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| Title | Author(s) [non member] | Editor(s) [non member] | Year | Type | |
|---|---|---|---|---|---|
| A classical dynamics study of the unbinding of ATP from the F0F1-ATPase In: Poster book of the European Conference on Computational Biology, Saarbrücken, Germany 2002, - | Antes, Iris [Chandler, David] [Oster, George] | 2002 | Poster | ||
| A comprehensive analysis of the illumina Infinium assay Universität des Saarlandes | Jing, Cui |  | 2011 | Thesis - Masters thesis | |
| A Computational Method for Predicting First-Line Antiretroviral Therapy Success In: Abstract Book. 9th Workshop on HIV & Hepatitis Treatment Strategies & Antiviral Drug Resistance, 94 | Pironti, Alejandro Altmann, André Büch, Joachim Lengauer, Thomas | 2011 | Poster | ||
| A Distributed Annotation System for Molecular Interactions Ruprecht Karl Universität Heidelberg; Universität Heilbronn | Blankenburg, Hagen | | 2007 | Thesis - other | |
| A DNA methylation fingerprint of 1628 human samples In: Genome Research [22], 407-419 | [Fernandez, Agustin F.] Assenov, Yassen [Martin-Subero, Jose Ignacio] [Balint, Balazs] [Siebert, Reiner] [Taniguchi, Hiroaki] [Yamamoto, Hiroyuki] [Hidalgo, Manuel] [Tan, Aik-Choon] [Galm, Oliver] [Ferrer, Isidre] [Sanchez-Cespedes, Montse] [Villanueva, Alberto] [Carmona, Javier] [Sanchez-Mut, Jose V.] [Berdasco, Maria] [Moreno, Victor] [Capella, Gabriel] [Monk, David] [Ballestar, Esteban] [Ropero, Santiago] [Martinez, Ramon] [Sanchez-Carbayo, Marta] [Prosper, Felipe] [Agirre, Xabier] [Fraga, Mario F.] [Gran˜a, Osvaldo] [Perez-Jurado, Luis] [Mora, Jaume] [Puig, Susana] [Prat, Jaime] [Badimon, Lina] [Puca, Annibale A.] [Meltzer, Stephen J.] Lengauer, Thomas [Bridgewater, John] Bock, Christoph [Esteller, Manel] | 2012 | Journal Article | ||
| A Fast Method for Training Support Vector Machines With a Very Large Set of Linear Features In: Proceedings of the International Conference on Multimedia and Expo, 309-312 | Maydt, Jochen [Lienhart, Rainer] | | 2002 | Proceedings Article | |
| A Fully Computational Model for Predicting Percutaneous Drug Absorption In: Journal of Chemical Information and Modeling [1], 424-429 | [Neumann, Dirk] [Kohlbacher, Oliver] [Merkwirth, Christian] Lengauer, Thomas | 2006 | Journal Article | ||
| A genome-wide association scan of nonsynonymous SNPs identifies a susceptibility variant for Crohn disease in ATG16L1 In: Nature Genetics [39], 207-211 | [Hampe, Jochen] [Franke, Andre] [Rosenstiel, Philip] [Till, Andreas] [Teuber, Markus] [Huse, Klaus] Albrecht, Mario Mayr, Gabriele [De La Vega, Francisco M.] [Briggs, Jason] [Günther, Simone] [Prescott, Natalie J.] [Onnie, Clive M.] [Häsler, Robert] [Sipos, Bence] [Fölsch, Ulrich R.] Lengauer, Thomas [Platzer, Matthias] [Mathew, Christopher G.] [Krawczak, Michael] [Schreiber, Stefan] | | 2007 | Journal Article | |
| A Global Approach to Comparative Genomics: Comparison of Functional Annotation over the Taxonomic Tree Universität des Saarlandes | Schlicker, Andreas | 2005 | Thesis - Masters thesis | ||
| A hazard based approach to dependence tests for bivariate censored models In: Mathematical Methods in Statistics [11], 297-322 | [Janssen, A.] Rahnenführer, Jörg | | 2003 | Journal Article | |
| A highly ordered network of HIV-1 RT mutations regulates the continuous escape from antiviral drugs In: International Workshop in HIV Dynamics and Evolution, - | [Svicher, Valentina] [Ceccherini-Silberstein, Francesca] Sing, Tobias [Santoro, Maria Mercedes] [Gori, C.] Beerenwinkel, Niko [Gago, F.] [D'Arrigo, R.] [Bellochi, M.C.] [Giannella, S.] [Bertoli, A.] [D'Arminio Monforte, A.] [Antinori, A.] [Perno, Carlo-Federico] | 2005 | Proceedings Article | ||
| A hypergraph-based method for unification of existing protein structure- and sequence-families In: In Silico Biology [2], 339 - 349 | [Freudenberg, Jan] [Zimmer, Ralf] [Hanisch, Daniel] Lengauer, Thomas | | 2002 | Journal Article | |
| A large-scale evaluation of computational protein function prediction In: Nature Methods [10], 221-227 | [Radivojac, Predrag] [Clark, Wyatt T] [Oron, Tal Ronnen] [Schnoes, Alexandra M] [Wittkop, Tobias] [Sokolov, Artem] [Graim, Kiley] [Funk, Christopher] [Verspoor, Karin] [Ben-Hur, Asa] [Pandey, Gaurav] [Yunes, Jeffrey M] [Talwalkar, Ameet S] [Repo, Susanna] [Souza, Michael L] [Piovesan, Damiano] [Casadio, Rita] [Wang, Zheng] [Cheng, Jianlin] [Fang, Hai] [Gough, Julian] [Koskinen, Patrik] [T\"{o}r\"{o}nen, Petri] [Nokso-Koivisto, Jussi] [Holm, Liisa] [Cozzetto, Domenico] [Buchan, Daniel W A] [Bryson, Kevin] [Jones, David T] [Limaye, Bhakti] [Inamdar, Harshal] [Datta, Avik] [Manjari, Sunitha K] [Joshi, Rajendra] [Chitale, Meghana] [Kihara, Daisuke] [Lisewski, Andreas M] [Erdin, Serkan] [Venner, Eric] [Lichtarge, Olivier] [Rentzsch, Robert] [Yang, Haixuan] [Romero, Alfonso E] [Bhat, Prajwal] [Paccanaro, Alberto] [Hamp, Tobias] [Ka\ss ner, Rebecca] [Seemayer, Stefan] [Vicedo, Esmeralda] [Schaefer, Christian] [Achten, Dominik] [Auer, Florian] [Boehm, Ariane] [Braun, Tatjana] [Hecht, Maximilian] [Heron, Mark] [H\"{o}nigschmid, Peter] [Hopf, Thomas A] [Kaufmann, Stefanie] [Kiening, Michael] [Krompass, Denis] [Landerer, Cedric] [Mahlich, Yannick] [Roos, Manfred] [Bj\"{o}rne, Jari] [Salakoski, Tapio] [Wong, Andrew] [Shatkay, Hagit] Gatzmann, Fanny Sommer, Ingolf [Wass, Mark N] [Sternberg, Michael J E] [Skunca, Nives] [Supek, Fran] [Bo\v{s}njak, Matko] [Panov, Pan\v{c}e] [D\v{z}eroski, Sa\v{s}o] [Smuc, Tomislav] [Kourmpetis, Yiannis A I] [van Dijk, Aalt D J] [Braak, Cajo J F Ter] [Zhou, Yuanpeng] [Gong, Qingtian] [Dong, Xinran] [Tian, Weidong] [Falda, Marco] [Fontana, Paolo] [Lavezzo, Enrico] [{Di Camillo}, Barbara] [Toppo, Stefano] [Lan, Liang] [Djuric, Nemanja] [Guo, Yuhong] [Vucetic, Slobodan] [Bairoch, Amos] [Linial, Michal] [Babbitt, Patricia C] [Brenner, Steven E] [Orengo, Christine] [Rost, Burkhard] [Mooney, Sean D] [Friedberg, Iddo] | 2013 | Journal Article | ||
 | A network-based analysis of polyanion-binding proteins utilizing human protein arrays In: Journal of Biological Chemistry [282], 10153-10163 | [Salamat-Miller, Nazila] [Fang, Jianwen] [Seidel, Christopher W.] Assenov, Yassen Albrecht, Mario [Middaugh, C. Russell] | | 2007 | Journal Article |
| A network-based analysis of polyanion-binding proteins utilizing yeast protein arrays In: Molecular and Cellular Proteomics [5], 2263-2278 | [Salamat-Miller, Nazila] [Fang, Jianwen] [Seidel, Christopher W.] [Smalter, Aaron M.] [Assenov, Yassen] Albrecht, Mario [Middaugh, C. Russell] | 2006 | Journal Article | ||
| A new CARD15 mutation in Blau syndrome In: European Journal of Human Genetics [13], 742-747 | [Van Duist, Marjan M.] Albrecht, Mario [Podswiadek, Marta] [Giachino, Daniela] Lengauer, Thomas [Punzi, Leonardo] [De Marchi, Mario] | | 2005 | Journal Article | |
| A new measure for functional similarity of gene products based on Gene Ontology In: BMC Bioinformatics [7], 1-16 | Schlicker, Andreas Domingues, Francisco S. Rahnenführer, Jörg Lengauer, Thomas | 2006 | Electronic Journal Article | |
| A new method for the fast solution of protein-3D-structures, combining experiments and bioinformatics In: Coupling of Biological and Electronic Systems: Proceedings of the 2nd Caesarium, Bonn, 1-3 November 2000, 59-78 | [Hoffmann, Daniel] [Schnaible, Volker] [Wefing, Stephan,] Albrecht, Mario [Hanisch, Daniel] [Zimmer, Ralf] | [Hoffmann, Karl-Hein] | 2002 | Proceedings Article | |
| A Phylodynamic Study of HIV Transmission Networks in Europe Universität des Saarlandes | Kalaghatgi, Prabhav | 2012 | Thesis - Masters thesis | ||
| A Prefiltering Method to Speed up Protein Structure Prediction Universität des Saarlandes | Immesberger, Stefan | | 2005 | Thesis - Bachelor thesis |
| A probabilistic algorithm for matching protein structures - and its application to detecting functionally relevant patterns Universität des Saarlandes | Kuhn Cuellar, Luis Eugenio | 2010 | Thesis - Masters thesis | ||
| A promoter DNA demethylation landscape of human hematopoietic differentiation In: Nucleic Acids Research [40], 116-131 | [Calvanese, Vincenzo] [Fernandez, Agustín F.] [Urdinguio, Rocío G.] [Suarez-Álvarez, Beatriz] [Mangas, Cristina] [Pérez-García, Vicente] [Bueno, Clara] [Montes, Rosa] [Ramos-Mejía, Verónica] [Martínez-Camblor, Pablo] [Ferrero, Cecilia] Assenov, Yassen Bock, Christoph [Menendez, Pablo] [Carrera, Ana Clara] [Lopez-Larrea, Carlos] [Fraga, Mario F.] | | 2012 | Journal Article | |
| A single amino acid substitution of the human immunodeficiency virus type 1 capsid protein affects viral sensitivity to TRIM5 alpha. In: Retrovirology [7], 58,1-58,10 | [Kuroishi, Ayumu] Bozek, Katarzyna [Shioda, Tatsuo] [Nakayama, Emi E.] | 2010 | Electronic Journal Article | ||
| A singular value decomposition approach for improved taxonomy classification of biological sequences In: BMC Genomics [12], S11,1-S11,15 | [Santos, Anderson R] [Santos, Marcos A] Baumbach, Jan [McCulloch, John A] [Oliveira, Guilherme C] [Silva, Artur] [Miyoshi, Anderson] [Azevedo, Vasco] | | 2011 | Journal Article | |
| ABCA1 regulatory variants influence coronary artery disease independent of effects on plasma lipid levels In: Clinical Genetics [61], 115-125 | [Zwarts, K.Y.] [Clee, Susanne M.] [Zwinderman, A.H.] [Engert, J.C.] [Singaraja, Roshni] [Loubser, O] [James, E] Roomp, Kirsten [Hudson, T.J.] [Jukema, J.W.] [Kastelein, J.J.P.] [Hayden, Michael R.] | 2002 | Journal Article | ||
| Added value of deep sequencing relative to population sequencing in heavily pre-treated HIV-1-infected subjects In: PLoS One [6], e19461,1-e19461,5 | [Codoner, Francisco] [Pou, Christian] Thielen, Alexander [García, Federico] [Delgado, Rafael] [Dalmau, David] [Álvarez-Tejado, Miguel] [Ruiz, Lidia] [Clotet, Bonaventura] [Paredes, Roger] | | 2011 | Electronic Journal Article | |
| Additional Mutations in HIV-1 Reverse Transcriptase are Involved in the Highly Ordered Regulation of NRTI Resistance In: Proceedings of the 3rd European HIV Drug Resistance Workshop, - | [Svicher, Valentina] [Ceccherini-Silberstein, Francesca] Sing, Tobias [Santoro, Maria Mercedes] [Gori, C.] Beerenwinkel, Niko [Gago, F.] [D'Arrigo, R.] [Bellocchi, M. C.] [Giannella, S.] [Bertoli, A.] [D'Arminio Monforte, A.] [Antinori, A.] [Perno, Carlo-Federico] | 2005 | Proceedings Article | ||
