [D'Arminio Monforte, A.] [Antinori, A.] [Perno, Carlo-Federico] | | | A highly ordered network of HIV-1 RT mutations regulates the continuous escape from antiviral drugs In: International Workshop in HIV Dynamics and Evolution, - | Proceedings Article | D27918C5AC5D6BBFC1256FB70055CBA4-Svicher2005a | | |||
| 2005 | | Talwar, Priti Lengauer, Thomas Rahnenführer, Jörg [Heinzle, Elmar] [Velagapudi, VR] [Wittmann, Christoph] | | Towards computational analysis of metabolic profiling data for protein function prediction. In: Proceedings of the Yeast Systems Biology, 6th International Conference on Systems Biology (ICSB 2005), 1 | Poster | 3365F4847CF4C750C12572960036002A-Talwar2006a | | |||||||
| | 2005 | | | Talwar, Priti Lengauer, Thomas Rahnenführer, Jörg [Wittmann, Christoph] [Velagapudi, VR] [Heinzle, Elmar] | | | Computational Methods for Protein Function Prediction using Metabolomics Data In: Proceedings of International Workshop on Systems Biology 2005, 1 | Poster | 846986632A17E41CC12572960036F614-Talwar2005 | | |||
| 2005 | [Ulmschneider, Sarah] [Mueller-Vieira, Ursula] [Klein, Christian D.] Antes, Iris Lengauer, Thomas [Hartmann, Rolf W.] | Synthesis and Evaluation of Pyridylmethylene-tetrahydronaphthalenes and -indanes: Potent and Selective Inhibitors of Aldosterone Synthase (CYP11B2) In: Journal of Medicinal Chemistry [48], 4489-4490 | Journal Article | F5933B18291C196EC1256FBC007D318F-Antes2005a | | |||||||||
| | 2005 | | [Ulmschneider, Sarah] [Mueller-Vieira, Ursula] [Mitrenga, Markus] [Hartmann, Rolf W.] [Oberwinkler-Marchais, S] [Klein, Christian D.] [Bureik, M.] [Bernhardt, R.] Antes, Iris Lengauer, Thomas | | Synthesis and Evaluation of Imidazolylmethylenetetrahydronaphthalenes and Imidazolylmethyleneindanes: Potent Inhibitors of Aldosterone Synthase In: Journal of Medicinal Chemistry [48], 1796-1805 | Journal Article | A1FA14209B08212CC1256FBC007DCA97-Antes2005b | | |||||
| 2005 | [Valentonyte, Ruta] [Hampe, Jochen] [Huse, Klaus] [Rosenstiel, Philip] Albrecht, Mario [Stenzel, Annette] [Nagy, Marion] [Gaede, Karoline I.] [Franke, Andre] [Haesler, Robert] [Koch, Andreas] Lengauer, Thomas [Seegert, Dirk] [Reiling, Norbert] [Ehlers, Stefan] [Schwinger, Eberhard] [Platzer, Mathias] [Krawczak, Michael] [Müller-Quernheim, Joachim] [Schürmann, Manfred] [Schreiber, Stefan] | Sarcoidosis is associated with a truncating splice site mutation in BTNL2 In: Nature Genetics [37], 357-364 | Journal Article | C5973DDE5A22DC7DC1256FB6005C8085-Albrecht2005c | | |||||||||
| | 2005 | | [Van Duist, Marjan M.] Albrecht, Mario [Podswiadek, Marta] [Giachino, Daniela] Lengauer, Thomas [Punzi, Leonardo] [De Marchi, Mario] | | A new CARD15 mutation in Blau syndrome In: European Journal of Human Genetics [13], 742-747 | Journal Article | 26ED07859EF2BE81C1256FB6005D7BC6-Albrecht2005e | | |||||
| 2005 | [Voets, Marieke] Antes, Iris [Scherer, C] [Mueller-Vieira, U.] [Biemel, K.] [Barrassin, C.] [Marchais-Oberwinkler, S.] [Hartmann, R. W.] | Heteroaryl-substituted naphthalenes and structurally modified derivatives: selective inhibitors of CYP11B2 for the treatment of congestive heart failure and myocardial fibrosis In: Journal of Medicinal Chemistry [48], 6632-6642 | Journal Article | CF4A51BEEE0B0D06C12570DF0046D58F-Antes2005e | | |||||||||
| | 2005 | | Volkamer, Andrea | | | Implementation of a method to filter out compounds with toxic, reactive and unsuitable functional groups Universität des Saarlandes | Thesis - Bachelor thesis | 9A19409957FC92E6C12572960031795C-Volkamer2006a | | ||||
| 2005 | Weiss, Julia | | Generating Frequency Profiles from Multiple Structure Alignments Universität des Saarlandes | Thesis - Bachelor thesis | 81D941F37658B741C1257296003250B9-Weiss2005a | | ||||||||
| | 2005 | | [Wemmert, Silke] [Ketter, Ralf] Rahnenführer, Jörg Beerenwinkel, Niko [Strowitzki, Martin] [Feiden, Wolfgang] [Hartmann, Christian] Lengauer, Thomas [Stockhammer, Florian] [Zang, Klaus D.] [Meese, Eckart] [Steudel, Wolf-Ingo] [von Deimling, Andreas] [Urbschat, Steffi] | | | Patients with high grade gliomas harboring delections of chromosomes 9p and 10q benefit from temozolomide treatment In: Neoplasia [7], 883-893 | Journal Article | 82C9849633E76B4BC1257050003932DA-Wemmert05 | | ||||
| 2005 | Yalak, Garif | | Analysis of Mutations in the Death Domains, Death Effector Domains, Caspase Recruitment Domains, and Pyrin Domains Universität des Saarlandes | Thesis - Bachelor thesis | 71C65F14BBADA555C1257296003222A1-Yalak2004a | | ||||||||
| | 2005 | | | Zhu, Hongbo Domingues, Francisco S. Sommer, Ingolf Lengauer, Thomas | | | Analysis and prediction of protein-protein interaction types In: 4th European Conference on Computational Biology (ECCB05), 1 | Poster | 8D5B57B75B49CF5BC125723500451F0E-Zhu2005 | | |||
| 2004 | Albrecht, Mario [Golatta, Michael] [Wüllner, Ullrich] Lengauer, Thomas | Structural and functional analysis of ataxin-2 and ataxin-3 In: European Journal of Biochemistry [271], 3155-3170 | Journal Article | A051ECD11CF2842CC1256E7F005E1F28-Albrecht2004d | | |||||||||
| | 2004 | | Albrecht, Mario Lengauer, Thomas | | Novel Sm-like proteins with long C-terminal tails and associated methyltransferases In: FEBS Letters [569], 18-26 | Journal Article | 9B65820089A086C1C1256E7F005DF132-Albrecht2004c | | |||||
| 2004 | Albrecht, Mario Lengauer, Thomas | Survey on the PABC recognition motif PAM2 In: Biochemical and Biophysical Research Communications [316], 129-138 | Journal Article | 6EE815DA6CCE03B4C1256E44005DC3CE-Albrecht2004a | | |||||||||
| | 2004 | | Beerenwinkel, Niko | | Computational Analysis of HIV Drug resistance Data | Book | B4B94ECDDF63DBC4C1256F8F006C38D7-Beerenwinkel2004 | | |||||
| 2004 | Beerenwinkel, Niko | [Oette, Mark] [Kaiser, Rolf] [Häussinger, Dieter] | Das Arevir-Projekt : neue Wege zur Optimierung von Anti-HIV-Therapien In: Resistenz in der HIV-Therapie : Diagnostik und Management, 94-98 | Part of a Book | BA1BCE10F4772BF6C1256F09004B575E-NB2003b | | ||||||||
| | 2004 | | Beerenwinkel, Niko | [Oette, Mark] [Kaiser, Rolf] [Häussinger, Dieter] | Methoden zur Interpretation genotypischer Resistenztests In: Resistenz in der HIV-Therapie : Diagnostik und Management, 66-68 | Part of a Book | 1ECDE65F051ED39DC1256F09004AAC64-NB2003a | | |||||
| 2004 | Beerenwinkel, Niko Rahnenführer, Jörg Däumer, Martin Hoffmann, Daniel Kaiser, Rolf Selbig, Joachim Lengauer, Thomas | [Gusfield, Dan] [Bourne, Philip] [Istrail, Sorin] [Pevzner, Pavel] [Waterman, Michael] | Learning multiple evolutionary pathways from cross-sectional data In: RECOMB 2004 : proceedings of the Eighth Annual International Conference on Research in Computational Molecular Biology, 36-44 | Proceedings Article | 58471DAB4FD17627C1256E150060EA62-Beerenwinkel2004a | | ||||||||
| | 2004 | | | Beerenwinkel, Niko Sing, Tobias [Däumer, Martin] [Kaiser, Rolf] Lengauer, Thomas | [Boucher, Charles] [Mellors, John] [Larder, Brendan] [Richman, Douglas] | | Computing the genetic barrier In: XII International HIV Drug resistance Workshop, S125-S125 | Proceedings Article | 90F41D4A0F62F86AC1256FB70054347F-Beerenwinkel2004Computing | | |||
| 2004 | Binsl, Thomas | | Implementation of a Generic Fragment Based Method for Automated Calculation of the Octanol-Water Partition Coefficient Universität des Saarlandes | Thesis - Bachelor thesis | E73EDA451701A6A2C1257296003386EA-Binsl2004a | | ||||||||
| | 2004 | | [Crass, T.] Antes, Iris [Basekow, R.] [Bork, P.] Buning, Christian [Christensen, M.] [Claußen, H.] [Ebeling, C.] [Ernst,P.] [Gailus-Durner, V.] [Glatting, K.-H.] [Gohla, R.] [Gößling, F.] [Grote, K.] [Heidtke, K.] [Herrmann, A.] [O Keefe, S.] [Kießlich, O.] [Kolibal, S.] [Korbel, J.O.] Lengauer, Thomas [Liebich, I.] [van der Linden, M.] [Luz, H.] [Meissner, K.] [von Mering, C.] [Mevissen, T.] [Mewes, H.-W.] [Michael, H.] [Mokrejs, M.] [Müller, T.] [Pospisil, H.] [Rarey, Matthias] [Reich, J.G.] [Schneider, R.] [Schomburg, D.] [Schulze-Kremer, S.] [Schwarzer, K.] Sommer, Ingolf [Springstubbe, S.] [Suhai, S.] [Thoppae, G.] [Vingron, M.] [Warfsmann, J.] [Werner, T.] [Wetzler, D.] [Wingender, E.] [Zimmer, Ralf] | | The Helmholtz Network for Bioinformatics: an integrative web portal for bioinformatics resources In: Bioinformatics [20], 268-270 | Journal Article | 56B5613BC7E08ACEC1256E1D0039312A-Lengauer2004 | | |||||
| 2004 | Domingues, Francisco S. Lengauer, Thomas Sommer, Ingolf | Cooper, David | Protein Structure Prediction and Databases In: Nature Encyclopedia of the Human Genome, 864-867 | Part of a Book | EC6686BEDF0DC150C1256CD1004D7074-DomingLengSommer2004a | | ||||||||
| | 2004 | | Domingues, Francisco S. Rahnenführer, Jörg Lengauer, Thomas | | Automated clustering of ensembles of alternative models in protein structure databases In: Protein Engineering Design and Selection [17], 537-543 | Journal Article | 50FC02518393B14BC1256F69004F6062-Domingues2004 | | |||||
| 2004 | Eyrisch, Susanne | | Fun2Struc-A Tool For Predicting Protein Structure Classes from Function Predictions Universität des Saarlandes | Thesis - Bachelor thesis | 65A42C8033CB637EC125729600333829-Eyrisch2004a | | ||||||||
| | 2004 | | | Hahn, Andreas [Costello, Christine M.] [Lu, Tim] Lengauer, Thomas [Schreiber, Stefan] | | | Expression analysis for inflammatory bowel disease In: Workshop Poster Competition, ? | Poster | 34990AEED7C476C3C1256E8A003E0083-Hahn2004 | | |||