| Advantages of Predicted Phenotypes and Statistical Learning Models in Inferring Virological Response to Antiretroviral Therapy from HIV Genotype In: Antiviral Therapy [14], 273-283 | Altmann, André Sing, Tobias [Vermeiren, Hans] [Winters, Bart] [Van Craenenbroeck, Elke] [Van der Borght, Koen] [Rhee, Soo-Yon] Shafer, Robert W. [Schülter, Eugen] [Kaiser, Rolf] [Peres, Yardena] [Sönnerborg, Anders] Fessel, W. Jeffrey [Incardona, Francesca] [Zazzi, Maurizio] [Bacheler, Lee] [Van Vlijmen, Hermann] Lengauer, Thomas | | 2009 | Journal Article | |
| Age and residual cholesterol efflux affect HDL cholesterol levels and coronary artery disease in ABCA1 heterozygotes In: Journal of Clinical Investigation [106], 1263-70 | [Clee, Susanne M.] [Kastelein, J.J.P.] [van Dam, M] [Marcil, Michel] Roomp, Kirsten [Zwarts, K.Y.] [Collins, Jennifer A.] [Roelants, R] [Tamasawa, N] [Stulc, T] [Suda, T] [Ceska, R] [Boucher, B] [Rondeau, C] [DeSouich, C] [Brooks-Wilson, A] [Molhuizen, H.O.] [Frohlich, J] [Genest, Jacques Jr] [Hayden, Michael R.] | 2000 | Journal Article | ||
| Alignment of Non-Covalent Interactions at Protein-Protein Interfaces In: PLoS ONE [3], e1926 | Zhu, Hongbo Sommer, Ingolf Lengauer, Thomas Domingues, Francisco S. | | 2008 | Journal Article |
| AltAnalyze and DomainGraph: analyzing and visualizing exon expression data In: Nucleic Acids Research [38], W755-W762 | Emig, Dorothea [Salomonis, Nathan] [Baumbach, Jan] Lengauer, Thomas [Conklin, Bruce R.] Albrecht, Mario | 2010 | Journal Article | ||
| Alternative Binding Modes of Polyproline Peptides Binding to the GYF Domain In: Biochemistry [44], 6404-6415 | [Gu, Wei] [Kofler, Michael] Antes, Iris [Freund, Christian] [Helms, Volkhard] | | 2005 | Journal Article | |
| Amino acid variations in hepatitis C virus p7 and sensitivity to antiviral combination therapy with amantadine in chronic hepatitis C In: Antiviral Therapy [11], 507-519 | [Mihm, Ulrike] [Grigorian, Natalia] [Welsch, Christoph] [Herrmann, Eva] [Kronenberger, Bernd] [Teuber, Gerlinde] [von Wagner, Michael] [Hofmann, Wolf-Peter] Albrecht, Mario Lengauer, Thomas [Zeuzem, Stefan] [Sarrazin, Christoph] | 2006 | Journal Article | ||
| An additive tree-based approach to the prediction of the strength of acidity for drug-like molecules Universität des Saarlandes | Dietzen, Matthias | | 2007 | Thesis - Masters thesis | |
| An arginine/lysine-rich motif is crucial for VCP/p97-mediated modulation of ataxin-3 fibrillogenesis In: EMBO Journal [25], 1547-1558 | [Boeddrich, Annett] [Gaumer, Sébastien] [Haacke, Annette] [Tzvetkov, Nikolay] Albrecht, Mario [Evert, Bernd O.] [Müller, Eva C.] [Lurz, Rudi] [Breuer, Peter] [Schugardt, Nancy] [Plaßmann, Stephanie] [Xu, Kexiang] [Warrick, John M.] [Suopanki, Jaana] [Wüllner, Ullrich] [Frank, Ronald] [Hartl, Ulrich F.] [Bonini, Nancy M.] [Wanker, Erich E.] | 2006 | Journal Article | ||
| An exhaustive methode for CpG island annotation In: Special Issue: Abstracts of the 3rd MC-GARD Meeting, 146-146 | Feuerbach, Lars Halachev, Konstantin Lengauer, Thomas Bock, Christoph | [Meijer, Gerrit] [Ried, Thomas] [Giaretti, Walter] [Hamilton, Peter] | 2009 | Poster | |
| An expanded model of HIV cell entry phenotype based on multi-parameter single-cell data In: Retrovirology [9], 60.1-60.15 | Bozek, Katarzyna [Eckhardt, Manon] [Sierra, Saleta] [Kaiser, Rolf] [Kräusslich, Hans-Georg] [Müller, Barbara] Lengauer, Thomas | 2012 | Journal Article | ||
| An Extended Set of Haar-like Features for Rapid Object Detection In: Proceedings of the International Conference on Image Processing, 900-903 | [Lienhart, Rainer] Maydt, Jochen | | 2002 | Proceedings Article | |
| An integrative approach for predicting interactions of protein regions In: Bioinformatics [24], i35-i41 | Schelhorn, Sven-Eric Lengauer, Thomas Albrecht, Mario | 2008 | Journal Article | ||
| An integrative approach to gain insights into the cellular function of human ataxin-2 In: Journal of Molecular Biology [346], 203-214 | [Ralser, Markus] Albrecht, Mario [Nonhoff, Ute] Lengauer, Thomas [Lehrach, Hans] [Krobitsch, Sylvia] | | 2005 | Journal Article | |
| Analysing and interpreting DNA methylation data In: Nature Reviews Genetics [13], 705-719 | Bock, Christoph | 2012 | Journal Article | ||
| Analysis and Prediction of Helix Shift Errors in Homology Modeling In: In Silico Biology [6], 131-145 | Bock, Christoph [Hesser, Jürgen] | | 2006 | Journal Article |
| Analysis and prediction of protein-protein-interaction types In: BMC Bioinformatics [7], - | Lengauer, Thomas Domingues, F.S. Sommer, Ingolf Zhu, Hongbo | 2006 | Journal Article | ||
| Analysis and prediction of protein-protein interaction types In: 4th European Conference on Computational Biology (ECCB05), 1 | Zhu, Hongbo Domingues, Francisco S. Sommer, Ingolf Lengauer, Thomas | | 2005 | Poster | |
| Analysis and reconstruction of protein complex topology Universität des Saarlandes | Diehl, Sarah | 2009 | Thesis - Masters thesis | ||
| Analysis and visualization of residue interaction networks Universität des Saarlandes | Doncheva, Nadezhda, T. | | 2009 | Thesis - Masters thesis | |
| Analysis of Array CGH Data for the Estimation of Genetic Tumor Progression Universität des Saarlandes | Tolosi, Laura | 2006 | Thesis - Masters thesis | ||
| Analysis of Expression Data: Classification of genes In: Bioinformatics - From Genomes to Therapies 2. Getting at the Inner Workings: Molecular Interactions, 993-1021 | Rahnenführer, Jörg Lengauer, Thomas | Lengauer, Thomas | 2007 | Part of a Book | |
| Analysis of HIV-host interaction on different scales. Universität des Saarlandes | Bozek, Katarzyna | 2011 | Thesis - PhD thesis | |
| Analysis of Mutations in the Death Domains, Death Effector Domains, Caspase Recruitment Domains, and Pyrin Domains Universität des Saarlandes | Yalak, Garif | | 2005 | Thesis - Bachelor thesis |
| Analysis of physicochemical and structural properties determining HIV-1 coreceptor usage In: PLoS Computational Biology [x], x | [Bozek, K.] Lengauer, Thomas [Sierra, S.] [Kaiser, Rolf] [Domingues, F.S.] | 2013 | Journal Article | ||
| Analysis of protein binding pocket flexibility Universität des Saarlandes | Trajkovski, Igor | | 2004 | Thesis - Masters thesis | |
| Analysis of protein complexes and tissue-spedific expression Universität des Saarlandes | Kacprowski, Tim | 2010 | Thesis - Bachelor thesis | ||
| Analysis of quality raw data of second generation sequencers with Quality Assessment Software In: BMC Research Notes [4], 130,1-130,6 | [Ramos, Rommel T.J.] [Carneiro, Adriana R.] Baumbach, Jan [Azevedo, Vasco] [Schneider, Maria P.C.] [Silva, Artur] | | 2011 | Journal Article | |
| Analysis of recombination in Molecular Sequence Data Universität des Saarlandes | Maydt, Jochen | 2008 | Thesis - PhD thesis | ||
| Analyzing and visualizing residue networks of protein structures In: Trends in Biochemical Sciences [36], 179-182 | Doncheva, Nadezhda T. [Klein, Karsten] Domingues, Francisco S. Albrecht, Mario | | 2011 | Journal Article | |
| Analyzing epigenome data in context of genome evolution and human diseases In: Evolutionary Genomics : Statistical and Computational Methods, Volume 2, 431-467 In: Methods of Molecular Biology [856], 431-467 | [Feuerbach, Lars] Halachev, Konstantin Assenov, Yassen Mueller, Fabian Bock, Christoph Lengauer, Thomas | [Anisimova, Maria] | 2012 | Part of a Book | |
| Analyzing resistance phenomena in HIV with bioinformatics methods In: Bioinformatics [19], 92i | Lengauer, Thomas | | 2003 | Journal Article | |
| Ancestral germline methylation reconstruction of young repeats In: Transcription, chromatin structure and DNA repair in development and differentiation, 81 | Feuerbach, Lars Lengauer, Thomas | 2010 | Poster | ||
| Antiretroviral Therapy Optimisation without Genotype Resistance Testing: A Perspective on Treatment History Based Models In: PLoS ONE [5], e13753,1-e13753,8 | [Prosperi, Mattia C. F.] [Rosen-Zvi, Michal] Altmann, Andre [Zazzi, Maurizio] [Di Giambenedetto, Simona] [Kaiser, Rolf] [Schülter, Eugen] [Struck, Daniel] [Sloot, Peter] [van de Vijver, David A.] [Vandamme, Anne-Mieke] [Sönnerborg, Anders] | | 2010 | Electronic Journal Article | |
| APOBEC3G/F a one possible driving source for co-receptor switch of the human immunodeficiency virus-1 In: Medical Microbiology and Immunology [201], 7-16 | [Heger, Eva] [Thielen, Alexander] [Gilles, Ramona] [Obermeier, Martin] Lengauer, Thomas [Kaiser, Rolf] [Trapp, Susanna] | 2012 | Journal Article | ||
| APOBEC3G/F as one possible driving force for co-receptor switch of the human immunodeficiency virus-1 In: Medical Microbiology and Immunology [201], 7-16 | [Heger, Eva] Thielen, Alexander [Gilles, Ramona] [Obermeier, Martin] Lengauer, Thomas [Kaiser, Rolf] [Trapp, Susanna] | | 2011 | Journal Article | |
| Application of oncogenetic trees mixtures as a biostatistical model of the clonal cytogenetic evolution of meningiomas In: International Journal of Cancer [121], 1473-1480 | [Ketter, Ralf] [Urbschat, Steffi] [Henn, Wolfram] [Feiden, Wolfgang] Beerenwinkel, Niko Lengauer, Thomas [Steudel, Wolf-Ingo] [Zang, Klaus D.] Rahnenführer, Jörg | 2007 | Journal Article | ||
| Applying Lasso regression to related cell types for gene network astimation Universität des Saarlandes | Galata, Valentina | | 2012 | Thesis - Bachelor thesis | |
| Arby: Automatic protein structure prediction using profile-profile alignment and confidence measures In: Bioinformatics [20], 2228-2235 | [Öhsen von, Niklas] Sommer, Ingolf [Zimmer, Ralf] Lengauer, Thomas | 2004 | Journal Article | ||
| Arevir: A Secure Platform for Designing Personalized Antiretroviral Therapies Against HIV In: Lecture Notes in Computer Science [4075], 185-194 | Roomp, Kirsten Beerenwinkel, Niko Sing, Tobias [Schülter, Eugen] Büch, Joachim [Sierra-Aragon, Saleta] [Däumer, Martin] [Hoffmann, Daniel] [Kaiser, Rolf] Lengauer, Thomas [Selbig, Joachim] | | 2006 | Journal Article | |
| Assessing Antibody Neutralization of HIV-1 as an Initial Step in the Search for gp160-based Immunogens Universität des Saarlandes | Müller, Fabian | 2009 | Thesis - Masters thesis | ||