| 2004 | [Hannemann, A.] [Schön, J.C.] [Jansen, M.] [Putz, H.] Lengauer, Thomas | Modelling amorphous Si3B3N7: Structure and elastic properties In: Physical Review [B 70], 144201-144201 | Journal Article | DF176B90BD981AA7C1256F870041969C-Lenguaer2004e | | |||||||||
| | 2004 | | [Hofmann, W.P.] [Herrmann, E.] [Kronenberger, B.] Merkwirth, Christian Welsch, Christoph Lengauer, Thomas [Zeuzem, S.] [Sarrazin, C.] | | Association of HCV-related mixed cryoglobulinemia with specific mutational patterns of the HCV E2 protein and CD81 expression on peripheral B lymphocytes In: Blood [104], 1228-1229 | Journal Article | 64BC5D46639E66F7C1256F870041CA21-Lengauer2004f | | |||||
| 2004 | [James, Jackson] [Das, Ani V.] Rahnenführer, Jörg [Ahmad, Iqbal] | Cellular and Molecular Characterization of Early and Late Retinal Stem Cells/Progenitors: Differential Regulation of Proliferation and Context Dependent Role of Notch Signaling In: Journal of Neurobiology [61], 359-376 | Journal Article | 43E8726E1937CDBEC1256ED1004FF9B9-Rahnenfuehrer2004b | | |||||||||
| | 2004 | | [James, Jackson] [Das, Ani V.] [Zhao, Xing] Rahnenführer, Jörg [Ahmad, Iqbal] | | Identification of c-Kit receptor as a regulator of adult neural stem cells in the mammalian eye: interactions with Notch signaling In: Developmental Biology [273], 87-105 | Journal Article | 7D6B3674D6E40111C1256ED10051442B-Rahnenfuehrer2004c | | |||||
| 2004 | Lengauer, Thomas [Lemmen, Christian] [Rarey, Matthias] [Zimmermann, M.] | Novel technologies for virtual screening In: Drug Discovery Today [9], 27-34 | Journal Article | FABC1F852C0DEE17C1256F87003F8E7C-Lengauer2004c | | |||||||||
| | 2004 | | Merkwirth, Christian [Bröcker, J.] [Ogorzalek, Maciej] Wichard, J.D. | | Finite iteration DT-CNN - new design and operation principles In: Proceedings (ISCAS-04) : 2004 IEEE International Symposium on Circuits and Systems. - Vol. 5, Blind signal processing, computer-aided network design, invited sessions, neural sytems and applications, power systems and power electronic circuits, 504-507 | Proceedings Article | 145A01691936A2A9C1256F93003C189C-Merkwirth2004a | | |||||
| 2004 | Merkwirth, Christian [Mauser, H.] [Schulz-Gasch, T.] [Roche, O.] [Stahl, M.] Lengauer, Thomas | Ensemble methods for classification in cheminformatics In: Journal of Chemical Information and Modeling [44], 1971-1978 | Journal Article | CBFB07FF43608B39C1256F93003CBE59-Merkwirth2004b | | |||||||||
| | 2004 | | [Öhsen von, Niklas] Sommer, Ingolf [Zimmer, Ralf] Lengauer, Thomas | | Arby: Automatic protein structure prediction using profile-profile alignment and confidence measures In: Bioinformatics [20], 2228-2235 | Journal Article | 9BA9D096E9A22697C1256F87003F1474-Lengauer2004b | | |||||
| 2004 | [Prlic, Andreas] Domingues, Francisco S. [Lackner, Peter] [Sippl, Manfred J.] | WILMA-automated annotation of protein sequences In: Bioinformatics [20], 127-128 | Journal Article | B3D6280BB2DADCAFC1256E160053410D-Domingues2004a | | |||||||||
| | 2004 | | Rahnenführer, Jörg [Bozinov, Daniel] | | Hybrid clustering for microarray image analysis combining intensity and shape features In: BMC Bioinformatics [5], 1-11 | Journal Article | 6E51307B56D1D090C1256F8D00618956-Rahnenfuehrer2004d | | |||||
| 2004 | Ramírez, Fidel | Ramírez, Fidel [Balbin, Alejandro] [Betancourt-Morales, Andres] [Mora-Oberlaender, Julian] [Angel-Rodriguez, Melina] | Evolucion de la Evolucionalidad In: Biologos lejos del equilibrio: Nuevas metaforas evolutivas, 59-87 | Part of a Book | F0ABD6AA7055C470C125726D004A74DF-Ramirez2004 | | ||||||||
| | 2004 | | Sander, Oliver | | Local sequence-structure relationships in proteins Friedrich-Alexander-Universität Erlangen-Nürnberg | Thesis - other | 7709CBCAA0BE5668C1256FB70046E7D7-Sander2004 | | |||||
| 2004 | Schlicker, Andreas | | Automated Differential Analysis of Proteomes Universität des Saarlandes | Thesis - Bachelor thesis | AA2E3D3582987489C12572960031E8B5-Schlicker2004a | | ||||||||
| | 2004 | | Sing, Tobias Beerenwinkel, Niko Lengauer, Thomas | [Hernández-Orallo, José] [Ferri, César] [Lachiche, Nicolas] [Falch, Peter A.] | Learning mixtures of localized rules by maximizing the area under the ROC curve In: ROCAI-2004: 1st International Workshop on ROC Analysis in Artificial Intelligence, 89-96 | Proceedings Article | 0CACCD1AEDCF0E0AC1256F8F006D8ABB-Sing2004b | | |||||
| 2004 | Sommer, Ingolf Rahnenführer, Jörg Domingues, Francisco S. [de Lichtenberg, Ulrik] Lengauer, Thomas | Predicting Protein Structure Classes from Function Predictions In: Bioinformatics [20], 770-776 | Journal Article | 01BD8B1507F2B18DC1256E150061DC51-Sommer2004a | | |||||||||
| | 2004 | | | Steffen, Andreas Kämper, Andreas Lengauer, Thomas | | | Development of a new tool for predicting the structure of host-guest complexes In: Proceedings of the 2nd Summer School Medicinal Chemistry Regensburg 2004, 83 | Poster | 9205A6515B1747A1C1256F9400339623-Steffen2004a | | |||
| 2004 | | Steffen, Andreas Kämper, Andreas Lengauer, Thomas | | FlexR - Predicting the structure of host-guest complexes In: Proceedings of the Annual Meeting of the German Pharmaceutical Society - Joint Meeting 2004 (DPhG 2004), 130 | Poster | AE7C956D7E72AD19C1256F940033AB01-Steffen2004 | | |||||||
| | 2004 | | [Stoll, Monika] [Corneliussen, Brit] [Costello, Christine M.] [Waetzig, Georg H.] [Mellgard, Bjorn] [Koch, W. Andreas] [Rosenstiel, Philip] Albrecht, Mario [Croucher, Peter J.P.] [Seegert, Dirk] [Nikolaus, Susanna] [Hampe, Jochen] Lengauer, Thomas [Pierrou, Stefan] [Foelsch, Ulrich R.] [Mathew, Christopher G.] [Lagerstrom-Fermer, Maria] [Schreiber, Stefan] | | Genetic variation in DLG5 is associated with inflammatory bowel disease In: Nature Genetics [36], 376-380 | Journal Article | 292FD7E8268DC713C1256E750058DF8F-Albrecht2004b | | |||||
| 2004 | | Talwar, Priti Lengauer, Thomas Rahnenführer, Jörg [Velagapudi, VR] [Wittmann, Christoph] [Heinzle, Elmar] | | Computational Methods For Metabolite Screening In: Proceedings of the 12th International Conference on Intelligent Systems for Molecular Biology + 3rd European Conference on Computational Biology (ISMB/ECCB 2004), 1 | Poster | D61FD3726B6BE592C12572960037E469-Talwar2004a | | |||||||
| | 2004 | | | Talwar, Priti Lengauer, Thomas Rahnenführer, Jörg [Velagapudi, VR] [Wittmann, Christoph] [Heinzle, Elmar] | | | Computational Methods For Metabolite Screening In: Proceedings of the 5th International Conference on Systems Biology (ICSB 2004), 1 | Poster | 478392D7F114B747C125729600377613-Talwar2004b | | |||
| 2004 | [Thornton, J.] [Bourne, P.] [Gilbert, D.] [Goble, C.] [Goldman, N.] [Gribskov, M.] [Hide, W.] [Higgins, D.] [Kanehisa, M.] Lengauer, Thomas [Linial, M.] [Myers, G.] [Quackenbush, J.] [Rebholz-Schuhmann, D.] [Rost, B.] [Sowdhamini, R.] [Valencia, A.] [Vingron, M.] [Xu, Y.] | Proceedings Twelfth International Conference on Intelligent Systems for Molecular Biology/Third European Conference on Computional Biology 2004 (ISMB/ECCB 2004) | Proceedings | CE8EEF730652679EC1256F87004223F9-Lengauer2004g | | |||||||||
| | 2004 | | [Wichard, J.D.] [Ogorzalek, Maciej] Merkwirth, Christian [Bröcker, J.] | | Finite iteration DT-CNN with stationary templates In: Proceedings of the 8th IEEE International Workshop on Cellular Neural Networks and their Applications (CNNA 2004), 459-464 | Proceedings Article | F560E5B375574106C1256F93003DA205-Merkwirth2004d | | |||||
| 2003 | Albrecht, Mario Domingues, Francisco S. [Schreiber, Stefan] Lengauer, Thomas | Identification of mammalian orthologs associates PYPAF5 with distinct functional roles In: FEBS Letters [538], 173-177 | Journal Article | 8CBFB5CA06B555D3C1256D260030D4E5-Albrecht2003a | | |||||||||
| | 2003 | | Albrecht, Mario Domingues, Francisco S. [Schreiber, Stefan] Lengauer, Thomas | | Structural localization of disease-associated sequence variations in the NACHT and LRR domains of PYPAF1 and NOD2 In: FEBS Letters [554], 520-528 | Journal Article | 6577D24DE78A2632C1256DF1004440DB-Albrecht2003f | | |||||
| 2003 | Albrecht, Mario [Hoffmann, Daniel] [Evert, Bernd O.] [Schmitt, Ina] [Wüllner, Ullrich] Lengauer, Thomas | Structural modeling of ataxin-3 reveals distant homology to adaptins In: Proteins: Structure, Function, and Genetics [50], 355-370 | Journal Article | 40E6A874E6223F14C1256C7C00473559-Albrecht2003d | | |||||||||
| | 2003 | | Albrecht, Mario Lengauer, Thomas | | Pyranose oxidase identified as a member of the GMC oxidoreductase family In: Bioinformatics [19], 1216-1220 | Journal Article | 4A85AA1C6D144704C1256D26002FAE2B-Albrecht2003b | | |||||
| 2003 | Albrecht, Mario Lengauer, Thomas [Schreiber, Stefan] | Disease-associated variants in PYPAF1 and NOD2 result in similar alterations of conserved sequence In: Bioinformatics [19], 2171-2175 | Journal Article | B552BF73F6D9D403C1256CD1005228AD-Albrecht2003c | | |||||||||
| | 2003 | | Albrecht, Mario [Tosatto, Silvio C.E.] Lengauer, Thomas [Valle, Giorgio] | | Simple consensus procedures are effective and sufficient in secondary structure prediction In: Protein Engineering [16], 459-462 | Journal Article | 79E6A6056587CD69C1256D7B00520160-Albrecht2003e | | |||||
| 2003 | | Antes, Iris Lengauer, Thomas Mueller, Ursula [Ulmschneider, Sarah] [Hartmann, Rolf] | | Docking into the homology models of CYP11B1 and CYP11B2 In: Proceedings of the German Conference on Bioinformatics 2003, 13 | Poster | F00D8C73AD41BD34C1256E1A005D0933-AntesLengauer2003 | | |||||||
| | 2003 | | Antes, Iris [Wang, Hongyun] [Chandler, David] [Oster, George] | | The unbinding of ATP from F1-ATPase In: Biophysical Journal [85], 695-706 | Journal Article | B204BD3307B485E6C1256D26003E518A-AntesWangChandlerOster2003 | | |||||
| 2003 | Beerenwinkel, Niko [Däumer, Martin] [Hoffmann, Daniel] [Kaiser, Rolf] [Selbig, Joachim] Lengauer, Thomas | Bioinformatikmethoden für die Optimierung antiviraler Kombinationstherapien In: MPG Jahrbuch, 481-486 | Part of a Book | 038EE4BFBD4D990BC1256D2E0033E846-BeerenwinkelLengauer2003d | | |||||||||
| | 2003 | | Beerenwinkel, Niko [Däumer, Martin] [Kaiser, Rolf] [Walter, Hauke] [Korn, Klaus] [Hoffmann, Daniel] [Selbig, Joachim] Lengauer, Thomas | | Estimating effective drug combinations against drug-resistant mutants from genotypes In: Proceedings of the 1st European HIV Drug Resistamce Workshop, 18-18 | Proceedings Article | 3A6131607909C01CC1256D260028CCD3-Beerenwinkel2003b | | |||||
| 2003 | Beerenwinkel, Niko [Däumer, Martin] [Oette, Mark] [Korn, Klaus] [Hoffmann, Daniel] [Kaiser, Rolf] Lengauer, Thomas [Selbig, Joachim] [Walter, Hauke] | Geno2pheno: estimating phenotypic drug resistance from HIV-1 genotypes In: Nucleic Acids Research [31], 3850-3855 | Journal Article | 5DC7A6E597F3C20AC1256D260025F206-Beerenwinkel2003a | | |||||||||
| | 2003 | | Beerenwinkel, Niko [Kaiser, Rolf] Rahnenführer, Jörg [Däumer, Martin] [Hoffmann, Daniel] [Selbig, Joachim] Lengauer, Thomas | [Boucher, Charles] [Mellors, John] [Larder, Brendan] [Richman, Douglas] | Tree models for the evolution of drug resistance In: XII International HIV Drug resistance Workshop, S107-S107 | Proceedings Article | ADC69F7ACB586F5FC1256E16004A8AAE-Beerenwinkel2003e | | |||||
| 2003 | Beerenwinkel, Niko Lengauer, Thomas [Däumer, Martin] [Kaiser, Rolf] [Walter, Hauke] [Korn, Klaus] [Hoffmann, Daniel] [Selbig, Joachim] | Methods for optimizing antiviral combination therapies In: Bioinformatics [19], i16-i25 | Journal Article | 4F433DC17E2E4201C1256E220033C422-Beerenwinkel2003f | | |||||||||
| | 2003 | | Domingues, Francisco S. Lengauer, Thomas | | Protein Function from Sequence and Structure Data In: Applied Bioinformatics [2], 3-12 | Journal Article | 581B98750D3615E3C1256CD1005175E2-DominguesLengauer2003b | | |||||
| 2003 | | [James, Jackson] Das, Ani V. Rahnenführer, Jörg [Leon, FAS] [Ahmad, Iqbal] | | Identification of rat brahma (rBRM), a subunit of SWI/SNF chromatin remodeling complex: Involvement in the differentiation of retinal stem cells/progenitors | Miscellaneous | E41D77B1706ED82DC1256ED1004F8072-Rahnenfuehrer2003f | | |||||||
| | 2003 | | [Janssen, A.] Rahnenführer, Jörg | | A hazard based approach to dependence tests for bivariate censored models In: Mathematical Methods in Statistics [11], 297-322 | Journal Article | C801A68A1003DDBDC1256CF00043DC24-Rahnenf2003b | | |||||
| 2003 | [Jose, Joachim] [Betschieder, Dirk] Ray, Somak Lengauer, Thomas [Zangen, D] | New inhibitors of human cathepsin G identified by surface display library screening and peptide-protein docking In: 7th International Symposium on Pharmaceutical Sciences (ISOPS-7), 46-49 | Proceedings Article | 6A00BE1A732D3276C1256E190040EFCC-Ray2003 | | |||||||||
| | 2003 | | | Kämper, Andreas Lengauer, Thomas | | ECLIPPSE: Environment for Chemical Library Inspection, Pre- and Postprocessing, and Screening Evaluation. User Guide | Manual | 48F0005CFAA40D79C1256D26002E05E2-KaemperLengauer2003b | | ||||
| 2003 | | Kämper, Andreas Lengauer, Thomas | | Virtual Screening for novel Urease Inhibitors In: Proceedings of the International Workshop on New Approaches in Drug Design & Discovery, 39 | Poster | B82FC5A7B0E226D8C1256D26002CE2C5-KaemperLengauer2003a | | |||||||
| | 2003 | | Lengauer, Thomas | | Analyzing resistance phenomena in HIV with bioinformatics methods In: Bioinformatics [19], 92i | Journal Article | 16693B052BEB4ADEC1256E2200356FEC-Lengauer2003c | | |||||
| 2003 | Lengauer, Thomas [Schäfer, M.] | [Jäger, Willi] [Krebs, Hans-Joachim] | Combinatorial Optimization Techniques for Three-Dimensional Arrangement Problems In: Mathematics - Key Technology for the Future, 63-73 | Part of a Book | EE6A14C206B55B8EC1256E1D003B700B-Lengauer2003b | | ||||||||
| | 2003 | | Merkwirth, Christian [Ogorzalek, Maciej] [Wichard, Jörg Daniel] | [Ogorzalek, Maciej] [Galias, Zbigniew] [Garda, Bartlomiej] [Kadeja, Bartlomiej] | | Stochastic Gradient Descent Training of Ensembles of DT-CNN Classifiers for Digit Recognition In: Proceedings of the 16th European Conference on Circuit Theory and Design ECCTD'03, 337-341 | Proceedings Article | D22546C0E6C688C6C1256E19003E789C-Merkwirth2003ECCTD | | ||||
| 2003 | [Olsen, Lars] [Antony, Jens] [Ryde, Ulf] Adolph, Hans-Werner [Hemmingsen, Lars] | Lactam hydrolysis catalyzed by mononuclear metallo-beta-lactamases: a density functional study In: Journal of Physical Chemistry / B [107], 2366-2375 | Journal Article | C18A9097B4A0F981C1256EB7003C2CBC-Adolph03 | | |||||||||
| | 2003 | | [Peinado, M.] Lengauer, Thomas | | Parallel "go with the winners algorithms" in Distributed Memory Models In: Journal of Parallel and Distributed Processing [63], 801-814 | Journal Article | 2EB9261B028EFA7AC1256E150035511F-PeinadoLengauer2003a | | |||||
| 2003 | Rahnenführer, Jörg | On preferences of general two-sided tests with applications to Kolmogorov-Smirnov-type tests In: Statistics & Decisions [21], 115-136 | Journal Article | 1A43A164748B5DCDC1256CF00043A852-Rahnenf2003a | | |||||||||
| | 2003 | | | Rahnenführer, Jörg Bozinov, Daniel | | | Comparative quality analyses for hybrid clustering of microarray images In: Proceedings of the Sventh Annual International Conference on Computational Biology, - | Poster | C6621EA229B026CBC1256D2600395F23-Rahnenf2003d | | |||
| 2003 | Rahnenführer, Jörg | [Denison, David D.] [Hansen, Mark H.] [Holmes, Christopher C.] [Mallick, Bani] [Yu, Bin] | Statistical Inference for Clustering Microarrays In: Proceedings of the MSRI Workshop: Nonlinear Estimation and Classification, 323-332 | Proceedings Article | 7D1E17F38C770037C1256D260038F307-Rahnenf2001a | | ||||||||
| | 2003 | | Rahnenführer, Jörg [Futschik, Andreas] | | Cost-effective screening for differentially expressed genes in microarray experiments based on normal mixtures In: Austrian Journal of Statistics [32], 225-238 | Journal Article | 06720B3132039B75C1256E1500602EA3-Rahnenfuehrer2003e | | |||||
| 2003 | Rahnenführer, Jörg | [Schader, Martin] [Gaul, Wolfgang] [Vichi, Maurizio] | Efficient Clustering Methods for Tumor Classification with Microarrays In: Proceedings of the 26th Annual Conference of the Gesellschaft für Klassifikation, 670-679 | Proceedings Article | 45F2C5012898325EC1256D26003817A6-Rahnenf2003c | | ||||||||
| | 2003 | | | Talwar, Priti Lengauer, Thomas [Wittmann, Christoph] [Mangadu, Vidya] [Heinzle, Elmar] | | | Towards cellular function through metabolite screening In: Proceedings of the 3rd Annual Conference on Metabolic Profiling: Pathways in Discovery, 7 | Proceedings Article | 76BD83884DE933CCC1256EA600529A9D-Talwar2003 | | |||
| 2003 | Talwar, Priti [Wittmann, Christoph] Lengauer, Thomas [Heinzle, Elmar] | Software tool for automated processing of 13C labeling data from mass spectrometry data In: BioTechniques [35], 1214-1215 | Journal Article | 81120A1AE013CCFAC1256E150034FBB4-Talwar2003a | | |||||||||
| | 2003 | | [von Öhsen, Niklas] Sommer, Ingolf [Zimmer, Ralf] | | Profile-Profile Alignment: A Powerful Tool For Protein Structure Prediction In: Pacific Symposium on Biocomputing, PSB 2003, 252-263 | Proceedings Article | 80338963F1A96355C1256E1600443AC2-vonOehsen2003 | | |||||
| 2003 | [Wolf, Katharina] [Walter, Hauke] Beerenwinkel, Niko [Keulen, Wilco] [Kaiser, Rolf] [Hoffmann, Daniel] Lengauer, Thomas [Selbig, Joachim] [Vandamme, Anne-Mieke] [Korn, Klaus] [Schmidt, Barbara] | Tenofovir resistance and resensitization In: Antimicrobial Agents and Chemotherapy [47], 3478-3484 | Journal Article | ED4177270D38178BC1256E1500344DE5-Beerenwinkel2003 | | |||||||||
| | 2003 | | [Zien, Alexander] [Fluck, Juliane] [Zimmer, Ralf] Lengauer, Thomas | | Microarrays: How many do you need? In: Journal of Computational Biology [10], 653-667 | Journal Article | 0109E1F63DC0E6DFC1256D2E0031FF83-Lengauer2003a | | |||||
| 2002 | Albrecht, Mario [Hanisch, Daniel] [Zimmer, Ralf] Lengauer, Thomas | | Improving fold recognition of protein threading by experimental distance constraints In: In Silico Biology [2], 325-337 | Journal Article | A3AFAC2A9014CFA2C1256CB7004F71AE-Albrecht2002 | | ||||||||
| | 2002 | | | Antes, Iris [Chandler, David] [Oster, George] | | | A classical dynamics study of the unbinding of ATP from the F0F1-ATPase In: Poster book of the European Conference on Computational Biology, Saarbrücken, Germany 2002, - | Poster | C1696DC1BCD90205C1256E1A005BA29D-Antes2002 | | |||
| 2002 | Antes, Iris [Thiel, Walter] [Gunsteren van, Wilfred F.] | Molecular dynamics simulations of photoactive yellow protein (PYP) in three states of its photocycle: a comparison with X-ray and NMR data and analysis of the effects of Glu46 deprotonation and mutation In: European Biophysics Jounal [31], 504-520 | Journal Article | 0B5AF0AAF156423AC1256CB80030E955-AntesThielGunsteren2002a | | |||||||||