| Assessing the Conservation of Protein Function on Evolutionary Defined Patches Universität des Saarlandes | Gwinner, Frederik | | 2009 | Thesis - Masters thesis | |
| Association of HCV-related mixed cryoglobulinemia with specific mutational patterns of the HCV E2 protein and CD81 expression on peripheral B lymphocytes In: Blood [104], 1228-1229 | [Hofmann, W.P.] [Herrmann, E.] [Kronenberger, B.] Merkwirth, Christian Welsch, Christoph Lengauer, Thomas [Zeuzem, S.] [Sarrazin, C.] | 2004 | Journal Article | ||
| Ataxin-2 and huntingtin interact with endophilin-A complexes to function in plastin-associated pathways In: Human Molecular Genetics [14], 2893-2909 | [Ralser, Markus] [Nonhoff, Ute] Albrecht, Mario Lengauer, Thomas [Wanker, Erich E.] [Lehrach, Hans] [Krobitsch, Sylvia] | | 2005 | Journal Article | |
| Ausbildung im Bereich Bioinformatik In: Ernst & Young Report Biotechnologie, Segmentreport Bioinformatik [1], 57-58 | Lengauer, Thomas | 2002 | Journal Article | ||
| Automated clustering of ensembles of alternative models in protein structure databases In: Protein Engineering Design and Selection [17], 537-543 | Domingues, Francisco S. Rahnenführer, Jörg Lengauer, Thomas | | 2004 | Journal Article | |
| Automated conformational analysis of macrocyclic ring systems Universität des Saarlandes | Kaspar, Melanie | 2006 | Thesis - Masters thesis | ||
| Automated Differential Analysis of Proteomes Universität des Saarlandes | Schlicker, Andreas | | 2004 | Thesis - Bachelor thesis |
| Automated generation of pharmacophore type constraints to improve FlexX docking Universität des Saarlandes | Volkamer, Andrea | 2007 | Thesis - Masters thesis | ||
| Automated Grid Alignment for High-Throughput Analysis of Microarray Images (CIIST-02) In: Proceedings of the 2002 International Conference on Imaging Science, Systems, and Technology, 161-167 | [Bozinov, Daniel] Rahnenführer, Jörg [Burson, Cathy] [Spiegelstein, Ofer] | [Arabnia, H. R.] [Mun, Y.] | 2002 | Proceedings Article | |
| Automated Layout Generation and Wiring Area Estimation for 3D Electronic Modules In: ASME Journal of Machanical Design [123], 330-336 | [Schäfer, M.] Lengauer, Thomas | 2001 | Journal Article | ||
| Automatic detection of loss of heterozygosity in cancer Universität des Saarlandes | König, Eva | | 2012 | Thesis - Masters thesis | |
| Automatic Generation of complementary descriptors with molecular graph networks In: Journal of Chemical Information and Modeling [45], 1159-1168 | Lengauer, Thomas [Merkwirth, Christian] | 2005 | Journal Article | ||
| Automatic Recombination Analysis Using Recoo and Mebitoo Universität des Saarlandes | Klingen, Thorsten | | 2012 | Thesis - Bachelor thesis | |
| Bioinformatical approaches to ranking of anti-HIV combination therapies and planning of treatment schedules Universität des Saarlandes | Altmann, André | 2010 | Thesis - PhD thesis | ||
| Bioinformatical Assistance of Selecting Anti-HIV Therapies: Where Do We Stand? In: Intervirology [55], 108-112 | Lengauer, Thomas | | 2012 | Journal Article | |
| Bioinformatics-assisted anti-HIV therapy In: Nature Reviews Microbiology [4], 790-797 | Lengauer, Thomas Sing, Tobias | 2006 | Journal Article | ||
| Bioinformatics - From Genomes to Therapies 1. The Building Blocks: Molecular Sequences and Structures | | Lengauer, Thomas | 2007 | Book | |
| Bioinformatics - From Genomes to Therapies 2. Getting at the Inner Workings: Molecular Interactions | Lengauer, Thomas | 2007 | Book | ||
| Bioinformatics - From Genomes to Therapies 3. The Holy Grail: Molecular Function | | Lengauer, Thomas | 2007 | Book | |
| Bioinformatics prediction of HIV coreceptor usage In: Nature Biotechnology [25], 1407-1410 | Lengauer, Thomas Sander, Oliver [Sierra, Saleta] Thielen, Alexander [Kaiser, Rolf] | 2007 | Journal Article | ||
| Bioinformatik In: Technologiefüher - Grundlagen, Anwendungen, Trends, 4 | Lengauer, Thomas | Bullinger, H.J. | 2007 | Part of a Book | |
| Bioinformatik an der Schwelle zur postgenomischen Ära In: Was wissen wir, wenn wir das menschliche Genom kennen, 56-62 | Lengauer, Thomas | [Honnefelder, Ludger] [Propping, Peter] | 2001 | Part of a Book | |
| Bioinformatikmethoden für die Optimierung antiviraler Kombinationstherapien In: MPG Jahrbuch, 481-486 | Beerenwinkel, Niko [Däumer, Martin] [Hoffmann, Daniel] [Kaiser, Rolf] [Selbig, Joachim] Lengauer, Thomas | | 2003 | Part of a Book | |
| Bioinformatik: Neue Strategien gegen Krebs In: Deutsches Ärzteblatt PRAXiS [103], 10-11 | Bock, Christoph | 2006 | Journal Article | ||
| Bioinformatische Unterstützung der Auswahl von HIV Therapien In: Informatik Spektrum [32], 320-331 | Lengauer, Thomas Altmann, André Thielen, Alexander | | 2009 | Journal Article | |
| Bioinformatisches Data Mining erschließt neue Strategien gegen Krebs In: Aktuelle Trends in der Softwareforschung, 91-99 | Bock, Christoph Halachev, Konstantin Lengauer, Thomas | [Haasis, Klaus] [Heinzl, Armin] [Klumpp, Dieter] | 2006 | Part of a Book | |
| BiQ Analyzer HT: locus-specific analysis of DNA methylation by high-throughput bisulfite sequencing In: Nucleic Acids Research [39], W551-W556 | [Lutsik, Pavlo] Feuerbach, Lars [Arand, Julia] Lengauer, Thomas [Walter, Jörn] Bock, Christoph | | 2011 | Journal Article | |
| BiQ Analyzer: visualization and quality control for DNA methylation data from bisulfite sequencing In: Bioinformatics [21], 4067-4068 | Bock, Christoph Lengauer, Thomas [Reither, Sabine] [Mikeska, Thomas] [Paulsen, Martina] [Walter, Jörn] | 2005 | Journal Article | |
| BLUEPRINT to decode the epigenetic signature written in blood In: Nature Biotechnology [30], 224-226 | [Adams, David] [Altucci, Lucia] [Antonarakis, Stylianos E] [Ballesteros, Juan] [Beck, Stephan] [Bird, Adrian] Bock, Christoph [Boehm, Bernhard] [Campo, Elias] [Caricasole, Andrea] [Dahl, Fredrik] [Dermitzakis, Emmanouil T] [Enver, Tariq] [Esteller, Manel] [Estivill, Xavier] [Ferguson-Smith, Anne] [Fitzgibbon, Jude] [Flicek, Paul] [Giehl, Claudia] [Graf, Thomas] [Grosveld, Frank] [Guigó, Roderic] [Gut, Ivo] [Helin, Kristian] [Jarvius, Jonas] [Küppers, Ralf] [Lehrach, Hans] Lengauer, Thomas [Lernmark, Åke] [Leslie, David] [Loeffler, Markus] [Macintyre, Elizabeth] [Mai, Antonello] [Martens, Joost H A] [Minucci, Saverio] [Ouwehand, Willem H] [Pelicci, Pier Giuseppe] [Pendeville, Hèléne] [Porse, Bo] [Rakyan, Vardhman] [Reik, Wolf] [Schrappe, Martin] [Schübeler, Dirk] [Seifert, Martin] [Siebert, Reiner] [Simmons, David] [Soranzo, Nicole] [Spicuglia, Salvatore] [Stratton, Michael] [Stunnenberg, Hendrik G] [Tanay, Amos] [Torrents, David] [Valencia, Alfonso] [Vellenga, Edo] [Vingron, Martin] [Walter, Jörn] [Willcocks, Spike] | | 2012 | Journal Article | |
| BSIFlex: Binding Site Identification including protein flexibility Universität des Saarlandes | Haid, Carla | 2007 | Thesis - Masters thesis | ||
| Calculating the statistical significance of changes in pathway activity from gene expression data In: Statistical Applications in Genetics and Molecular Biology [3], Article 16 | Rahnenführer, Jörg Domingues, Francisco S. Maydt, Jochen Lengauer, Thomas | | 2004 | Electronic Journal Article | |
| Cellular and Molecular Characterization of Early and Late Retinal Stem Cells/Progenitors: Differential Regulation of Proliferation and Context Dependent Role of Notch Signaling In: Journal of Neurobiology [61], 359-376 | [James, Jackson] [Das, Ani V.] Rahnenführer, Jörg [Ahmad, Iqbal] | 2004 | Journal Article | ||
| Centralization: A biologically sensible method for the normalization of gene expression data In: Bioinformatics [17], 323S-331S | [Zien, Alexander] [Aigner, T.] [Zimmer, Ralf] Lengauer, Thomas | | 2001 | Journal Article | |
| Characterization and structural analysis of novel mutations in human immunodeficiency virus type 1 reverse transcriptase involved in the regulation of restistance to nonnucleoside inhibitors In: Journal of Virology [81], 11507-11519 | [Ceccherini-Silberstein, Francesca] [Svicher, Valentina] Sing, Tobias [Artese, Anna] [Santoro, Maria Mercedes] [Forbici, Federica] [Bertoli, Ada] [Alcaro, Stefano] [Palamara, Guido] [Monforte, Antonella d'Arminio] [Balzarini, Jan] [Antinori, Andrea] Lengauer, Thomas [Perno, Carlo Federico] | 2007 | Journal Article | |
| Characterization of HIV-1 Gag Subtype C In: Abstract Book. 9th Workshop on HIV \& Hepatitis Treatment Strategies \& Antiviral Drug Resistance, 40-41 | Pironti, Alejandro Lengauer, Thomas [Kaiser, Rolf] [Schülter, Eugen] [Verheyen, Jens] | | 2012 | Poster | |
| Characterization of novel HIV Drug Resistance Mutations using clustering, multidimensional scaling and SVM-based feature ranking In: Knowledge Discovery in Databases: PKDD 2005., 285-296 | Sing, Tobias [Svicher, Valentina] Beerenwinkel, Niko [Ceccherini-Silberstein, Francesca] [Däumer, Martin] [Kaiser, Rolf] [Walter, Hauke] [Korn, Klaus] [Hoffmann, Daniel] [Oette, Mark] [Rockstroh, Jürgen K.] Fätkenheuer, Gerd [Perno, Carlo-Federico] Lengauer, Thomas | [Jorge, A] [Torgo, L] [Brazdil, P] [Camacho, R] [Gama, J] | 2005 | Proceedings Article | |
| Characterization of resistance to the protease inhibitor boceprevir in hepatitis C virus-infected patients. In: Hepatology [50], 1709-1718 | [Susser, Simone] Welsch, Christoph [Wang, Yalan] [Zettler, Markus] Domingues, Francisco S. [Karey, Ursula] [Hughes, Eric] [Ralston, Robert] [Tong, Xiao] [Herrmann, Eva] [Zeuzem, Stefan] [Sarrazin, Christoph] | | 2009 | Journal Article | |
| Characterization, classification and alignment of protein-protein interfaces Universität des Saarlandes | Zhu, Hongbo | 2010 | Thesis - PhD thesis | ||
| Chasing the AIDS Virus In: Communications of the ACM [53], 66-74 | Lengauer, Thomas Altmann, André Thielen, Alexander [Kaiser, Rolf] | | 2010 | Journal Article | |
| Circadian transcription in liver In: Biosystems [102], 61-69 | Bozek, Katarzyna [Rosahl, A. L.] [Gaub, S.] [Lorenzen, S.] [Herzel, H.] | 2010 | Journal Article | ||
| Classification with correlated features: unreliability of feature ranking and solutions In: Bioinformatics [27], 1986-1994 | Tolosi, Laura Lengauer, Thomas | | 2011 | Journal Article | |
| Clinical relevance of the 2'-5'-oligoadenylate synthetase/RNase L system for treatment response in chronic hepatitis C In: Journal of Hepatology [50], 49-58 | [Mihm, Ulrike] [Ackermann, Oliver] Welsch, Christoph [Herrmann, Eva] [Hofmann, Wolf Peter] [Grigorian, Natalia] [Welker, Martin Walter] Lengauer, Thomas [Zeuzem, Stefan] [Sarrazin, Christoph] | 2009 | Journal Article | ||