| | 2002 | | Beerenwinkel, Niko Lengauer, Thomas [Däumer, Martin] [Sierra, S.] [Schmidt, Barbara] [Walter, Hauke] [Korn, Klaus] [Oette, Mark] Fätkenheuer, Gerd [Rockstroh, J.] [Hoffmann, Daniel] [Kaiser, Rolf] [Selbig, Joachim] | | Geno2pheno is predictive of short-term virological response In: Proceedings from the 5th International Workshop on HIV Drug Resistance & Treatment Strategies, 74-74 | Proceedings Article | 3620FC7FB273015EC1256CB10038DFB5-BeerenwinkelLengauer2002c | | |||||
| 2002 | Beerenwinkel, Niko Lengauer, Thomas [Schmidt, Barbara] [Walter, Hauke] [Kaiser, Rolf] [Hoffmann, Daniel] [Korn, Klaus] [Selbig, Joachim] | Quantitative phenotype prediction by support vector machines In: Proceedings from the 5th International Workshop on HIV Drug resistance & Treatment Strategies, 97 | Proceedings Article | 515254E27D0155E8C1256CB10038789E-BeerenwinkelLengauer2002b | | |||||||||
| | 2002 | | Beerenwinkel, Niko [Schmidt, Barbara] [Walter, Hauke] [Kaiser, Rolf] Lengauer, Thomas [Hoffmann, Daniel] [Korn, Klaus] [Selbig, Joachim] | | Diversity and complexity of HIV-1drug resistance: A bioinformatics approach to predicting phenotype from genotype In: Proceedings of the National Academy of Sciences [99], 8271-8276 | Journal Article | A18169E04E2E2153C1256CB1003A0796-BeerenwinkelLengauer2002a | | |||||
| 2002 | [Bozinov, Daniel] Rahnenführer, Jörg [Burson, Cathy] [Spiegelstein, Ofer] | [Arabnia, H. R.] [Mun, Y.] | Automated Grid Alignment for High-Throughput Analysis of Microarray Images (CIIST-02) In: Proceedings of the 2002 International Conference on Imaging Science, Systems, and Technology, 161-167 | Proceedings Article | B237A9DDA310A958C1256D2600388C16-Rahnenf2002c | | ||||||||
| | 2002 | | [Freudenberg, Jan] [Zimmer, Ralf] [Hanisch, Daniel] Lengauer, Thomas | | A hypergraph-based method for unification of existing protein structure- and sequence-families In: In Silico Biology [2], 339 - 349 | Journal Article | DBAC5FECAC922270C1256C7C00465736-Lengauer2002c | | |||||
| 2002 | | Hahn, Andreas [Costello, Christine M.] [Lu, Tim] Lengauer, Thomas [Schreiber, Stefan] | | | Expression analysis for inflammatory bowel disease In: Proceedings of the n?th Conference on, ? | Poster | 5D0FE1EF82BE2604C1256D390048CABF-Hahn2002 | | ||||||
| | 2002 | | [Hanisch, Daniel] [Zien, Alexander] [Zimmer, Ralf] Lengauer, Thomas | | Co-clustering of biological networks and gene expression data In: Proceedings of the Tenth Conference on Intelligent Systems for Molecular Biology (ISMB 2002), 145-154 | Proceedings Article | 7E998CCAFA283BBBC1256CD1004341BB-Lengauer2002g | | |||||
| 2002 | [Hanisch, Daniel] [Zimmer, Ralf] Lengauer, Thomas | ProML - the Protein Markup Language for specification of protein sequences, structures and families In: In Silico Biology [2], 313 - 324 | Journal Article | 2E7A09CB698F53D9C1256C7C00460872-Lengauer2002b | | |||||||||
| | 2002 | | [Hindle, Sally A.] [Rarey, Matthias] [Buning, Christian] Lengauer, Thomas | | Flexible docking under pharmacophore type constraints In: Journal of Computer-Aided Molecular Design [16], 129-149 | Journal Article | AFE6FCA5C2AD6086C1256C6800538713-Lengauer2002a | | |||||
| 2002 | [Hoffmann, Daniel] [Schnaible, Volker] [Wefing, Stephan,] Albrecht, Mario [Hanisch, Daniel] [Zimmer, Ralf] | [Hoffmann, Karl-Hein] | A new method for the fast solution of protein-3D-structures, combining experiments and bioinformatics In: Coupling of Biological and Electronic Systems: Proceedings of the 2nd Caesarium, Bonn, 1-3 November 2000, 59-78 | Proceedings Article | 844412CFC60D6A42C12572D40076391B-Albrecht2000 | | ||||||||
| | 2002 | | | Kämper, Andreas [Apostolakis, Joannis] Lengauer, Thomas | [Borkakoti, Neera] | | Docking of Bacterial Cell-Wall Fragments into Glycopeptide Antibiotics In: From Genes to Drugs via Crystallography: 33rd crytallographic course at the E. Majorana Center, 49 | Poster | 0960CD056625CBFCC1256CB8002D5F07-KaemperLengauer2002a | | |||
| 2002 | | Kämper, Andreas Lengauer, Thomas | | Docking of Ligands into Molecular Tweezers and Molecular Clips In: Workshop of the SFB 624 'Templates', ?-? | Poster | 4355EE34B0A7CAADC1256D26002E3DA5-KaemperLengauer2002b | | |||||||
| | 2002 | | Lengauer, Thomas | | Ausbildung im Bereich Bioinformatik In: Ernst & Young Report Biotechnologie, Segmentreport Bioinformatik [1], 57-58 | Journal Article | A74A29EB9296FF38C1256CD10042561F-Lengauer2002e | | |||||
| 2002 | Lengauer, Thomas | Preface: Special RECOMB 2001 Issue In: Journal of Computational Biology [9], 147-148 | Journal Article | 4207DF0C3106A1A0C1256CAF002C780A-Lengauer2002d | | |||||||||
| | 2002 | | | Lengauer, Thomas [Lenhof, Hans-Peter] | Proceedings of the European Conference on Computational Biology (ECCB 2002) | Proceedings | 560E412888CD34B5C1256C7C00450B62-LengauerLenhof2002a | | |||||
| 2002 | | [Lienhart, Rainer] Maydt, Jochen | | An Extended Set of Haar-like Features for Rapid Object Detection In: Proceedings of the International Conference on Image Processing, 900-903 | Proceedings Article | 8FCABBF8FC27C66BC1256CB800321385-Maydt2002b | | |||||||
| | 2002 | | | Maydt, Jochen [Lienhart, Rainer] | | | A Fast Method for Training Support Vector Machines With a Very Large Set of Linear Features In: Proceedings of the International Conference on Multimedia and Expo, 309-312 | Proceedings Article | 2D815BC0B0730CAFC1256CB80031A7DE-Maydt2002a | | |||
| 2002 | | [Nishida, Yoshiharu] [Hirano, Kenichi] [Tsukamoto, Kosuke] [Nagano, Makoto] [Ikegami, Chiaki] Roomp, Kirsten [Ishihara, Mitsuaki] [Sakane, Naoki] [Zhang, Zhongyan] [Tsujii, Ken-ichi] [Matsuyama, Akifumi] [Ohama, Tohru] [Matsuura, Fumihiko] [Ishigami, Masato] [Sakai, Naohiko] [Hiraoka, Hisatoyo] [Hattori, Hiroaki] [Wellington, Cheryl L.] [Yoshida, Yoshihide] [Misugi, Susumu] [Hayden, Michael R.] [Egashira, Toru] [Yamashita, Shizuya] [Matsuzawa, Yuji] | | Expression and Functional Analyses of Novel Mutations ot ATP-Binding Cassette Transporter-1 in Japanese Patients with High-Density Lipoprotein Deficiency In: Biochemical and Biophysical Research Communications [290], 713-721 | Journal Article | 95960BB8D258FCA0C1256C690032D552-Roomp2002c | | |||||||
| | 2002 | | | Rahnenführer, Jörg | | | Hybrid clustering for microarray analysis combining intensity and shape features In: Poster book of the European Conference on Computational Biology, Saarbrücken, Germany 2002, - | Poster | CF7D45621157269DC1256E1A005A3AAF-Rahnenf2002d | | |||
| 2002 | | Rahnenführer, Jörg | | Multivariate permutation tests for the k-sample problem with clustered data In: Computational Statistics [17], 165-184 | Journal Article | 73A0FD7D7FED4F87C1256C69003005EF-Rahnenf2002b | | |||||||
| | 2002 | | | Rahnenführer, Jörg [Bozinov, Daniel] | | | Unsupervised technique for robust target separation and analysis of DNA microarray spots through adaptive pixel clustering In: Bioinformatics [18], 747-756 | Journal Article | CE94F912CFF32930C1256C69002F4655-Rahnenf2002a | | |||
| 2002 | Sommer, Ingolf [Zien, Alexander] [Öhsen von, Niklas] [Zimmer, Ralf] Lengauer, Thomas | Confidence measures for protein fold recognition In: Bioinformatics [18], 802-812 | Journal Article | 87F82209BC643D87C1256C680053367F-SommerLengauer2002a | | |||||||||
| | 2002 | | | [Wellington, Cheryl L.] [Yang, Yu-Zhou] [Zhou, Stephen] [Clee, Susanne M.] [Tan, Bing] [Hirano, Kenichi] [Zwarts, K.Y.] [Kwok, Anita] [Gelfer, Allison] [Marcil, Michel] [Newman, Scott] Roomp, Kirsten [Singaraja, Roshni] [Collins, Jennifer A.] [Zhang, Lin-Hua] [Groen, Albert K.] [Hovingh, Kees] [Brownlie, Alison] [Tafuri, Sherrie] [Genest, Jacques Jr] [Kastelein, J.J.P.] [Hayden, Michael R.] | | | Truncation mutations in ABCA1 suppress normal upregulation of full-length ABCA1 by 9-cis-retinoic acid and 22-R-hydroxycholesterol In: Journal of Lipid Research [43], 1939-1949 | Journal Article | FDF225522075F952C1256C6900323B1C-Roomp2002a | | |||
| 2002 | [Zien, Alexander] [Fluck, Juliane] [Zimmer, Ralf] Lengauer, Thomas | [Myers, Gene] [Hannenhalli, Sridhar] [Istrail, Sorin] [Pevzner, Pavel] [Waterman, Michael] | Microarrays: How Many Do You Need? In: Proceedings of the Sixth Annual Conference on Research in Computational Molecular Biology (RECOMB2002), 321-330 | Proceedings Article | BD73C148500D2CD100256CBD004BB968-Lengauer2002f | | ||||||||
| | 2002 | | | [Zwarts, K.Y.] [Clee, Susanne M.] [Zwinderman, A.H.] [Engert, J.C.] [Singaraja, Roshni] [Loubser, O] [James, E] Roomp, Kirsten [Hudson, T.J.] [Jukema, J.W.] [Kastelein, J.J.P.] [Hayden, Michael R.] | | | ABCA1 regulatory variants influence coronary artery disease independent of effects on plasma lipid levels In: Clinical Genetics [61], 115-125 | Journal Article | 1AFA12D26FFB7015C1256C690032A01D-Roomp2002b | | |||
| 2001 | Antes, Iris [Klein, Michael L.] | The formation of a β-Peptide/DPC-micelle complex studied by MD simulations | Miscellaneous | D4660A982E32A450C1256D280054EFFF-Antes2001 | | |||||||||
| | 2001 | | [Apostolakis, Joannis] [Hofmann, D.] Lengauer, Thomas | | Derivation of a scoring function for crystal structure prediction In: Acta Crystallographica [A57], 442-450 | Journal Article | 7BE0C5D79C10B79FC1256B4B00542A6F-Lengauer2001e | | |||||
| 2001 | Beerenwinkel, Niko [Däumer, Martin] [Hoffmann, Daniel] [Kaiser, Rolf] [Korn, Klaus] Lengauer, Thomas [Schmidt, Barbara] [Walter, Hauke] [Selbig, Joachim] | Neue Wege zur Optimierung von Anti-HIV Therapien In: BIOforum [24], 912-914 | Journal Article | E3B95557EA3BF228C1256D2E0033910E-BeerenwinkelLengauer2001a | | |||||||||
| | 2001 | | Beerenwinkel, Niko [Schmidt, Barbara] [Walter, Hauke] [Kaiser, Rolf] Lengauer, Thomas [Hoffmann, Daniel] [Korn, Klaus] [Selbig, Joachim] | | Geno2pheno: A system for the interpretation of genotypic HIV Drug resistance tests In: IEEE Intelligent Systems [16], 35-41 | Journal Article | DCFA07FCCA8B5A20C1256B4B0057CA4F-Lengauer2001f | | |||||
| 2001 | Claussen, C. Buning, Christian [Rarey, Matthias] Lengauer, Thomas | FlexE: Efficient Molecular Docking Considering Protein Structure Variations In: Journal of Molecular Biology [308], 377-395 | Journal Article | 18E7E673AC5AD31CC1256B4B0053AF31-Lengauer2001d | | |||||||||
| | 2001 | | [Clee, Susanne M.] [Zwinderman, A.H.] [Engert, J.C.] [Zwarts, K.Y.] [Molhuizen, H.O.] Roomp, Kirsten [Jukema, J.W.] [van Wijland, M] [van Dam, M] [Hudson, T.J.] [Brooks-Wilson, A] [Genest, Jacques Jr] [Kastelein, J.J.P.] [Hayden, Michael R.] | | Common genetic variation in ABCA1 is associated with altered lipoprotein levels and a modified risk for coronary artery disease In: Circulation [103], 1198-205 | Journal Article | 83C740C5C10CEE40C1256CF30056C996-Roomp2001a | | |||||
| 2001 | | Kämper, Andreas [Apostolakis, Joannis] [Rarey, Matthias] [Marian, Christel Maria] Lengauer, Thomas | | Docking of Ligands into Artificial Receptors | Miscellaneous | 73D8D3C07324DA35C1256D26002E78C7-KaemperLengauer2001b | | |||||||
| | 2001 | | [Kämper, Andreas] [Apostolakis, Joannis] [Rarey, Matthias] [Marian, Christel Maria] [Lengauer, Thomas] | | Docking of Ligands into Artificial Receptors In: Electronically Excited Molecules: Structure and Dynamics, 37th Symposium for Theoretical Chemistry, P76 | Proceedings Article | D268F91AF2791C4CC1256CB8002E2074-KaemperLengauer2001a | | |||||
| 2001 | Lengauer, Thomas | From Genomes to Drugs | Book | 673E2A8F11E3701BC1256B4B0050BA93-Lengauer2001b | | |||||||||
| | 2001 | | Lengauer, Thomas [Beerenwinkel, Niko] [Schmidt, B.] [Walter, H.] [Kaiser, R.] [Hoffmann, D.] [Korn, K.] [Selbig, J.] | | Geno2pheno: a new machine learning approach to predicting phenotypic drug resistance from genotype In: Antiviral Therapy [6], 104 | Journal Article | B4410D56AFB587B0C125757E004368C2-Lengauer2001r | | |||||
| 2001 | Lengauer, Thomas | [Honnefelder, Ludger] [Propping, Peter] | Bioinformatik an der Schwelle zur postgenomischen Ära In: Was wissen wir, wenn wir das menschliche Genom kennen, 56-62 | Part of a Book | B66BDBCBF5461048C1256B4B0058FACD-Lengauer2001h | | ||||||||
| | 2001 | | | Lengauer, Thomas [Sankoff, D.] [Istrail, P.] [Pevzner, P.] [Waterman, M.S.] | Proceedings of the 5th Annual Conference on Research in Computational Molecular Biology (RECOMB2001) | Book | C247B1AD255CA088C1256B4B0053001B-Lengauer2001c | | |||||
| 2001 | [Schäfer, M.] Lengauer, Thomas | Automated Layout Generation and Wiring Area Estimation for 3D Electronic Modules In: ASME Journal of Machanical Design [123], 330-336 | Journal Article | 94ADD528CFF03E29C1256B4B0058875F-Lengauer2001g | | |||||||||
| | 2001 | | [Zien, Alexander] [Aigner, T.] [Zimmer, Ralf] Lengauer, Thomas | | Centralization: A biologically sensible method for the normalization of gene expression data In: Bioinformatics [17], 323S-331S | Journal Article | 7B2926FB792C152DC1256B4B004E876D-Lengauer2001a | | |||||
| 2000 | [Clee, Susanne M.] [Kastelein, J.J.P.] [van Dam, M] [Marcil, Michel] Roomp, Kirsten [Zwarts, K.Y.] [Collins, Jennifer A.] [Roelants, R] [Tamasawa, N] [Stulc, T] [Suda, T] [Ceska, R] [Boucher, B] [Rondeau, C] [DeSouich, C] [Brooks-Wilson, A] [Molhuizen, H.O.] [Frohlich, J] [Genest, Jacques Jr] [Hayden, Michael R.] | Age and residual cholesterol efflux affect HDL cholesterol levels and coronary artery disease in ABCA1 heterozygotes In: Journal of Clinical Investigation [106], 1263-70 | Journal Article | 8FE001B7F85FC269C1256CF300565009-Roomp2000a | | |||||||||
| | 2000 | | Ramírez, Fidel [Garcia, Sergio] | | GenLab: Laboratorio virtual de genetica In: Acta Biologica Colombiana [5], 45-48 | Journal Article | BC88264F2E287250C125726D004B8C9A-Ramirez2000 | | |||||
| 1999 | [Brooks-Wilson, A] [Marcil, Michel] [Clee, Susanne M.] [Zhang, Lin-Hua] Roomp, Kirsten [van Dam, M] [Yu, L] [Brewer, C] [Collins, Jennifer A.] [Molhuizen, H.O.] [Loubser, O] [Ouelette, B.F.] [Fichter, K] [Ashbourne-Excoffon, K.J.] [Sensen, C.W.] [Scherer, S] [Mott, S] [Denis, M] [Martindale, D] [Frohlich, J] [Morgan, K] [Koop, B] [Pimstone, S] [Kastelein, J.J.P.] [Hayden, Michael R.] | Mutations in ABC1 in Tangier disease and familial high-density lipoprotein In: Nature Genetics [22], 336-45 | Journal Article | 7C08E154DDE9668DC1256CF3004648EF-Roomp1999a | | |||||||||
| | 1999 | | [Marcil, Michel] [Brooks-Wilson, A.] [Clee, Susanne M.] Roomp, Kirsten [Zhang, Lin-Hua] [Yu, L.] [Collins, Jennifer A.] [van Dam, M.] [Molhuizen, H. O.] [Loubser, O.] [Ouelette, B. F.] [Sensen, C. W.] [Fichter, K.] [Mott, S.] [Denis, M.] [Boucher, B.] [Pimstone, S.] [Genest, Jacques] [Kastelein, J. J. P.] [Hayden, Michael R.] | | Mutations in the ABC1 gene in familial HDL deficiency with defective cholesterol efflux In: The Lancet [354], 1341-6 | Journal Article | 81D87C8611E25B5CC1256CF3004F0D7F-Roomp1999b | | |||||
| 1995 | [Stohr, H.] Roomp, Kirsten [Felbor, U.] [Weber, B. H.] | Genomic organization of the human tissue inhibitor of metalloproteinases-3 (TIMP3) In: Genome Research [5], 483-7 | Journal Article | 8E307916145D5B82C1256CF30045138E-Roomp1995a | | |||||||||
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| 2012 | | [Faria, Daniel] Schlicker, Andreas [Pesquita, Catia] [Bastos, Hugo] [Ferreira, António E N] Albrecht, Mario [Falcão, André O] | Mining GO annotations for improving annotation consistency In: PLoS ONE [7], e40519,1-e40519,7 | Electronic Journal Article | 41B05E900499D8FAC1257AD900397AD0-Albrecht2012d | | ||||||||
| | 2012 | | Halachev, Konstantin [Bast, Hannah] Albrecht, Felipe Lengauer, Thomas Bock, Christoph | | | EpiExplorer: live exploration and global analysis of large epigenomic datasets In: Genome Biology [13], R96,1-R96,14 | Electronic Journal Article | C3C2C5DA9DB76958C1257AD3004CB2F3-halachev2012 | | ||||
| 2012 | | Hauschild, Anne-Christin [Baumbach, Jörg Ingo] Baumbach, Jan | | Integrated statistical learning of metabolic ion mobility spectrometry profiles for pulmonary disease identification In: Genetics and Molecular Research [11], 2733-2744 | Electronic Journal Article | A68C037B14AE615DC1257AF500554A14-Hauschild2012 | | |||||||
| | 2012 | | Hauschild, Anne-Christin [Schneider, Till] Pauling, Josch [Rupp, Kathrin] [Jang, Mi] [Baumbach, Jörg Ingo] Baumbach, Jan | | | Computational Methods for Metabolomic Data Analysis of Ion Mobility Spectrometry Data - Reviewing the State of the Art In: Metabolites [2], 733-755 | Electronic Journal Article | 478AB8E6C755D77FC1257AF500582809-Hauschild2012b | | ||||
| 2012 | | Kalinina, Olga V. [Oberwinkler, Heike] [Glass, Bärbel] [Kräusslich, Hans-Georg] [Russell, Robert B.] [Briggs, John A. G.] | Computational Identification of Novel Amino-Acid Interactions in HIV Gag via Correlated Evolution In: PLoS ONE [7], e42468,1-e42468,5 | Electronic Journal Article | 231E99E1B252A1E3C1257B280046C6E3-Kalininar2012 | | ||||||||
| | 2012 | | Röttger, Richard Kreutzer, Christoph [Duong Vu, Thuy] [Wittkop, Tobias] Baumbach, Jan | [Böcker, Sebastian] [Hufsky, Franziska] [Scheubert, Kerstin] [Schleicher, Jana] [Schuster, Stefan] | Online Transitivity Clustering of Biological Data with Missing Values In: German Conference on Bioinformatics 2012 (GCB 2012), 57-68 | Electronic Proceedings Article | 8B0818D13EECA759C1257AEE005CA8F6-roettger2012online | | |||||
| 2012 | | [Soares, Siomar C.] [Abreu, Vinícius A. C.] [Ramos, Rommel T. J.] [Cerdeira, Louise] [Silva, Artur] Baumbach, Jan [Trost, Eva] [Tauch, Andreas] [Hirata, Raphael] [Mattos-Guaraldi, Ana L.] [Miyoshi, Anderson] [Azevedo, Vasco] | PIPS: Pathogenicity Island Prediction Software In: PLoS One [7], e30848,1-e30848,10 | Electronic Journal Article | 8B4B39F64DBD7320C1257B12004384DD-Soares2012 | | ||||||||
| | 2011 | | Bogojeska, Jasmina | [Shawe-Taylor, John] [Zemel, Richard S.] [Bartlett, Peter] [Pereira, Fernando] [Weinberger, Kilian Q.] | History distribution matching method for predicting effectiveness of HIV combination therapies In: Neural Information Processing Systems (NIPS 2011), 424-432 | Electronic Proceedings Article | 5AEE1AD9F23246E7C125797500392E26-Bogojeska2011 | | |||||
| 2011 | | [Codoner, Francisco] [Pou, Christian] Thielen, Alexander [García, Federico] [Delgado, Rafael] [Dalmau, David] [Álvarez-Tejado, Miguel] [Ruiz, Lidia] [Clotet, Bonaventura] [Paredes, Roger] | Added value of deep sequencing relative to population sequencing in heavily pre-treated HIV-1-infected subjects In: PLoS One [6], e19461,1-e19461,5 | Electronic Journal Article | 96489E267198CDB0C12579A3004B3FFF-Codoner2011 | | ||||||||
| | 2011 | | [Däumer, Martin] [Kaiser, Rolf] [Klein, Rolf] Lengauer, Thomas [Thiele, Bernhard] Thielen, Alexander | | Genotypic tropism testing by massively parallel sequencing: qualitative and quantitative analysis In: BMC Medical Informatics and Decision Making [11], 30,1-30,8 | Electronic Journal Article | 9E15B974ACB2A85AC1257991003E206B-Lengauer2011b | | |||||
| 2011 | | [Ebrahimi, Mansou] [Lakizadeh, Amir] [Agha-Golzadeh, Esmaeil] Ebrahimi, Mahdi | Prediction of Thermostability from Amino Acid Attributes by Combination of Clustering with Attribute Weighting: A New Vista in Engineering Enzymes In: PLoS One [6], e23146,1-e23146,11 | Electronic Journal Article | 0672B400869DAE40C12579CA00323DF9-Ebrahimi2011 | | ||||||||