| Clinical significance of in vitro replication-enhancing mutations of the hepatitis C virus (HCV) replicon in patients with chronic HCV infection In: The Journal of Infectious Diseases [192], 1710-1719 | [Sarrazin, Christoph] [Mihm, Ulrike] [Herrmann, Eva] [Welsch, Christoph] Albrecht, Mario [Sarrazin, Ulrike] [Traver, Stella] Lengauer, Thomas [Zeuzem, Stefan] | | 2005 | Journal Article | |
| Cloudbasierte Analyse von viralen Sequenzdaten der neuesten Generation Universität des Saarlandes | Zeidler, Michael | 2012 | Thesis - Bachelor thesis | ||
| Clustering algorithms and other exploratory methods for microarray data analysis In: Methods of Information in Medicine [44], 444-448 | Rahnenführer, Jörg | | 2005 | Journal Article | |
| Clustering epigenetic data using a Dirichlet process prior Universität des Saarlandes | Bader, Mathias | 2012 | Thesis - Masters thesis | ||
| clusterMaker: A Multi-algorithm Clustering Plugin for Cytoscape In: BMC Bioinformatics [12], 436,1-436,14 | [Morris, John H.] [Apeltsin, Leonard] [Newman, Aaron M.] Baumbach, Jan [Wittkop, Tobias] [Su, Gang] [Bader, Gary D.] [Ferrin, Thomas E.] | | 2011 | Journal Article | |
| Co-clustering of biological networks and gene expression data In: Proceedings of the Tenth Conference on Intelligent Systems for Molecular Biology (ISMB 2002), 145-154 | [Hanisch, Daniel] [Zien, Alexander] [Zimmer, Ralf] Lengauer, Thomas | 2002 | Proceedings Article | ||
| Color blindness In: Nature Methods [7], 775 | Albrecht, Mario | | 2010 | Journal Article | |
| Combinatorial Optimization Techniques for Three-Dimensional Arrangement Problems In: Mathematics - Key Technology for the Future, 63-73 | Lengauer, Thomas [Schäfer, M.] | [Jäger, Willi] [Krebs, Hans-Joachim] | 2003 | Part of a Book | |
| Combined similarity and QSPR virtual screening for guest molecules of $\beta$-cyclodextrin In: New Journal of Chemistry [31], 1941-1949 | Steffen, Andreas [Karasz, Maximilian] [Thiele, Carolin] Lengauer, Thomas Kämper, Andreas [Wenz, Gerhard] [Apostolakis, Joannis] | | 2007 | Journal Article | |
| Combining protein structure prediction with experiments and functional information Universität des Saarlandes | Albrecht, Mario | 2006 | Thesis - PhD thesis | ||
| Common genetic variation in ABCA1 is associated with altered lipoprotein levels and a modified risk for coronary artery disease In: Circulation [103], 1198-205 | [Clee, Susanne M.] [Zwinderman, A.H.] [Engert, J.C.] [Zwarts, K.Y.] [Molhuizen, H.O.] Roomp, Kirsten [Jukema, J.W.] [van Wijland, M] [van Dam, M] [Hudson, T.J.] [Brooks-Wilson, A] [Genest, Jacques Jr] [Kastelein, J.J.P.] [Hayden, Michael R.] | | 2001 | Journal Article | |
| Comparative Analysis of Protein Structure Alignments In: BMC Structural Biology [7], 1 | Mayr, Gabriele Domingues, Francisco S. [Lackner, Peter] | 2007 | Journal Article | |
| Comparative Epigenomiocs - Towards Ancestral Germline Methylome Reconstruction In: Abstracts of papers presented at the 2010 meeting on The Biology of genomes, 87 | Feuerbach, Lars Lyngsoe, Rune Lengauer, Thomas [Hein, Jotun] | | 2010 | Poster | |
| Comparative genome-wide DNA methylation analysis of colorectal tumor and matched normal tissues In: Epigenetics [7], 1355-1367 | [Simmer, Femke] [Brinkman, Arie B.] Assenov, Yassen [Matarese, Filomena] [Kaan, Anita] [Sabatino, Lina] [Villanueva, Alberto] [Huertas, Dori] [Esteller, Manel] Lengauer, Thomas Bock, Christoph Colantuoni, Vittorio [Altucci, Lucia] [Stunnenberg, Henk G.] | 2012 | Journal Article | ||
| Comparative Genomics of Klebsiella pneumoniae Strains with Different Antibiotic Resistance Profiles In: Antimicrobial Agents and Chemotherapy [55], 4267-4276 | [Kumar, Vinod] Sun, Peng [Vamathevan, Jessica] [Li, Yong] [Ingraham, Karen] [Palmer, Leslie] [Huang, Jianzhong] [Brown, James R.] | | 2011 | Journal Article | |
| Comparative quality analyses for hybrid clustering of microarray images In: Proceedings of the Sventh Annual International Conference on Computational Biology, - | Rahnenführer, Jörg Bozinov, Daniel | 2003 | Poster | ||
| Comparison of Classifier Fusion Methods for Predicting Response to Anti HIV-1 Therapy In: PLoS ONE [3], e3470 | Altmann, Andre [Rosen-Zvi, Michal] [Prosperi, Mattia] [Aharoni, Ehud] [Neuvirth, Hani] [Sönnerborg, Anders] [Schülter, Eugen] Büch, Joachim [Struck, Daniel] [Peres, Yardena] [Incardona, Francesca] [Kaiser, Rolf] [Zazzi, Maurizio] Lengauer, Thomas | | 2008 | Journal Article | |
| Comparison of Envelope 2 CD81 binding regions in PBMC-derived versus serum-derived hepatitis C virus isolates: higher conservation of CD81 region 2 in PBMC isolates In: Journal of Viral Hepatitis [18], 181-192 | [Welker, M.-W.] Welsch, Christoph [Ochs, D.] [Hofmann, W. P.] [Herrmann, E.] [Piiper, A.] [Hartmann, R. W.] [Zeuzem, S.] [Sarrazin, C.] [Kronenberger, Bernd] | 2011 | Journal Article | ||
| Comparison of methods for discovering genomic aberrations relevant for cancer Universität des Saarlandes | Ivanova, Violeta | | 2011 | Thesis - Masters thesis | |
| Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications In: Nature Biotechnology [28], 1097-1105 | [Harris, R. Alan] [Wang, Ting] [Coarfa, Cristian] [Nagarajan, Raman P.] [Hong, Chibo] [Downey, Sara L.] [Johnson, Brett E.] [Fouse, Shaun D.] [Delaney, Allen] [Zhao, Yongjun] [Olshen, Adam] [Ballinger, Tracy] [Zhou, Xin] [Forsberg, Kevin J.] [Gu, Junchen] [Echipare, Lorigail] [O'Geen, Heriette] [Lister, Ryan] [Pelizzola, Mattia] [Xi, Yuanxin] [Epstein, Charles B.] [Bernstein, Bradley E.] [Hawkins, R. David] [Ren, Bing] [Chung, Wen-Yu] [Gu, Hongcang] Bock, Christoph [Gnirke, Andreas] [Zhang, Michael Q.] [Haussler, David] [Ecker, Joseph R.] [Li, Wei] [Farnham, Peggy J.] [Waterland, Robert a.] [Meissner, Alexander] [Marra, Marco A.] [Hirst, Martin] [Milosavljevic, Aleksandar] [Costello, Joseph F.] | 2010 | Journal Article | ||
| Compensatory mutations at the HIV cleavage sites p7/p1 and p1/p6-gag in therapy-naive and therapy-experienced patients In: Antiviral Therapy [11], 879-887 | [Verheyen, Jens] [Litau, Elena] Sing, Tobias [Däumer, Martin] [Balduin, Melanie] [Oette, Mark] [Fätkenheuer, Gerd] [Rockstroh, Jürgen K.] [Schuldenzucker, Ulrike] [Hoffmann, Daniel] [Pfister, Herbert] [Kaiser, Rolf] | | 2006 | Journal Article | |
| Comprehensive cluster analysis with Transitivity Clustering In: Nature Protocols [6], 285-295 | [Wittkop, Tobias] Emig, Dorothea [Truss, Anke] Albrecht, Mario [Böcker, Sebastian] Baumbach, Jan | 2011 | Journal Article | ||
| Computational analysis of covariation and interactions between HIV-1 reverse transcriptase and Integrase In: Reviews in Antiviral Therapy, 113-114 | Sander, Oliver Altmann, Andre Lengauer, Thomas | | 2008 | Poster | |
| Computational Analysis of genomic HPV data Universität des Saarlandes | Ebert, Peter | 2009 | Thesis - Bachelor thesis | ||
| Computational Analysis of HIV Drug resistance Data | Beerenwinkel, Niko | | 2004 | Book | |
| Computational Analysis of HIV Drug Resistance Data Universität des Saarlandes | Beerenwinkel, Niko | 2003 | Thesis - PhD thesis | |
| Computational analysis of human protein interaction networks In: Proteomics [7], 2541-2552 | Ramírez, Fidel Schlicker, Andreas Assenov, Yassen Lengauer, Thomas Albrecht, Mario | | 2007 | Journal Article | |
| Computational Approaches in Supramolecular Chemistry with a special Focus on Virtual Screening Universität des Saarlandes | Steffen, Andreas | 2008 | Thesis - PhD thesis | ||
| Computational Biology In: Encyclopedia of Molecular Cell Biology and Molecular Medicine, 1-71 | Lengauer, Thomas Albrecht, Mario Domingues, Francisco S. | [Meyers, Robert A.] | 2012 | Part of a Book | |
| Computational epigenetics In: Bioinformatics [24], 1-10 | Bock, Christoph Lengauer, Thomas | 2008 | Journal Article | |
| Computational Epigenetics - Bioinformatic methods for epigenome prediction, DNA methylation mapping and cancer epigenetics Universität des Saarlandes | Bock, Christoph | | 2008 | Thesis - PhD thesis | |
| Computational Epigenetics: Bioinformatik für neue Wege in der Krebsforschung In: Jahrbuch 2007, 271-277 | Bock, Christoph Lengauer, Thomas | 2007 | Part of a Book | |
| Computational Identification of Novel Amino-Acid Interactions in HIV Gag via Correlated Evolution In: PLoS ONE [7], e42468,1-e42468,5 | Kalinina, Olga V. [Oberwinkler, Heike] [Glass, Bärbel] [Kräusslich, Hans-Georg] [Russell, Robert B.] [Briggs, John A. G.] | | 2012 | Electronic Journal Article | |
| Computational Methods For Metabolite Screening In: Proceedings of the 12th International Conference on Intelligent Systems for Molecular Biology + 3rd European Conference on Computational Biology (ISMB/ECCB 2004), 1 | Talwar, Priti Lengauer, Thomas Rahnenführer, Jörg [Velagapudi, VR] [Wittmann, Christoph] [Heinzle, Elmar] | 2004 | Poster | ||
| Computational Methods For Metabolite Screening In: Proceedings of the 5th International Conference on Systems Biology (ICSB 2004), 1 | Talwar, Priti Lengauer, Thomas Rahnenführer, Jörg [Velagapudi, VR] [Wittmann, Christoph] [Heinzle, Elmar] | | 2004 | Poster | |
| Computational Methods for Metabolomic Data Analysis of Ion Mobility Spectrometry Data - Reviewing the State of the Art In: Metabolites [2], 733-755 | Hauschild, Anne-Christin [Schneider, Till] Pauling, Josch [Rupp, Kathrin] [Jang, Mi] [Baumbach, Jörg Ingo] Baumbach, Jan | 2012 | Electronic Journal Article | |
| Computational Methods for Protein Function Prediction using Metabolomics Data In: Proceedings of International Workshop on Systems Biology 2005, 1 | Talwar, Priti Lengauer, Thomas Rahnenführer, Jörg [Wittmann, Christoph] [Velagapudi, VR] [Heinzle, Elmar] | | 2005 | Poster | |
| Computational methods for the design of effective therapies against drug resistant HIV strains In: Bioinformatics [21], 3943-3950 | [Beerenwinkel, Niko] Sing, Tobias Lengauer, Thomas Rahnenführer, Jörg Roomp, Kirsten Savenkov, Igor [Fischer, Roman] [Hoffmann, Daniel] [Selbig, Joachim] [Korn, Klaus] [Walter, Hauke] [Berg, Thomas] [Braun, Patrick] [Fätkenheuer, Gerd] [Oette, Mark] [Rockstroh, Jürgen] [Kupfer, Bernd] [Kaiser, Rolf] [Däumer, Martin] | 2005 | Journal Article | ||