| | 2011 | | Emig, Dorothea Sander, Oliver Mayr, Gabriele Albrecht, Mario | | Structure collisions between interacting proteins In: PLoS ONE [6], e19581,1-e19581,7 | Electronic Journal Article | CC4F33DAD78D6515C125787000600861-Albrecht2011e | | |||||
| 2011 | | [Ruiz, Jeronimo C.] [D'Afonseca, Vivian] [Silva, Artur] [Ali, Amjad] [Pinto, Anne C.] [Santos, Anderson R.] [Rocha, Aryanne A. M. C.] [Lopes, Debora O.] [Dorella, Fernanda A.] [Pacheco, Luis G. C.] [Costa, Marcilia P.] [Turk, Meritxell Z.] [Seyffert, Nubia] [Moraes, Pablo M. R. O.] [Soares, Siomar C.] [Almeida, Sintia S.] [Castro, Thiago L. P.] [Abreu, Vinicius A. C.] [Trost, Eva] Baumbach, Jan [Tauch, Andreas] [Schneider, Maria P. C.] [McCulloch, John] [Cerdeira, Louise T.] [Ramos, Rommel T. J.] [Zerlotini, Adhemar] [Dominitini, Anderson] [Resende, Daniela M.] [Coser, Elisangela M.] [Oliveira, Luciana M.] [Pedrosa, Andre L.] [Vieira, Carlos U.] [Guimaraes, Claudia T.] [Bartholomeu, Daniela C.] [Oliveira, Diana M.] [Santos, Fabricio R.] [Rabelo, Elida Mara] [Lobo, Francisco P.] [Franco, Gloria R.] [Costa, Ana Flavia] [Castro, Ieso M.] [Dias, Silvia Regina] [Ferro, Jesus A.] [Ortega, Jose Miguel] [Paiva, Luciano V.] [Goulart, Luiz R.] [Almeida, Juliana Franco] [Ferro, Maria Ines] [Carneiro, Newton P.] [Falcao, Paula R. K.] [Grynberg, Priscila] [Teixeira, Santuza M. R.] [Brommonschenkel, Sergio] [Oliveira, Sergio C.] [Meyer, Roberto] [Moore, Robert J.] [Miyoshi, Anderson] [Oliveira, Guilherme C.] [Azevedo, Vaco] | Evidence for Reductive Genome Evolution and Lateral Acquisition of Virulence Functions in two Corynebacterium pseudotuberculosis strains In: PLoS One [6], e18551 | Electronic Journal Article | 36F322E6FDB9126AC1257984004FB633-Baumbach2011b | | ||||||||
| | 2011 | | Saigo, Hiroto Altmann, André Bogojeska, Jasmina Müller, Fabian [Nowozin, Sebastian] Lengauer, Thomas | | | Learning from past treatments and their outcome improves prediction of In Vivo response to anti-HIV therapy In: Statistical Applications in Genetics and Molecular Biology [10], 1-32 | Electronic Journal Article | 2C8AD118FEED4801C1257822004906BB-Saigo2011 | | ||||
| 2011 | | Schelhorn, Sven-Eric Mestre, Julián Zotenko, Elena Albrecht, Mario | Inferring physical protein contacts from large-scale purification data of protein complexes In: Molecular & Cellular Proteomics [10], M110.004929,1-M110.004929,15 | Electronic Journal Article | C5FCA815D2FE9DF0C1257865005A24A3-Albrecht2011d | | ||||||||
| | 2011 | | [Sierra, Saleta] [Kaiser, Rolf] [Lübke, Nadine] Thielen, Alexander [Schuelter, Eugen] [Heger, Eva] [Däumer, Martin] [Reuter, Stefan] [Esser, Stefan] [Fätkenheuer, Gerd] [Pfister, Herbert] [Oette, Mark] Lengauer, Thomas | | Prediction of HIV-1 coreceptor usage (tropism) by sequence analysis using a genotypic approach In: Journal of Visualized Experiments [58], e3264,1-e3264,9 | Electronic Journal Article | 5CC2240FEBE90EA2C12579A3004E0431-Sierra2011 | | |||||
| 2011 | | [Ziller, Michael J.] Müller, Fabian [Liao, Jing] [Zhang, Yingying] [Gu, Hongcang] Bock, Christoph [Boyle, Patrick] [Epstein, Charles B.] [Bernstein, Bradley E.] Lengauer, Thomas [Gnirke, Andreas] [Meissner, Alexander] | Genomic distribution and inter-sample variation of non-CpG methylation across human cell types In: PLoS Genetics [17], e1002389,1-e1002389,15 | Electronic Journal Article | C18A7246299793E3C1257964003DBABE-Ziller2011 | | ||||||||
| | 2010 | | Bozek, Katarzyna Lengauer, Thomas | | Positive selection of HIV host factors and the evolution of lentivirus genes In: BMC Evolutionary Biology [10], 186,1-186,15 | Electronic Journal Article | 9D12DEB66BDA814DC12577AE004AA172-Bozek2010a | | |||||
| 2010 | | [Kamp, Christel] [Wolf, Timo] [Bravo, Ignacio G] [Kraus, Benjamin] [Krause, Birgit] [Neumann, Britta] [Winskowsky, Gudrun] Thielen, Alexander [Werner, Albrecht] [Schnierle, Barbara S] | Decreased HIV diversity after allogeneic stem cell transplantation of an HIV-1 infected patient: a case report. In: Virology Journal [7], 55,1-55,9 | Electronic Journal Article | 3D7B30EE399714F0C12577F8003EDA4C-Kamp2010 | | ||||||||
| | 2010 | | [Kuroishi, Ayumu] Bozek, Katarzyna [Shioda, Tatsuo] [Nakayama, Emi E.] | | A single amino acid substitution of the human immunodeficiency virus type 1 capsid protein affects viral sensitivity to TRIM5 alpha. In: Retrovirology [7], 58,1-58,10 | Electronic Journal Article | 8C4179BBB2A3221EC12577F100366CEE-KuroishiBozek2010 | | |||||
| 2010 | | [Prosperi, Mattia C. F.] [Rosen-Zvi, Michal] Altmann, Andre [Zazzi, Maurizio] [Di Giambenedetto, Simona] [Kaiser, Rolf] [Schülter, Eugen] [Struck, Daniel] [Sloot, Peter] [van de Vijver, David A.] [Vandamme, Anne-Mieke] [Sönnerborg, Anders] | Antiretroviral Therapy Optimisation without Genotype Resistance Testing: A Perspective on Treatment History Based Models In: PLoS ONE [5], e13753,1-e13753,8 | Electronic Journal Article | 059D566EACF3264BC1257823000068C5-Prosperi2010a | | ||||||||
| | 2010 | | Roomp, Kirsten Antes, Iris Lengauer, Thomas | | Predicting MHC class I epitopes in large datasets In: BMC Bioinformatics [11], 90,1-90,11 | Electronic Journal Article | A42CFCEC4AEB3AD0C12577AE004B2646-Roomp2010a | | |||||
| 2010 | | Saigo, Hiroto [Hattori, Masahiro] [Kashima, Hisashi] [Tsuda, Koji] | Reaction graph kernels predict EC numbers of unknown enzymatic reactions in plant secondary metabolism In: BMC Bioinformatics [11], S31,1-S31,7 | Electronic Journal Article | DA501215119BA148C1257834004926BF-SAIGO2010 | | ||||||||
| | 2010 | | Weisser, Hendrik Altmann, André [Sierra, Saleta] [Incardona, Francesca] [Struck, Daniel] [Sönnerborg, Anders] [Kaiser, Rolf] [Zazzi, Maurizio] [Tschochner, Monika] [Walter, Hauke] Lengauer, Thomas | | Only Slight Impact of Predicted Replicative Capacity for Therapy Response Prediction In: PLoSOne [5], e9044,1-e9044,10 | Electronic Journal Article | E4B245D8EE478E3BC12577AE004B419E-Weisser2010a | | |||||
| 2010 | | [Wittkop, Tobias] [Rahmann, Sven] Baumbach, Jan | Efficient Online Transcription Factor Binding Site Adjustment by Integrating Transitive Graph Projection with MoRAine 2.0 In: Special Issue: 6th International Symposium on Integrative Bioinformatics, 117,1-117,11 | Electronic Proceedings Article | 69446467FA6DA0FBC12577EE0055FAE6-Baumbach2010_jib | | ||||||||
| | 2010 | | [Zazzi, Maurizio] [Kaiser, Rolf] [Sönnerborg, Anders] [Struck, Daniel] Altmann, Andre [Prosperi, Mattia C. F.] [Rosen-Zvi, Michal] [Petroczi, Andrea] [Peres, Yardena] [Schülter, Eugen] [Boucher, Charles] [Brun-Vezinet, Francoise] [Harigan, Richard] [Morris, Lynn] [Obermeier, Martin] [Perno, Federico] [Shafer, Robert] [Vandamme, Anne-Mieke] [van Laethem, Kristel] [Wensing, Annemarie] Lengauer, Thomas [Incardona, Francesca] | | Prediction of Response to Antiretroviral Therapy by Human Experts and by the EuResist Data-Driven Expert System (the EVE Study) In: HIV Medicine [Early View], 1-8 | Electronic Journal Article | CCA8765C863EFD94C125782300011C7B-Zazzi2010a | | |||||
| 2009 | | Blankenburg, Hagen Ramírez, Fidel Büch, Joachim Albrecht, Mario | DASMIweb: online integration, analysis and assessment of distributed protein interaction data In: Nucleic Acids Research [37], W122-W128 | Electronic Journal Article | 548AC988A29CD251C12575EC0053A799-Albrecht2009b | | ||||||||
| | 2009 | | Bozek, Kasia [Relógio, Angela] [Kielbasa, Szymon M.] [Heine, Markus] [Dame, Christof] [Kramer, Achim] [Herzel, Hanspeter] | | Regulation of clock-controlled genes in mammals. In: PLoS One [4], e4882:1-e4882:12 | Electronic Journal Article | C1FD938CF799BA9DC12576AF003DA755-Bozek2009 | | |||||
| 2009 | | Bozek, Kasia Thielen, Alexander Sierra, Saleta [Kaiser, Rolf] Lengauer, Thomas | V3 loop sequence space analysis suggests different evolutionary patterns of CCR5- and CXCR4-tropic HIV. In: PLoS One [4], e7387:1-e.7387:14 | Electronic Journal Article | 3E78745307774F07C12576AF003D495C-Bozek2009a | | ||||||||
| | 2009 | | | McHardy, Alice C. Adams, Ben | | | The role of genomics in tracking the evolution of influenza A virus In: PLoS Pathog [5], e1000566 | Electronic Journal Article | EE14A9F7B415D699C125781B003D46A8-McHardy2009c | | |||
| 2009 | | [Zhang, Yingying] [Rohde, Christian] [Tierling, Sascha] [Jurkowski, Tomasz P.] Bock, Christoph [Santacruz, Diana] [Ragozin, Sergey] [Reinhardt, Richard] [Groth, Marco] [Walter, Jörn] [Jeltsch, Albert] | | DNA methylation analysis of chromosome 21 gene promoters at single base pair and single allele resolution In: PLoS Genetics [5], e1000438:1-e1000438:15 | Electronic Journal Article | 6FE0F21CF33DA472C12575B2007C2F32-Zhang2009 | | |||||||
| | 2008 | | Feuerbach, Lars Christopher, Bock Halachev, Konstantin Büch, Joachim Lengauer, Thomas | [Meijer, Gerrit] [Ried, Thomas] [Giaretti, Walter] [Hamilton, Peter] | Towards Comparative Epigenomics: A Software Toolkit For Cross-Species Epigenome Data Analysis In: Abstracts of the 2nd MC-GARD Meeting, 230 | Electronic Proceedings Article | DF2AEF4A18B7C00FC1257507004442BB-Feuerbach2008 | | |||||
| 2007 | [Kamradt, Jörn] [Jung, Volker] [Wahrheit, Kerstin] Tolosi, Laura Rahnenführer, Jörg [Schilling, Martin] [Walker, Robert] [Davis, Sean] [Stöckle, Michael] [Meltzer, Paul] [Wullich, Bernd] | Detection of Novel Amplicons in Prostate Cancer by Comprehensive Genomic Profiling of Prostate Cancer Cell Lines Using Oligonucleotide-Based ArrayCGH In: PLoS ONE [2], e769 | Electronic Journal Article | 642658E4899CA231C1257583002D4A3F-RahnenführerTolosi2007 | | |||||||||