| Computational Methods for the Investigation of Protein-Ligand Interactions Universität des Saarlandes | Antes, Iris | | 2009 | Thesis - Habilitation thesis | |
| Computational prediction of MHC-peptide interactions Universität des Saarlandes | Siu, Shirley Weng-In | 2005 | Thesis - Masters thesis | ||
| Computational recognition of potassium channel sequences In: Bioinformatics [13], 1562-1568 | [Heil, Burkhard] [Ludwig, Jost] [Lichtenberg-Fraté, Hella] Lengauer, Thomas | | 2006 | Journal Article | |
| Computerjagd auf das AIDSVIRUS In: Spektrum der Wissenschaft [08], 62-67 | Lengauer, Thomas [Kaiser, Rolf] | 2009 | Journal Article | ||
| Computermodelle in der Wissenschaft - zwischen Analyse, Vorhersage und Suggestion | | Lengauer, Thomas | 2011 | Book | |
| Computing the genetic barrier In: XII International HIV Drug resistance Workshop, S125-S125 | Beerenwinkel, Niko Sing, Tobias [Däumer, Martin] [Kaiser, Rolf] Lengauer, Thomas | [Boucher, Charles] [Mellors, John] [Larder, Brendan] [Richman, Douglas] | 2004 | Proceedings Article | |
| Computing topological parameters of biological networks In: Bioinformatics [24], 282-284 | Assenov, Yassen Ramírez, Fidel Schelhorn, Sven-Eric Lengauer, Thomas Albrecht, Mario | | 2008 | Journal Article | |
| Confidence measures for protein fold recognition In: Bioinformatics [18], 802-812 | Sommer, Ingolf [Zien, Alexander] [Öhsen von, Niklas] [Zimmer, Ralf] Lengauer, Thomas | 2002 | Journal Article | ||
| Confirmation of human protein interaction data by human expression data In: BMC Bioinformatics [6], 1-11 | Hahn, Andreas Rahnenführer, Jörg Talwar, Priti Lengauer, Thomas | | 2005 | Journal Article | |
| Conformational analysis of alternative protein structures In: Bioinformatics [23], 3131-3138 | Domingues, Francisco S. [Rahnenführer, Jörg] Lengauer, Thomas | 2007 | Journal Article | ||
| Conformational Analysis of Macrocyclic Ring Systems Universität des Saarlandes | Kaspar, Melanie | | 2005 | Thesis - Bachelor thesis |
| Correlation nonstructural (NS)4B amino acid variations with initial viral kinetics during interferon-alpha-based therapy in HCV-1b-infected patients In: Journal of Viral Hepatitis [14], 338-349 | [Welker, Martin W.] [Hofmann, Wolf-Peter] [Welsch, Christoph] [von Wagner, Michael] [Herrmann, Eva] [Lengauer, Thomas] [Zeuzem, Stefan] [Sarrazin, Christoph] | 2007 | Journal Article | ||
| CoryneRegNet 6.0 - Updated database content, new analysis methods and novel features focusing on community demands In: Nucleic Acids Research [40], D610-D614 | Pauling, Josch Röttger, Richard [Tauch, Andreas] [Azevedo, Vasco] Baumbach, Jan | | 2012 | Journal Article | |
| Cost-effective screening for differentially expressed genes in microarray experiments based on normal mixtures In: Austrian Journal of Statistics [32], 225-238 | Rahnenführer, Jörg [Futschik, Andreas] | 2003 | Journal Article | ||
| CpG Island Mapping by Epigenome Prediction In: PLoS Computational Biology [3], 1055-1070 | Bock, Christoph [Walter, Jörn] [Paulsen, Martina] Lengauer, Thomas | | 2007 | Journal Article |
| CpG Island Methylation in Human Lymphocytes Is Highly Correlated with DNA Sequence, Repeats, and Predicted DNA Structure In: PLoS Genetics [2], 0243-0252 | Bock, Christoph [Paulsen, Martina] [Tierling, Sascha] [Mikeska, Thomas] Lengauer, Thomas [Walter, Jörn] | 2006 | Electronic Journal Article | |
| Current V3 genotyping algorithms are inadequate for predicting X4 co-receptor usage in clinical isolates In: AIDS [21], F19-F26 | [Low, Andrew J.] [Dong, Winnie] [Chan, Dennison] Sing, Tobias [Swanstrom, Ronald] [Jensen, Mark] [Pillai, Satish] [Good, Benjamin] [Harrigan, P. Richard] | | 2007 | Journal Article | |
| Das Arevir-Projekt : neue Wege zur Optimierung von Anti-HIV-Therapien In: Resistenz in der HIV-Therapie : Diagnostik und Management, 94-98 | Beerenwinkel, Niko | [Oette, Mark] [Kaiser, Rolf] [Häussinger, Dieter] | 2004 | Part of a Book | |
| DASMIweb: online integration, analysis and assessment of distributed protein interaction data In: Nucleic Acids Research [37], W122-W128 | Blankenburg, Hagen Ramírez, Fidel Büch, Joachim Albrecht, Mario | | 2009 | Electronic Journal Article | |
| DASMI: exchanging, annotating and assessing molecular interaction data In: Bioinformatics [25], 1321-1328 | Blankenburg, Hagen [Finn, Robert D.] [Prlić, Andreas] [Jenkinson, Andrew M.] Ramírez, Fidel Emig, Dorothea Schelhorn, Sven-Eric Büch, Joachim Lengauer, Thomas Albrecht, Mario | 2009 | Journal Article | ||
| Dealing with sparse data in predicting outcomes of HIV combination therapies In: Bioinformatics [26], 2085-2092 | Bogojeska, Jasmina [Bickel, Steffen] Altmann, André Lengauer, Thomas | | 2010 | Journal Article |
| Decomposing Protein Networks Into Domain-Domain Interactions Eberhard Karls University Tübingen | Huthmacher, Carola | 2006 | Thesis - other | ||
| Decomposing protein networks into domain-domain interactions In: Bioinformatics [21], ii220-ii221 | Albrecht, Mario Huthmacher, Carola [Tosatto, Silvio C.E.] Lengauer, Thomas | | 2005 | Journal Article | |
| Decreased HIV diversity after allogeneic stem cell transplantation of an HIV-1 infected patient: a case report. In: Virology Journal [7], 55,1-55,9 | [Kamp, Christel] [Wolf, Timo] [Bravo, Ignacio G] [Kraus, Benjamin] [Krause, Birgit] [Neumann, Britta] [Winskowsky, Gudrun] Thielen, Alexander [Werner, Albrecht] [Schnierle, Barbara S] | 2010 | Electronic Journal Article | ||
| Deep Sequencing to Infer HIV-1 Co-Receptor Usage: Application to Three Clinical Trials of Maraviroc in Treatment-Experienced Patients In: The Journal of Infectious Diseases [203], 237-245 | [Swenson, Luke C.] [Mo, Theresa] [Dong, Winnie W. Y.] [Zhong, Xiaoyin] [Woods, Conan K.] [Jensen, Mark A.] Thielen, Alexander [Chapman, Douglass] [Lewis, Marilyn] [James, Ian] [Heera, Jayvant] [Valdez, Hernan] [Harrigan, P. Richard] | | 2011 | Journal Article | |
| Deep V3 sequencing for HIV type 1 tropism in treatment-naive patients: a reanalysis of the MERIT trial of maraviroc. In: Clinical Infectious Diseases [53], 732-742 | [Swenson, Luke C] [Mo, Theresa] [Dong, Winnie WY] [Zhong, Xiaoyin] [Woods, Conan K] Thielen, Alexander [Jensen, Mark A] [Knapp, David JHF] [Chapman, Douglass] [Lewis, Marilyn] [James, Ian] [Heera, Jayvant] [Valdez, Hernan] [Harrigan, P Richard] | 2011 | Journal Article | ||
| Density Parameter Estimation for Finding Clusters of Homologous Proteins - Tracing Actinobacterial Pathogenicity Life Styles In: Bioinformatics [29], 215-222 | Röttger, Richard Kalaghatgi, Prabhav Sun, Peng [de Castro Soares, Siomar] [Azevedo, Vasco] [Wittkop, Tobias] Baumbach, Jan | | 2013 | Journal Article | |
| Derivation of a scoring function for crystal structure prediction In: Acta Crystallographica [A57], 442-450 | [Apostolakis, Joannis] [Hofmann, D.] Lengauer, Thomas | 2001 | Journal Article | ||
| Detection of Novel Amplicons in Prostate Cancer by Comprehensive Genomic Profiling of Prostate Cancer Cell Lines Using Oligonucleotide-Based ArrayCGH In: PLoS ONE [2], e769 | [Kamradt, Jörn] [Jung, Volker] [Wahrheit, Kerstin] Tolosi, Laura Rahnenführer, Jörg [Schilling, Martin] [Walker, Robert] [Davis, Sean] [Stöckle, Michael] [Meltzer, Paul] [Wullich, Bernd] | | 2007 | Electronic Journal Article | |
| Determination of clinically relevant cutoffs for HIV-1 phenotypic resistance estimates through a combined analysis of clinical trial and cohort data In: Abstract Book. 8th European Drug Resistance Workshop, 46 | Altmann, Andre Pironti, Alejandro Perner, Juliane Büch, Joachim Lengauer, Thomas | [Schapiro, Jonathan] [Boucher, Charles] | 2010 | Poster | |
| Determination of HIV-1 co-receptor usage in German patients – comparison of genotypic methods with the TROFILE® phenotypic assay In: Abstracts of the Ninth International Congress on Drug Therapy in HIV Infection, 123 | [Obermeier, Martin] [Berg, Thomas] [Sichtig, Nadine] [Braun, Patrick] [Däumer, Martin] [Walter, Hauke] [Noah, Christian] [Wolf, Eva] [Müller, Harm] [Stürmer, Martin] Thielen, Alexander [Kaiser, Rolf] | | 2008 | Poster | |
| Determination of HIV-1 coreceptor usage in German patients - comparison of genotypic methods with the TROFILE phenotypic assay In: Antiviral Therapy, A112 | [Obermeier, Martin] [Sichtig, Nadine] [Braun, Patrick] [Däumer, Martin] [Walter, Hauke] [Noah, Christian] [Wolf, Eva] [Müller, Harm] [Stürmer, Martin] [Kaiser, Rolf] Thielen, Alexander | 2008 | Poster | ||
| Determining human immunodeficiency virus coreceptor use in a clinical setting: Degree of correlation between two phenotypic assays and a bioinformatic model In: Journal of Clinical Microbiology [45], 279-284 | [Skrabal, Katharina] [Low, Andrew J.] [Dong, Winnie] Sing, Tobias [Cheung, Peter K.] [Mammano, Fabrizio] [Harrigan, P. Richard] | | 2007 | Journal Article |
| Development of a Smith-Waterman-Like Multi-Aspect Alignment Tool Universität des Saarlandes | Frings, Oliver | 2006 | Thesis - Bachelor thesis | ||
| Development of a fast geometry-based screening compound prefiltering technique Universität des Saarlandes | Pfeifer, Susanne | | 2006 | Thesis - Bachelor thesis | |
| Development of a new tool for predicting the structure of host-guest complexes In: Proceedings of the 2nd Summer School Medicinal Chemistry Regensburg 2004, 83 | Steffen, Andreas Kämper, Andreas Lengauer, Thomas | 2004 | Poster | ||
| Development of Computational Methods for Analysis of Metabolic Profiling Data In: Proceedings of International Conference on Systems Biology (ICSB 2006), Japan, 42-42 | Talwar, Priti Lengauer, Thomas [Wittmann, Christoph] [Velagapudi, V. R.] [Heinzle, Elmar] | | 2006 | Proceedings Article | |
| Development of Computational Methods for Metabolic Network Analysis based on Metabolomics Data Universität des Saarlandes | Talwar, Priti | 2008 | Thesis - PhD thesis | ||
| DIDO: a disease-determinants ontology from web sources In: Proceedings of the 20th International Conference on World Wide Web (WWW 2011), 237-240 | Nebot, Victoria Ye, Min Albrecht, Mario Eom, Jae-Hong Weikum, Gerhard | | 2011 | Proceedings Article | |
| Dimerization of the hepatitis C virus nonstructural protein 4B depends on the integrity of an aminoterminal basic leucine zipper In: Protein Science [19], 1327-1336 | [Welker, Martin-Walter] [Welsch, Christoph] [Meyer, Aline] Antes, Iris Albrecht, Mario [Forestier, Nicole] [Kronenberger, Bernd] Lengauer, Thomas [Piiper, Albrecht] [Zeuzem, Stefan] [Sarrazin, Christoph] | 2010 | Journal Article | ||
| Disease-associated variants in PYPAF1 and NOD2 result in similar alterations of conserved sequence In: Bioinformatics [19], 2171-2175 | Albrecht, Mario Lengauer, Thomas [Schreiber, Stefan] | | 2003 | Journal Article | |
| Disease gene prioritization by combining network information and functional knowledge Universität des Saarlandes | Kacprowski, Tim | 2011 | Thesis - Masters thesis | ||
| Dissection of the inflammatory bowel disease transcriptome using genome-wide cDNA microarrays identifies novel candidate disease genes In: PLoS Medicine [2], 771-787 | [Costello, Christine M.] [Mah, Nancy] [Häsler, Robert] [Rosenstiel, Philip] [Waetzig, Georg H.] Hahn, Andreas [Lu, Tim] [Gurbuz, Yesim] [Nikolaus, Susanna] Albrecht, Mario [Hampe, Jochen] [Lucius, Ralph] [Klöppel, Günther] [Eickhoff, Holger] [Lehrach, Hans] Lengauer, Thomas [Schreiber, Stefan] | | 2005 | Journal Article | |
| Diversity and complexity of HIV-1drug resistance: A bioinformatics approach to predicting phenotype from genotype In: Proceedings of the National Academy of Sciences [99], 8271-8276 | Beerenwinkel, Niko [Schmidt, Barbara] [Walter, Hauke] [Kaiser, Rolf] Lengauer, Thomas [Hoffmann, Daniel] [Korn, Klaus] [Selbig, Joachim] | 2002 | Journal Article | ||
| Diversity and functional plasticity of eukaryotic selenoproteins: Identification and characterization of the SelJ family In: Proceedings of the National Academy of Sciences [102], 16188-16193 | [Castellano, Sergi] [Lobanov, Alexey V.] [Chapple, Charles] [Novoselov, Sergey V.] Albrecht, Mario [Hua, Deame] [Lescure, Alain] Lengauer, Thomas [Krol, Alain] [Gladyshev, Vadim N.] [Guigó, Roderic] | | 2005 | Journal Article | |
| DNA methylation analysis of chromosome 21 gene promoters at single base pair and single allele resolution In: PLoS Genetics [5], e1000438:1-e1000438:15 | [Zhang, Yingying] [Rohde, Christian] [Tierling, Sascha] [Jurkowski, Tomasz P.] Bock, Christoph [Santacruz, Diana] [Ragozin, Sergey] [Reinhardt, Richard] [Groth, Marco] [Walter, Jörn] [Jeltsch, Albert] | 2009 | Electronic Journal Article | |
| DNA methylation biomarkers in cancer: Progress towards clinical implementation In: Expert Reviews of Molecular Diagnostics [12], 473-487 | [Mikeska, Thomas] Bock, Christoph [Do, Hongdo] [Dobrovic, Alexander] | | 2012 | Journal Article | |
| Docking Analysis and Resistance Evaluation of Clinically Relevant Mutations Associated with the HIV-1 Nonnucleoside Reverse Transcriptase Inhibitors Nevirapine, Efavirenz and Etravirine In: ChemMedChem [6], 2203-2213 | [Alcaro, Stefano] [Alteri, Claudia] [Artese, Anna] [Ceccherini-Silberstein, Francesca] [Costa, Giosuè] [Ortuso, Francesco] [Forbici, Federica] [Santoro, Maria Mercedes] [Parrotta, Lucia] [Flandre, Philippe] [Descamps, Diane] [Calvez, Vincent] [Marcelin, Anne-Genevieve] [Perno, Carlo Federico] Sing, Tobias [Svicher, Valentina] | 2011 | Journal Article | ||
| Docking and scoring with alternative side-chain conformations In: Proteins: Structure, Function, and Bioinformatics [74], 712-726 | Hartmann, Christoph Antes, Iris Lengauer, Thomas | | 2009 | Journal Article | |
| Docking into the homology models of CYP11B1 and CYP11B2 In: Proceedings of the German Conference on Bioinformatics 2003, 13 | Antes, Iris Lengauer, Thomas Mueller, Ursula [Ulmschneider, Sarah] [Hartmann, Rolf] | 2003 | Poster | ||
| Docking of Bacterial Cell-Wall Fragments into Glycopeptide Antibiotics In: From Genes to Drugs via Crystallography: 33rd crytallographic course at the E. Majorana Center, 49 | Kämper, Andreas [Apostolakis, Joannis] Lengauer, Thomas | [Borkakoti, Neera] | 2002 | Poster | |
| Docking of Ligands into Artificial Receptors | Kämper, Andreas [Apostolakis, Joannis] [Rarey, Matthias] [Marian, Christel Maria] Lengauer, Thomas | 2001 | Miscellaneous | ||
| Docking of Ligands into Artificial Receptors In: Electronically Excited Molecules: Structure and Dynamics, 37th Symposium for Theoretical Chemistry, P76 | [Kämper, Andreas] [Apostolakis, Joannis] [Rarey, Matthias] [Marian, Christel Maria] [Lengauer, Thomas] | | 2001 | Proceedings Article | |
| Docking of Ligands into Molecular Tweezers and Molecular Clips In: Workshop of the SFB 624 'Templates', ?-? | Kämper, Andreas Lengauer, Thomas | 2002 | Poster | ||
| Docking of monosaccharids into the wild type and mutants of pyranose 2-oxidase Universität des Saarlandes | Hobler, Anna | | 2006 | Thesis - Bachelor thesis | |
| Docking studies to investigate the effect of correlated mutations in the HIV-Protease on the drug resistance of HIV Universität des Saarlandes | Reimer, Daniela | 2006 | Thesis - Bachelor thesis | ||
| Docking studies to investigate the effect of correlated mutations in the HIV-Protease on the drug resistance of HIV Universität des Saarlandes | Djoumbou, Yannick | | 2005 | Thesis - Bachelor thesis | |
| Dynamic escape of pre-existing raltegravir-resistant HIV-1 from raltegravir selection pressure In: Antiviral Research [88], 281-286 | [Codoñer, Francisco M] [Pou, Christian] Thielen, Alexander [García, Federico] [Delgado, Rafael] [Dalmau, David] [Santos, José Ramon] [Buzón, Maria José] [Martínez-Picado, Javier Alvarez-Tejado, Miguel] [Clotet, Bonaventura] [Ruiz, Lidia] [Paredes, Roger] | 2010 | Journal Article | ||
| Dynamics of NRTI resistance mutations during therapy interruption In: AIDS Research and Human Retroviruses [25], 57-64 | [Trignetti, Maria] Sing, Tobias [Svicher, Valentina] [Santoro, Maria Mercedes] [Forbici, Federica] [D'Arrigo, Roberta] [Bellocchi, Maria Concetta] [Santoro, Mario] [Marconi, Patrizia] [Zaccarelli, Mauro] [Trotta, Maria Paola] [Bellagamba, Rita] [Narciso, Pasquale] [Antinori, Andrea] Lengauer, Thomas [Perno, Carlo Federico] [Ceccherini-Silberstein, Francesca] | | 2009 | Journal Article | |
| DynaPred: A structure and sequence based method for the prediction of MHC class I binding peptide sequence and conformations In: Bioinformatics [22], 16-24 | Antes, Iris Siu, Shirley Weng-In Lengauer, Thomas | 2006 | Journal Article | |
| ECLIPPSE: Environment for Chemical Library Inspection, Pre- and Postprocessing, and Screening Evaluation. User Guide | Kämper, Andreas Lengauer, Thomas | | 2003 | Manual | |
| Editorial: Selection of papers of the German Conference of Bioinformatics (GCB) 2005 In: Bioinformatics [22], 1 | [Torda, Andrew E.] Lengauer, Thomas | 2006 | Journal Article | |
| Effect of ribavirin on the frequency of RNAse L cleavage sites within the hepatitis C viral genome In: Journal of Viral Hepatitis [17], 217-221 | [Mihm, Ulrike] [Hofmann, W.P.] Welsch, Christoph [Polta, A.] Lengauer, Thomas [Zeuzem, Stefan] [Sarrazin, Christoph] [Herrmann, E.] | | 2010 | Journal Article | |
| Efficacy of antiretroviral therapy switch in HIV-infected patients: A 10-year analysis of the EuResist cohort In: Intervirology [55], 160-166 | [Oette, Mark] [Schulter, Eugen] [Rosen-Zvi, Michal] [Peres, Yardena] [Zazzi, Maurizio] [Sonnerborg, Anders] [Struck, Daniel] Altmann, Andre [Kaiser, Rolf] | 2012 | Journal Article | ||
| Efficient Clustering Methods for Tumor Classification with Microarrays In: Proceedings of the 26th Annual Conference of the Gesellschaft für Klassifikation, 670-679 | Rahnenführer, Jörg | [Schader, Martin] [Gaul, Wolfgang] [Vichi, Maurizio] | 2003 | Proceedings Article | |
| Efficient conformational analysis of synthetic receptors with macrocyclic and fused ring systems In: Synthetic Receptors 2005: Second World Congress on Synthetic Receptors, O4 | Kämper, Andreas Kaspar, Melanie Lengauer, Thomas | 2005 | Proceedings Article | ||
| Efficient Online Transcription Factor Binding Site Adjustment by Integrating Transitive Graph Projection with MoRAine 2.0 In: Special Issue: 6th International Symposium on Integrative Bioinformatics, 117,1-117,11 | [Wittkop, Tobias] [Rahmann, Sven] Baumbach, Jan | | 2010 | Electronic Proceedings Article | |
| Endogenous or exogenous spreading of HIV-1 in Nordrhein-Westfalen, Germany, investigated by phylodynamic analysis of the RESINA Study cohort In: Medical Microbiology and Immunology [201], 259-269 | Lawyer, Glenn [Schülter, Eugen] [Kaiser, Rolf] [Reuter, Stefan] [Oette, Mark] Lengauer, Thomas | 2012 | Journal Article | |
| Ensemble methods for classification in cheminformatics In: Journal of Chemical Information and Modeling [44], 1971-1978 | Merkwirth, Christian [Mauser, H.] [Schulz-Gasch, T.] [Roche, O.] [Stahl, M.] Lengauer, Thomas | | 2004 | Journal Article | |
| Env-wide analysis of coreceptor determining sites and subtype-specific differences in HIV-1 Universität des Saarlandes | König, Eva | 2010 | Thesis - Bachelor thesis | ||
| EpiExplorer: live exploration and global analysis of large epigenomic datasets In: Genome Biology [13], R96,1-R96,14 | Halachev, Konstantin [Bast, Hannah] Albrecht, Felipe Lengauer, Thomas Bock, Christoph | | 2012 | Electronic Journal Article |
| EpiExplorer: live exploration and global analysis of large epigenomic datasets In: Genome Biology [13], R96,1-R96,14 | Halachev, K. [Bast, H.] Albrecht, F. Lengauer, Thomas Bock, Christoph | 2012 | Journal Article | ||
| Epigenetic biomarker development In: Epigenomics [1], 99-110 | Bock, Christoph | | 2009 | Journal Article |
| Epigenom-Karten erstellen und nutzen In: BIOspektrum [18], 138-141 | Bock, Christoph Lengauer, Thomas | 2012 | Journal Article | ||
| EpiGRAPHregression: A toolkit for (epi-)genomic correlation analysis and prediction of quantitative attributes Universität des Saarlandes | Halachev, Konstantin | | 2006 | Thesis - Masters thesis | |
| EpiGRAPH: user-friendly software for statistical analysis and prediction of (epi)genomic data In: Genome Biology [10], R14.1-R14.14 | Bock, Christoph Halachev, Konstantin Büch, Joachim Lengauer, Thomas | 2009 | Journal Article | |
| Erosion of dosage compensation impacts human iPSC disease modeling In: Cell Stem Cell [10], 595-609 | [Mekhubad, Shila] Bock, Christoph [de Boer, A. Sophie] [Kiskinis, Evangelos] [Meissner, Alexander] [Eggan, Kevin] | | 2012 | Journal Article | |