| | 2007 | | Schlicker, Andreas Rahnenführer, Jörg Albrecht, Mario Lengauer, Thomas Domingues, Francisco S. | | | GOTax: investigating biological processes and biochemical activities along the taxonomic tree In: Genome Biology [8], R33.1-10 | Electronic Journal Article | D08810EFF2A2635AC125729C0040FD74-Schlicker2007 | | ||||
| 2006 | Bock, Christoph [Paulsen, Martina] [Tierling, Sascha] [Mikeska, Thomas] Lengauer, Thomas [Walter, Jörn] | | CpG Island Methylation in Human Lymphocytes Is Highly Correlated with DNA Sequence, Repeats, and Predicted DNA Structure In: PLoS Genetics [2], 0243-0252 | Electronic Journal Article | CDBC13700CF27425C125721F0063D22A-Bock2006b | | ||||||||
| | 2006 | | Sander, Oliver Sommer, Ingolf Lengauer, Thomas | | Local protein structure prediction using discriminative models In: BMC Bioinformatics [7], 1-13 | Electronic Journal Article | 38F3C8B7D7CC7569C125721E004F57C6-Sander2006 | | |||||
| 2006 | Schlicker, Andreas Domingues, Francisco S. Rahnenführer, Jörg Lengauer, Thomas | | A new measure for functional similarity of gene products based on Gene Ontology In: BMC Bioinformatics [7], 1-16 | Electronic Journal Article | BF59AAAC3C285FAEC12571F500572B63-Schlicker_BMCBioinformatics_2006 | | ||||||||
| | 2006 | | Sommer, Ingolf [Toppo, Stefano] Sander, Oliver Lengauer, Thomas [Tosatto, Silvio C. E.] | | Improving the quality of protein structure models by selecting from alignment alternatives In: BMC Bioinformatics [7], 1-11 | Electronic Journal Article | 5EA034C3F22F209DC125722C004C0205-Sommer2006a | | |||||
| 2006 | Zhu, Hongbo Domingues, Francisco S. Sommer, Ingolf Lengauer, Thomas | NOXclass: prediction of protein-protein interaction types In: BMC Bioinformatics [7], 1-15 | Electronic Journal Article | 644C7612915CF470C125728A0045E05C-Zhu2006 | | |||||||||
| | 2004 | | Rahnenführer, Jörg Domingues, Francisco S. Maydt, Jochen Lengauer, Thomas | | Calculating the statistical significance of changes in pathway activity from gene expression data In: Statistical Applications in Genetics and Molecular Biology [3], Article 16 | Electronic Journal Article | 807BF095BA983005C1256EB50045769D-Rahnenfuehrer2004a | | |||||
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| | 2012 | | Bader, Mathias | | Clustering epigenetic data using a Dirichlet process prior Universität des Saarlandes | Thesis - Masters thesis | E8A202C2006A8F23C1257B2700542135-BaderMaster2012 | | |||||
| 2012 | | Bastys, Tomas | | MAP Kinase Docking Motifs in HIV Proteins Universität des Saarlandes | Thesis - Masters thesis | C3FC38B8C7592CE8C1257AF60049E3A2-Bastys2012 | | |||||||
| | 2012 | | Eldarov, Nasimi | | Modeling influenza evolution in response to immune system pressure Universität des Saarlandes | Thesis - Masters thesis | 9D5BA49656C17925C1257B270052B225-EldarovMaster2012 | | |||||
| 2012 | | Kalaghatgi, Prabhav | A Phylodynamic Study of HIV Transmission Networks in Europe Universität des Saarlandes | Thesis - Masters thesis | 8203EA70281C0542C1257AD20059B62C-Kalaghatgi2012a | | ||||||||
| | 2012 | | König, Eva | | Automatic detection of loss of heterozygosity in cancer Universität des Saarlandes | Thesis - Masters thesis | B5683407CE76C544C1257B270053FCFC-KoenigMaster2012 | | |||||
| 2012 | | Koser, Sandra | Reconstructing anecestral methylation states in phylogenetic trees Universität des Saarlandes | Thesis - Masters thesis | 9EE6F63A0286B6B0C1257B270053D7D1-KoserMaster^2012 | | ||||||||
| | 2012 | | Müller, Joachim | | Extracting pathways from biological networks incorporating omics data, introducing a webinterface for KeyPathwayMiner Universität des Saarlandes | Thesis - Masters thesis | 4DD30B9F94C99DA4C1257B270052DFCB-MuellerMaster2012 | | |||||
| 2012 | | Speicher, Nora | Towards the identification of cancer subtypes by integrative clustering of molecular data Universität des Saarlandes | Thesis - Masters thesis | AE782C8688CC637CC1257B27005442DF-SpeicherMaster2012 | | ||||||||
| | 2011 | | Hauschild, Anne-Christin | | Modeling HIV Neutralization Universität des Saarlandes | Thesis - Masters thesis | 662652516C4508B0C1257834003F9FD4-Hauschild2011a | | |||||
| 2011 | | Hoinka, Jan-Malte | Finding the Hairpin in the Haystack: Towards an High Throughput in Silico Pipeline for Aptamer Motif Identification using SELEX Data Universität des Saarlandes | Thesis - Masters thesis | AB3E59A772A1FA28C1257834003F5BF1-Hoinka2011a | | ||||||||
| | 2011 | | Ivanova, Violeta | | Comparison of methods for discovering genomic aberrations relevant for cancer Universität des Saarlandes | Thesis - Masters thesis | 6AA5E4BA442B3FB4C1257834003FD490-Ivanova2011a | | |||||
| 2011 | | Jing, Cui | A comprehensive analysis of the illumina Infinium assay Universität des Saarlandes | Thesis - Masters thesis | DD6E6DB9A98C7A1CC1257834003F8B4E-Jing2011a | | ||||||||
| | 2011 | | Kacprowski, Tim | | Disease gene prioritization by combining network information and functional knowledge Universität des Saarlandes | Thesis - Masters thesis | 7088F732EB1835CEC12579A500093902-Kacprowski2011 | | |||||
| 2011 | | Weimann, Aaron | Functional Profiling in Metagenomics Universität des Saarlandes | Thesis - Masters thesis | 6E77E68C81F21394C1257834003FB077-Weimann2011a | | ||||||||
| | 2010 | | Kuhn Cuellar, Luis Eugenio | | A probabilistic algorithm for matching protein structures - and its application to detecting functionally relevant patterns Universität des Saarlandes | Thesis - Masters thesis | 6C92695A7AE2ABEEC1257834003E67F4-Kuhn2010a | | |||||
| 2010 | | Loi, Luu Phuc | Identifying discriminative motifs for molecular function of proteins Universität des Saarlandes | Thesis - Masters thesis | CACD93E133A5ED2AC1257834003E85EB-Loi2010a | | ||||||||
| | 2010 | | Lutsik, Pavlo | | Processing of high-throughput DNA methylation data Universität des Saarlandes | Thesis - Masters thesis | 99A6CDF66EEE5836C1257834003E55C9-Lutsik2010a | | |||||
| 2010 | | Perner, Juliane | Finding local similarities in gene expression patterns between partially reprogrammed cells and know cell types using a module network approach Universität des Saarlandes | Thesis - Masters thesis | 2A58198EB323C0EFC1257834003EBAC0-Perner2010a | | ||||||||
| | 2010 | | Stöckel, Daniel | | History Based HIV Therapy Outcome Prediction Universität des Saarlandes | Thesis - Masters thesis | 1D6E741537334AF4C12578220049D380-StoeckelMaster2010 | | |||||
| 2009 | Diehl, Sarah | Analysis and reconstruction of protein complex topology Universität des Saarlandes | Thesis - Masters thesis | A49BC6FB29260EE6C1257834003E0F39-Diehl2009a | | |||||||||
| | 2009 | | Doncheva, Nadezhda, T. | | Analysis and visualization of residue interaction networks Universität des Saarlandes | Thesis - Masters thesis | 5D12114B57FE895EC1257834003E40EB-Doncheva2009a | | |||||
| 2009 | | Gwinner, Frederik | Assessing the Conservation of Protein Function on Evolutionary Defined Patches Universität des Saarlandes | Thesis - Masters thesis | 49CA2B7BE46D4B7EC12575750056D330-Gwinner2009 | | ||||||||
| | 2009 | | Müller, Fabian | | Assessing Antibody Neutralization of HIV-1 as an Initial Step in the Search for gp160-based Immunogens Universität des Saarlandes | Thesis - Masters thesis | F95761D01E7C59E0C12578340039F9BD-Mueller2009 | | |||||
| 2009 | Pironti, Alejandro | Probabilistic disease gene prioritization Universität des Saarlandes | Thesis - Masters thesis | DE5387F06DFF103AC1257834003E288F-Pironti2009a | | |||||||||
| | 2008 | | Djoumbou, Yannick | | Molecular Dynamics based prediction of HIV-1 drug resistance Universität des Saarlandes | Thesis - Masters thesis | EA4049F26FF9FCB9C1257577002F9E6A-Djoumbou2008 | | |||||
| 2008 | Fischer, Sandra | Structure-based prediction of HIV-1 drug resistance Universität des Saarlandes | Thesis - Masters thesis | C3C3351B147C26B9C1257577002FB77B-Fischer2008 | | |||||||||
| | 2008 | | Schüffler, Peter | | MethMarker – A toolkit for design, optimization and validation of DNA methylation biomarkers for cancer diagnosis and therapy optimization Universität des Saarlandes | Thesis - Masters thesis | 3E65251BE8A70018C125757700302947-Schüffler2008 | | |||||
| 2007 | Bogojeska, Jasmina | Stability analysis of oncogenetic trees mixture models Universität des Saarlandes | Thesis - Masters thesis | 7A5625CE2DBE4839C1257283004617FD-Bogojeska2007a | | |||||||||
| | 2007 | | Dietzen, Matthias | | An additive tree-based approach to the prediction of the strength of acidity for drug-like molecules Universität des Saarlandes | Thesis - Masters thesis | 982634603B1A2969C1257577002F7D39-Dietzen2007 | | |||||
| 2007 | Feuerbach, Lars | | Towards Comparative Epigenomics: A Pilot Study on DNA Methylation of CpG Islands on Human Chromosome 21 Universität des Saarlandes | Thesis - Masters thesis | 1F17F22E9E474819C12575750035A81D-Feuerbach2007 | | ||||||||
| | 2007 | | Haid, Carla | | BSIFlex: Binding Site Identification including protein flexibility Universität des Saarlandes | Thesis - Masters thesis | F019912A8A684C8EC1257577002FC9A1-Haid2007 | | |||||
| 2007 | Kircher, Martin | In silico analysis of microRNA genes on human chromosome 14 and mouse chromosome 12 Universität des Saarlandes | Thesis - Masters thesis | 2707F3C4E83AB296C1257577002FE6C2-Kircher2007 | | |||||||||