| Erratum to: Prevalence and characteristics of hepatitis B and C virus infections in treatment-naïve HIV-infected patients. In: Medical Microbiology and Immunology [200], 51-51 | [Reuter, Stefan] [Oette, Mark] [Wilhelm, Frank Clemens] Beggel, Bastian [Kaiser, Rolf] [Balduin, Melanie] [Schweitzer, Finja] [Verheyen, Jens] [Adams, Ortwin] Lengauer, Thomas [Faetkenheuer, Gerd] [Pfister, Herbert] [Haeussinger, Dieter] | 2011 | Journal Article | |
| Estimating and Using the Uncertainty in the Phenotypic Resistance Assay of the Hepatitis B Virus to Improve IC-50 Prediction from Genotype Universität des Saarlandes | Reuter, Kerstin | | 2011 | Thesis - Bachelor thesis | |
| Estimating cancer survival and clinical outcome based on genetic tumor progression scores In: Bioinformatics [21], 2438-2446 | Rahnenführer, Jörg Beerenwinkel, Niko [Schulz, Wolfgang A.] [Hartmann, Christian] [von Deimling, Andreas] [Wullich, Bernd] Lengauer, Thomas | 2005 | Journal Article | ||
| Estimating effective drug combinations against drug-resistant mutants from genotypes In: Proceedings of the 1st European HIV Drug Resistamce Workshop, 18-18 | Beerenwinkel, Niko [Däumer, Martin] [Kaiser, Rolf] [Walter, Hauke] [Korn, Klaus] [Hoffmann, Daniel] [Selbig, Joachim] Lengauer, Thomas | | 2003 | Proceedings Article | |
| Estimating evolutionary pathways to 7CXCR4 usage from cross-sectional data In: Abstracts presented at the XVIII International HIV Drug Resistance Workshop : Basic Principles & Clinical Implications, A16-A16 | Thielen, Alexander Altmann, André Bogojeska, Jasmina [Kaiser, Rolf] Lengauer, Thomas | 2009 | Poster | ||
| Estimating HIV evolutionary pathways and the genetic barrier to drug resistance In: The Journal of Infectious Diseases [191], 1953-1960 | Beerenwinkel, Niko [Däumer, Martin] Sing, Tobias Rahnenführer, Jörg Lengauer, Thomas [Selbig, Joachim] [Hoffmann, Daniel] [Kaiser, Rolf] | | 2005 | Journal Article | |
| Estimating the local variance of protein structure models Universität des Saarlandes | Weisser, Hendrik | 2007 | Thesis - Masters thesis | ||
| Etravirine in protease inhibitor-free antiretroviral combination therapies In: Journal of the International AIDS Society, 155-156 | [Schuelter, Eugen] [Lübcke, Nadine] [Jensen, Björn] [Zazzi, Maurizio] [Sönnerborg, Anders] Lengauer, Thomas [Incardona, Francesca] [Camacho, Richardo] [Schmit, J] [Clotet, Bonaventura] [Kaiser, Rolf] Pironti, Alejandro | [Kippax, Susan] [Salif Sow, Papa] [Wainberg, Mark] [Heidari, Shirin] | 2012 | Poster | |
| EuResist: exploration of multiple modeling techniques for prediction of response to treatment In: Proceedings of the 5th European HIV Drug Resistance Workshop, - | [Zazzi, Maurizio] [Aharoni, Ehud] [Altmann, Andre] [Baszó, Fulop] [Bidgood, Penny] [Borgulya, Gabór] [Denholm-Prince, J] [Fielder, M] [Kaiser, Rolf] [Kent, Carmel] [Lengauer, Thomas] [Nepusz, T] [Neuvirth, Hanni] [Peres, Yardena] [Petroczi, Andrea] [Prosperi, Mattia] [Romano, L] [Rosen-Zvi, Michal] [Schülter, Eugen] Sing, Tobias [Sonnerborg, Andras] [Thompson, R] [Ulivi, G] [Zalány, L] [Incardona, Francesca] | 2007 | Poster | ||
| European Journal of Medical Research | | Lengauer, Thomas [Oette, M.] [Selbig, J.] [Hoffmann, D.] [Poggensee, G.] [Hamouda, O.] [Häussinger, D.] [Kaiser, R.] | 2007 | Journal | |
| Evidence for Reductive Genome Evolution and Lateral Acquisition of Virulence Functions in two Corynebacterium pseudotuberculosis strains In: PLoS One [6], e18551 | [Ruiz, Jeronimo C.] [D'Afonseca, Vivian] [Silva, Artur] [Ali, Amjad] [Pinto, Anne C.] [Santos, Anderson R.] [Rocha, Aryanne A. M. C.] [Lopes, Debora O.] [Dorella, Fernanda A.] [Pacheco, Luis G. C.] [Costa, Marcilia P.] [Turk, Meritxell Z.] [Seyffert, Nubia] [Moraes, Pablo M. R. O.] [Soares, Siomar C.] [Almeida, Sintia S.] [Castro, Thiago L. P.] [Abreu, Vinicius A. C.] [Trost, Eva] Baumbach, Jan [Tauch, Andreas] [Schneider, Maria P. C.] [McCulloch, John] [Cerdeira, Louise T.] [Ramos, Rommel T. J.] [Zerlotini, Adhemar] [Dominitini, Anderson] [Resende, Daniela M.] [Coser, Elisangela M.] [Oliveira, Luciana M.] [Pedrosa, Andre L.] [Vieira, Carlos U.] [Guimaraes, Claudia T.] [Bartholomeu, Daniela C.] [Oliveira, Diana M.] [Santos, Fabricio R.] [Rabelo, Elida Mara] [Lobo, Francisco P.] [Franco, Gloria R.] [Costa, Ana Flavia] [Castro, Ieso M.] [Dias, Silvia Regina] [Ferro, Jesus A.] [Ortega, Jose Miguel] [Paiva, Luciano V.] [Goulart, Luiz R.] [Almeida, Juliana Franco] [Ferro, Maria Ines] [Carneiro, Newton P.] [Falcao, Paula R. K.] [Grynberg, Priscila] [Teixeira, Santuza M. R.] [Brommonschenkel, Sergio] [Oliveira, Sergio C.] [Meyer, Roberto] [Moore, Robert J.] [Miyoshi, Anderson] [Oliveira, Guilherme C.] [Azevedo, Vaco] | 2011 | Electronic Journal Article | ||
| Evolucion de la Evolucionalidad In: Biologos lejos del equilibrio: Nuevas metaforas evolutivas, 59-87 | Ramírez, Fidel | Ramírez, Fidel [Balbin, Alejandro] [Betancourt-Morales, Andres] [Mora-Oberlaender, Julian] [Angel-Rodriguez, Melina] | 2004 | Part of a Book | |
| Evolution of Drug Resistance in HIV In: Bioinformatics - From Genomes to Therapies 3. The Holy Grail: Molecular Function, 1457-1496 | Roomp, Kirsten | Lengauer, Thomas | 2007 | Part of a Book | |
| Evolution of HIV resistance during treatment interruption in experienced patients and after restarting a new therapy In: J Clin Virol [34], 277-287 | [Balduin, Melanie] Beerenwinkel, Niko [Sierra, Saleta] [Däumer, Martin] [Rockstroh, Jürgen] [Oette, Mark] [Fätkenheuer, Gerd] [Kupfer, Bernd] [Hoffmann, Daniel] [Selbig, Joachim] [Pfister, Herbert] [Kaiser, Rolf] | | 2005 | Journal Article | |
| Evolution of raltegravir resistance during therapy In: Journal of antimicrobial chemotherapy [64], 25-32 | [Sichtig, Nadine] [Sierra, Saleta] [Kaiser, Rolf] [Däumer, Martin] [Reuter, Stefan] [Schülter, Eugen] Altmann, André [Fätkenheuer, Gerd] [Dittmer, Ulf] [Pfister, Herbert] [Esser, Stefan] | 2009 | Journal Article | ||
| Expression analysis for inflammatory bowel disease In: Proceedings of the n?th Conference on, ? | Hahn, Andreas [Costello, Christine M.] [Lu, Tim] Lengauer, Thomas [Schreiber, Stefan] | | 2002 | Poster |
| Expression analysis for inflammatory bowel disease In: Workshop Poster Competition, ? | Hahn, Andreas [Costello, Christine M.] [Lu, Tim] Lengauer, Thomas [Schreiber, Stefan] | 2004 | Poster | ||
| Expression and Functional Analyses of Novel Mutations ot ATP-Binding Cassette Transporter-1 in Japanese Patients with High-Density Lipoprotein Deficiency In: Biochemical and Biophysical Research Communications [290], 713-721 | [Nishida, Yoshiharu] [Hirano, Kenichi] [Tsukamoto, Kosuke] [Nagano, Makoto] [Ikegami, Chiaki] Roomp, Kirsten [Ishihara, Mitsuaki] [Sakane, Naoki] [Zhang, Zhongyan] [Tsujii, Ken-ichi] [Matsuyama, Akifumi] [Ohama, Tohru] [Matsuura, Fumihiko] [Ishigami, Masato] [Sakai, Naohiko] [Hiraoka, Hisatoyo] [Hattori, Hiroaki] [Wellington, Cheryl L.] [Yoshida, Yoshihide] [Misugi, Susumu] [Hayden, Michael R.] [Egashira, Toru] [Yamashita, Shizuya] [Matsuzawa, Yuji] | | 2002 | Journal Article | |
| Expression pattern analysis of transcribed HERV sequences is complicated by ex vitvo recombination In: Retrovirology [4], 39 | [Flockerzi, Aline] Maydt, Jochen [Frank, Oliver] [Ruggieri, Alessia] [Maldener, Esther] [Seifarth, Wolfgang] [Medstrand, Patrik] Lengauer, Thomas [Meyerhans, Andreas] [Leib-Mosch, Christine] [Meese, Eckart] [Mayer, Jens] | 2007 | Journal Article | |
| Extension and robustness of Transitivity Clustering for protein-protein interaction network analysis In: Internet Mathematics [7], 255-273 | [Wittkop, Tobias] [Rahmann, Sven] Roettger, Richard [Boecker, Sebastian] Baumbach, Jan | | 2011 | Journal Article | |
| Extracting pathways from biological networks incorporating omics data, introducing a webinterface for KeyPathwayMiner Universität des Saarlandes | Müller, Joachim | 2012 | Thesis - Masters thesis | ||
| Extracting Sets of Chemical Substructures and Protein Domains Governing Drug-Target Interactions In: Journal of Chemical Information and Modeling [51], 1183-1194 | [Yamanishi, Yoshihiro] [Pauwels, Edouard] Saigo, Hiroto [Stovent, Veronique] | | 2011 | Journal Article | |
| Factor interaction analysis for chromosome 8 and DNA methylation alterations highlights innate immune response suppression and cytoskeletal changes in prostate cancer In: Molecular Cancer [6], 1-16 | [Schulz, Wolfgang A.] Alexa, Adrian [Jung, Volker] [Hader, Christiane] [Hoffmann, Michele J.] [Yamanaka, Masanori] [Fritzsche, Sandy] [Wlazlinski, Agnes] [Müller, Mirko] Lengauer, Thomas [Engers, Rainer] [Florl, Andrea R.] [Wullich, Bernd] Rahnenführer, Jörg | 2007 | Journal Article | |
| Feature Prints: A new method for calculating molecular similarities Universität des Saarlandes | Binsl, Thomas | | 2006 | Thesis - Masters thesis | |
| Fifteen years of env C2V3C3 evolution in six individuals clonally infected with human immunodeficiency virus type 1 In: Journal of Medical Virology [79], 1629-1639 | [Kupfer, Bernd] Sing, Tobias Schüffler, Peter [Hall, Rabea] [Kurz, Ralf] [McKeown, Astrid] [Schneweis, Karl-Eduard] [Eberl, Wolfgang] [Oldenburg, Johannes] [Brackmann, Hans H.] [Rockstroh, Jürgen K.] [Spengler, Ulrich] Däumer, Martin [Kaiser, Rolf] Lengauer, Thomas [Matz, Bertfried] | 2007 | Journal Article | ||
| Finding local similarities in gene expression patterns between partially reprogrammed cells and know cell types using a module network approach Universität des Saarlandes | Perner, Juliane | | 2010 | Thesis - Masters thesis | |
| Finding Regions of Aberrant DNA Copy Number Associated With Tumor Phenotype Universität des Saarlandes | Tolosi, Laura | 2012 | Thesis - PhD thesis | ||
| Finding scaffold proteins in interactomes In: Trends in Cell Biology [20], 2-4 | Ramírez, Fidel Albrecht, Mario | | 2010 | Journal Article | |
| Finding the Hairpin in the Haystack: Towards an High Throughput in Silico Pipeline for Aptamer Motif Identification using SELEX Data Universität des Saarlandes | Hoinka, Jan-Malte | 2011 | Thesis - Masters thesis | ||
| Finite iteration DT-CNN - new design and operation principles In: Proceedings (ISCAS-04) : 2004 IEEE International Symposium on Circuits and Systems. - Vol. 5, Blind signal processing, computer-aided network design, invited sessions, neural sytems and applications, power systems and power electronic circuits, 504-507 | Merkwirth, Christian [Bröcker, J.] [Ogorzalek, Maciej] Wichard, J.D. | | 2004 | Proceedings Article | |