| | 2007 | | Korbel, Ulli S. | | Identification of Symmetries in Molecules and Complexes Universität des Saarlandes | Thesis - Masters thesis | 30BBF52968F3F349C1257577002FFFBE-Korbel2007 | | |||||
| 2007 | Müller, Oliver | Using Shape Retrieval Techniques for Identifying Similar Protein Binding Sites Universität des Saarlandes | Thesis - Masters thesis | 5415E8A7611721F1C125728400339301-Mueller2006 | | |||||||||
| | 2007 | | Schelhorn, Sven-Eric | | Prediction of Domain and Motif Interactions from Protein Networks Universität des Saarlandes | Thesis - Masters thesis | BC8ABDF4D878B0E0C1257577002F447B-Schelhorn2007 | | |||||
| 2007 | Volkamer, Andrea | Automated generation of pharmacophore type constraints to improve FlexX docking Universität des Saarlandes | Thesis - Masters thesis | FC468FE5125A8FCAC125757700304971-Volkamer2007 | | |||||||||
| | 2007 | | Weisser, Hendrik | | Estimating the local variance of protein structure models Universität des Saarlandes | Thesis - Masters thesis | 75990C0424B4A097C12575750056B030-Weisser2007 | | |||||
| 2006 | Assenov, Yassen | Topological Analysis of Biological Networks Universität des Saarlandes | Thesis - Masters thesis | 7C34F302699CE873C12572960035F334-Assenov2006a | | |||||||||
| | 2006 | | Binsl, Thomas | | Feature Prints: A new method for calculating molecular similarities Universität des Saarlandes | Thesis - Masters thesis | 9BCD7C5249B9E51AC1257220004855B1-Binsl2006a | | |||||
| 2006 | Guo, Xin | Improving Fold Recognition Using Protein and Domain Interactions Universität des Saarlandes | Thesis - Masters thesis | C9EF4A035F20034DC12572960035C585-Guo2006a | | |||||||||
| | 2006 | | Halachev, Konstantin | | EpiGRAPHregression: A toolkit for (epi-)genomic correlation analysis and prediction of quantitative attributes Universität des Saarlandes | Thesis - Masters thesis | 56DA5A90E26AE559C12572350051361B-HalachevMaster2006 | | |||||
| 2006 | Kaspar, Melanie | Automated conformational analysis of macrocyclic ring systems Universität des Saarlandes | Thesis - Masters thesis | 57A94B416CA8D4E9C12572200047FAC2-Kaspar2006a | | |||||||||
| | 2006 | | Thielen, Alexander | | Prediction of linear B-cell epitopes and MHC class II binding peptides Eberhardt-Karls-Universität Tübingen | Thesis - Masters thesis | 01C3C87B3FF765B1C125723500305EF0-Thielen2006 | | |||||
| 2006 | Tolosi, Laura | Analysis of Array CGH Data for the Estimation of Genetic Tumor Progression Universität des Saarlandes | Thesis - Masters thesis | 0EA512C11180051FC12572350050DF02-Tolosi2006 | | |||||||||
| | 2006 | | Weinhold, Nils | | Inference of Protein Function based on Functionally Conserved Regions in Sequence and Structure Space Universität des Saarlandes | Thesis - Masters thesis | 68EDF9861A7F90A8C125728400337076-Weinhold2006 | | |||||
| 2005 | Alexa, Adrian | Integrating the GO graph structure in scoring the significance of Gene Ontology terms Universität des Saarlandes | Thesis - Masters thesis | 5423BA8EA287FC1EC1257296003505D6-Alexa2005a | | |||||||||
| | 2005 | | Schlicker, Andreas | | A Global Approach to Comparative Genomics: Comparison of Functional Annotation over the Taxonomic Tree Universität des Saarlandes | Thesis - Masters thesis | 76B88A36B2C63828C12570EB004472E7-Schlicker2005 | | |||||
| 2005 | Siu, Shirley Weng-In | Computational prediction of MHC-peptide interactions Universität des Saarlandes | Thesis - Masters thesis | 50C9778A66DE6C91C12570DF00472360-Siu2005 | | |||||||||
| | 2005 | | Yin, Junming | | Model Selection for Mixtures of Mutagenetic Trees Universität des Saarlandes | Thesis - Masters thesis | 0F41FDC343B3572BC12572960035A075-Yin2005a | | |||||
| 2004 | Bayjanov, Jumamurat | Scoring pathway activity from gene expression data Universität des Saarlandes | Thesis - Masters thesis | BC41BF7CA33F2317C1257296003534ED-Bayjanov2004a | | |||||||||
| | 2004 | | Ramírez, Fidel | | Hacia una comprension de la accion de la recombinacion genetica y la mutacion en el origen de la variacion fenotipica, mediante el analisis de la computacion evolutiva Universidad Nacional de Colombia | Thesis - Masters thesis | 9A00F2BC63B1C36DC125726D004BD118-Ramirez2004_thesis | | |||||
| 2004 | Sing, Tobias | Learning localized rule mixtures by maximizing the area under the ROC curve, with an application to the prediction of HIV-1 coreceptor usage Universität Freiburg | Thesis - Masters thesis | CADB1B353BE24C44C1256FB70051E86E-Sing2004a | | |||||||||
| | 2004 | | Trajkovski, Igor | | Analysis of protein binding pocket flexibility Universität des Saarlandes | Thesis - Masters thesis | FE9E2234859B9C8BC1256FBD005A29E8-Trajkovski2004 | | |||||
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| | 2012 | | Ramirez, Fidel | | Novel Approaches to the Integration and Analysis of Systems Biology Universität des Saarlandes | Thesis - PhD thesis | EAA85644FD5EB9F8C1257B2800408A00-Ramirez2012th | | |||||
| 2012 | Tolosi, Laura | Finding Regions of Aberrant DNA Copy Number Associated With Tumor Phenotype Universität des Saarlandes | Thesis - PhD thesis | 8E6F4087F836C766C1257B280040B1E2-Tolosi2012th | | |||||||||
| | 2011 | | Bogojeska, Jasmina | | | Statistical Learning Methods for Bias-aware HIV Therapy Screening Universität des Saarlandes | Thesis - PhD thesis | B354E6F7403CA747C1257975005027FD-BogojeskaPhD2011 | | ||||
| 2011 | | Bozek, Katarzyna | | Analysis of HIV-host interaction on different scales. Universität des Saarlandes | Thesis - PhD thesis | D454DEBABE060435C125798100144241-BozekDiss2011 | | |||||||
| | 2011 | | Emig, Dorothea | | Novel analysis approaches to context-dependent molecular networks Universität des Saarlandes | Thesis - PhD thesis | E1ADC0DDC6CE7F89C12579A5000A2C91-Emig2011 | | |||||
| 2011 | | Kunert, Lars | Maximal Common Subgraph DAGs: Theory and Application to Virtual Screening in Drug Development Universität des Saarlandes | Thesis - PhD thesis | A739E601E6423A92C12578340040221B-Kunert2010a | | ||||||||
| | 2011 | | Thielen, Alexander | | Genotypic Analysis of HIV-1 Coreceptor Usage Universität des Saarlandes | Thesis - PhD thesis | D95B13CBBC2F24FCC12579A30050374D-Thielen2011diss | | |||||
| 2010 | | Altmann, André | Bioinformatical approaches to ranking of anti-HIV combination therapies and planning of treatment schedules Universität des Saarlandes | Thesis - PhD thesis | 141A5B192249AA0DC12578230059F631-Altmann2010 | | ||||||||
| | 2010 | | Schlicker, Andreas | | | Ontology-based Similarity Measures and their Application in Bioinformatics Universität des Saarlandes | Thesis - PhD thesis | E9C50306DF804193C12577EB00373178-Schlicker2010 | | ||||
| 2010 | | Zhu, Hongbo | Characterization, classification and alignment of protein-protein interfaces Universität des Saarlandes | Thesis - PhD thesis | F18C31CDC42018BBC1257834004000B5-Zhu2010a | | ||||||||
| | 2008 | | Bock, Christoph | | Computational Epigenetics - Bioinformatic methods for epigenome prediction, DNA methylation mapping and cancer epigenetics Universität des Saarlandes | Thesis - PhD thesis | 49DE16446B8011EBC12575220079E05D-Bock2008b | | |||||
| 2008 | Hartmann, Christoph | Modeling of Flexible Side Chains for Protein-Ligand Docking Universität des Saarlandes | Thesis - PhD thesis | 3968192B66461AB1C125757600399042-hartmann2008 | | |||||||||
| | 2008 | | Maydt, Jochen | | Analysis of recombination in Molecular Sequence Data Universität des Saarlandes | Thesis - PhD thesis | FAC475000E9090CDC12575750032B7E8-maydt2008 | | |||||
| 2008 | | Sander, Oliver | Structural Descriptors for the Analysis of Protein Structure, Function, and Evolution Universität des Saarlandes | Thesis - PhD thesis | CF8D773596E2FB15C12575700059E36E-SanderDiss2008 | | ||||||||
| | 2008 | | Sing, Tobias | | Model-Based Anti HIV Therapy Universität des Saarlandes | Thesis - PhD thesis | 6016CCAE973E4D56C125757500328979-sing2008 | | |||||
| 2008 | Steffen, Andreas | Computational Approaches in Supramolecular Chemistry with a special Focus on Virtual Screening Universität des Saarlandes | Thesis - PhD thesis | 254F8F4BDCBF09CEC125757500326827-steffen2008a | | |||||||||
| | 2008 | | Talwar, Priti | | Development of Computational Methods for Metabolic Network Analysis based on Metabolomics Data Universität des Saarlandes | Thesis - PhD thesis | 745DAA12D6A3C533C125757500329E62-talwar2008 | | |||||
| 2006 | Albrecht, Mario | Combining protein structure prediction with experiments and functional information Universität des Saarlandes | Thesis - PhD thesis | 96422E3C0D0A2190C125729600409EA0-Albrecht2006i | | |||||||||
| | 2003 | | Beerenwinkel, Niko | | | Computational Analysis of HIV Drug Resistance Data Universität des Saarlandes | Thesis - PhD thesis | 02E4D5734B6ED7C3C12572960040D6F8-Beerenwinkel2003g | | ||||
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| | 2009 | | Antes, Iris | | Computational Methods for the Investigation of Protein-Ligand Interactions Universität des Saarlandes | Thesis - Habilitation thesis | 77F6E74B2985B282C12575750032CCF1-antes2009 | | |||||
| 2009 | Sommer, Ingolf | | From Protein Structure to Function Universität des Saarlandes | Thesis - Habilitation thesis | 975F52B7D7D7BF97C1257834003DB901-Sommer2010 | | ||||||||
| | 2006 | | Rahnenführer, Jörg | | Statistical methods for the biological interpretation of genome-wide measurements Universität des Saarlandes | Thesis - Habilitation thesis | D187AFB221662AC4C12572350038E3D6-Rahnenfuehrer2006Habil | | |||||
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