| Finite iteration DT-CNN with stationary templates In: Proceedings of the 8th IEEE International Workshop on Cellular Neural Networks and their Applications (CNNA 2004), 459-464 | [Wichard, J.D.] [Ogorzalek, Maciej] Merkwirth, Christian [Bröcker, J.] | 2004 | Proceedings Article | ||
| FlexE: Efficient Molecular Docking Considering Protein Structure Variations In: Journal of Molecular Biology [308], 377-395 | Claussen, C. Buning, Christian [Rarey, Matthias] Lengauer, Thomas | | 2001 | Journal Article | |
| Flexible Docking of Ligands into Synthetic Receptors Using a Two-Sided Incremental Construction Algorithm In: Journal of Chemical Information and Modeling [46], 1695-1703 | Steffen, Andreas Kämper, Andreas Lengauer, Thomas | 2006 | Journal Article | ||
| Flexible docking under pharmacophore type constraints In: Journal of Computer-Aided Molecular Design [16], 129-149 | [Hindle, Sally A.] [Rarey, Matthias] [Buning, Christian] Lengauer, Thomas | | 2002 | Journal Article | |
| FlexR - A new tool for predicting the structure of synthetic host-guest complexes In: Synthetic Receptors 2005: Second World Congress on Synthetic Receptors, O7 | Steffen, Andreas Kämper, Andreas Lengauer, Thomas | Turner, A.P.F. | 2005 | Proceedings Article | |
| FlexR - Predicting the structure of host-guest complexes In: Proceedings of the Annual Meeting of the German Pharmaceutical Society - Joint Meeting 2004 (DPhG 2004), 130 | Steffen, Andreas Kämper, Andreas Lengauer, Thomas | | 2004 | Poster | |
| From Genomes to Drugs | Lengauer, Thomas | 2001 | Book | ||
| From Protein Structure to Function Universität des Saarlandes | Sommer, Ingolf | | 2009 | Thesis - Habilitation thesis |
| Fully Automated Flexible Docking of Ligands into Flexible Synthetic Receptors Using Forward and Inverse Docking Strategies In: Journal of Chemical Information and Modeling [46], 903-911 | Kämper, Andreas [Apostolakis, Joannis] [Rarey, Matthias] [Marian, Christel Maria] Lengauer, Thomas | 2006 | Journal Article | ||
| Fun2Struc-A Tool For Predicting Protein Structure Classes from Function Predictions Universität des Saarlandes | Eyrisch, Susanne | | 2004 | Thesis - Bachelor thesis |
| Functional Analysis of a Potassium-Chloride Co-Transporter 3 (SLC12A6) Promoter Polymorphism Leading to an Additional DNA Methylation Site In: Neuropsychopharmacology [34], 458-467 | [Moser, Dirk] [Ekawardhani, Savira] [Kumsta, Robert] [Palmason, Haukur] Bock, Christoph [Athanassiadou, Zoi] [Lesch, Klaus-Peter] [Meyer, Jobst] | 2009 | Journal Article | |
| Functional characterization of human genes from exon expression and RNA interference results In: Bioinformatics and Drug Discovery, 33-53 | Emig, Dorothea Blankenburg, Hagen Ramírez, Fidel Albrecht, Mario | [Larson, Richard S] | 2012 | Part of a Book | |
| Functional evaluation of domain-domain interactions and human protein interaction networks In: Bioinformatics [23], 859-865 | Schlicker, Andreas Huthmacher, Carola Ramírez, Fidel Lengauer, Thomas Albrecht, Mario | 2007 | Journal Article | |
| Functional evaluation of domain-domain interactions and human protein interaction networks In: German Conference on Bioinformatics (GCB 2006), 115-126 | Schlicker, Andreas Huthmacher, Carola Ramírez, Fidel Lengauer, Thomas Albrecht, Mario | [Huson, Daniel] [Kohlbacher, Oliver] [Lupas, Andrei] [Nieselt, Kay] [Zell, Andreas] | 2006 | Proceedings Article | |
| Functional Profiling in Metagenomics Universität des Saarlandes | Weimann, Aaron | 2011 | Thesis - Masters thesis | ||
| Functional Site Scaffolds Universität des Saarlandes | Zimmer, Tobias | | 2006 | Thesis - Bachelor thesis | |
| FunSimMat update: new features for exploring functional similarity In: Nucleic Acids Research [38], D244-D248 | Schlicker, Andreas Albrecht, Mario | 2010 | Journal Article | ||
| FunSimMat: a comprehensive functional similarity database In: Nucleic Acids Research [36], D434-D439 | Schlicker, Andreas Albrecht, Mario | | 2008 | Journal Article |
| Future Trends In: Bioinformatics - From Genomes to Therapies 3. The Holy Grail: Molecular Function, 1651-1687 | Lengauer, Thomas | Lengauer, Thomas | 2007 | Part of a Book | |
| Generating Frequency Profiles from Multiple Structure Alignments Universität des Saarlandes | Weiss, Julia | | 2005 | Thesis - Bachelor thesis |
| Generating Molecular Hashcodes for Finding Duplicates in Virtual Screening Libraries Universität des Saarlandes | Nickels, Stefan | 2005 | Thesis - Bachelor thesis | |
| Genetic variation in DLG5 is associated with inflammatory bowel disease In: Nature Genetics [36], 376-380 | [Stoll, Monika] [Corneliussen, Brit] [Costello, Christine M.] [Waetzig, Georg H.] [Mellgard, Bjorn] [Koch, W. Andreas] [Rosenstiel, Philip] Albrecht, Mario [Croucher, Peter J.P.] [Seegert, Dirk] [Nikolaus, Susanna] [Hampe, Jochen] Lengauer, Thomas [Pierrou, Stefan] [Foelsch, Ulrich R.] [Mathew, Christopher G.] [Lagerstrom-Fermer, Maria] [Schreiber, Stefan] | | 2004 | Journal Article | |
| Genetics of Crohn disease, an archetypal inflammatory barrier disease In: Nature Reviews Genetics [6], 376-388 | [Schreiber, Stefan] [Rosenstiel, Philip] Albrecht, Mario [Hampe, Jochen] [Krawczak, Michael] | 2005 | Journal Article | ||
| GenLab: Laboratorio virtual de genetica In: Acta Biologica Colombiana [5], 45-48 | Ramírez, Fidel [Garcia, Sergio] | | 2000 | Journal Article | |
| Geno2pheno is predictive of short-term virological response In: Proceedings from the 5th International Workshop on HIV Drug Resistance & Treatment Strategies, 74-74 | Beerenwinkel, Niko Lengauer, Thomas [Däumer, Martin] [Sierra, S.] [Schmidt, Barbara] [Walter, Hauke] [Korn, Klaus] [Oette, Mark] Fätkenheuer, Gerd [Rockstroh, J.] [Hoffmann, Daniel] [Kaiser, Rolf] [Selbig, Joachim] | 2002 | Proceedings Article | ||
| Geno2pheno: a new machine learning approach to predicting phenotypic drug resistance from genotype In: Antiviral Therapy [6], 104 | Lengauer, Thomas [Beerenwinkel, Niko] [Schmidt, B.] [Walter, H.] [Kaiser, R.] [Hoffmann, D.] [Korn, K.] [Selbig, J.] | | 2001 | Journal Article | |
| Geno2pheno: A system for the interpretation of genotypic HIV Drug resistance tests In: IEEE Intelligent Systems [16], 35-41 | Beerenwinkel, Niko [Schmidt, Barbara] [Walter, Hauke] [Kaiser, Rolf] Lengauer, Thomas [Hoffmann, Daniel] [Korn, Klaus] [Selbig, Joachim] | 2001 | Journal Article | ||
| Geno2pheno: estimating phenotypic drug resistance from HIV-1 genotypes In: Nucleic Acids Research [31], 3850-3855 | Beerenwinkel, Niko [Däumer, Martin] [Oette, Mark] [Korn, Klaus] [Hoffmann, Daniel] [Kaiser, Rolf] Lengauer, Thomas [Selbig, Joachim] [Walter, Hauke] | | 2003 | Journal Article | |
| Geno2pheno[454]: A Web Server for the Prediction of HIV-1 Coreceptor Usage from Next-Generation Sequencing Data In: Intervirology [55], 113-117 | Thielen, Alexander Lengauer, Thomas | 2012 | Journal Article | ||
| Geno2pheno[coreceptor]: a tool for predicting coreceptor usage from genotype and for monitoring coreceptor-associated sequence alterations In: Proceedings of the 3rd European HIV Drug Resistance Workshop, - | Sing, Tobias Beerenwinkel, Niko [Kaiser, Rolf] [Hoffmann, Daniel] [Däumer, Martin] Lengauer, Thomas | | 2005 | Poster | |
| Genome-scale DNA methylation mapping of clinical samples at single-nucleotide resolution In: Nature Methods [7], 133-136 | [Gu, Hongcang] Bock, Christoph [Mikkelsen, Tarjei S.] [Jäger, Natalie] [Smith, Zachary D.] [Tomazou, Eleni] [Gnirke, Andreas] [Lander, Eric S.] [Meissner, Alexander] | 2010 | Journal Article | |
| Genome-wide association study for ulcerative colitis identifies risk loci at 7q22 and 22q13 (IL17REL) In: Nature Genetics [42], 292-294 | [Franke, Andre] [Balschun, Tobias] [Sina, Christian] [Ellinghaus, David] [Häsler, Robert] Mayr, Gabriele Albrecht, Mario [Wittig, Michael] [Buchert, Eva] [Nikolaus, Susanna] [Gieger, Christian] [Wichmann, H. Erich] [Sventoraityte, Jurgita] [Kupcinskas, Limas] [Onnie, Clive M.] [Gazouli, Maria] [Anagnou, Nicholas P.] [Strachan, David] [McArdle, Wendy L.] [Mathew, Christopher G.] [Rutgeerts, Paul] [Vermeire, Séverine] [Vatn, Morten H.] [Krawczak, Michael] [Rosenstiel, Philip] [Karlsen, Tom H.] [Schreiber, Stefan] | | 2010 | Journal Article | |
| Genome-wide association study identifies a psoriasis susceptibility locus at TRAF3IP2 In: Nature Genetics [42], 991-995 | [Ellinghaus, Eva] [Ellinghaus, David] [Stuart, Philip E.] [Nair, Rajan P.] [Debrus, Sophie] [Raelson, John V.] [Belouchi, Majid] [Fournier, Hélène] [Reinhard, Claudia] [Ding, Jun] [Li, Yun] [Tejasvi, Trilokraj] [Gudjonsson, Johann] [Stoll, Stefan W.] [Voorhees, John J.] [Lambert, Sylviane] [Weidinger, Stephan] [Eberlein, Bernadette] [Kunz, Manfred] [Rahman, Proton] [Gladman, Dafna D.] [Gieger, Christian] [Wichmann, H. Erich] [Karlsen, Tom H.] Mayr, Gabriele Albrecht, Mario [Kabelitz, Dieter] [Mrowietz, Ulrich] [Abecasis, Gonçalo R.] [Elder, James T.] [Schreiber, Stefan] [Weichenthal, Michael] [Franke, Andre] | 2010 | Journal Article | ||
| Genomic distribution and inter-sample variation of non-CpG methylation across human cell types In: PLoS Genetics [17], e1002389,1-e1002389,15 | [Ziller, Michael J.] Müller, Fabian [Liao, Jing] [Zhang, Yingying] [Gu, Hongcang] Bock, Christoph [Boyle, Patrick] [Epstein, Charles B.] [Bernstein, Bradley E.] Lengauer, Thomas [Gnirke, Andreas] [Meissner, Alexander] | | 2011 | Electronic Journal Article | |
| Genomic organization of the human tissue inhibitor of metalloproteinases-3 (TIMP3) In: Genome Research [5], 483-7 | [Stohr, H.] Roomp, Kirsten [Felbor, U.] [Weber, B. H.] | 1995 | Journal Article | ||
| Genotypic Analysis of HIV-1 Coreceptor Usage Universität des Saarlandes | Thielen, Alexander | | 2011 | Thesis - PhD thesis | |
| Genotypic Analysis of HIV Co-Receptor Usage In: Entry Inhibitoren - Neue Formen der HIV-Therapie, 31-39 | [Sierra, Saleta] [Kaiser, Rolf] Thielen, Alexander [Sander, Oliver] Lengauer, Thomas | [Jäger, Hans] | 2008 | Part of a Book | |
| Genotypic coreceptor analysis. In: European Journal of Medical Research [12], 453-462 | [Sierra, Saleta] [Kaiser, Rolf] Thielen, Alexander Lengauer, Thomas | | 2007 | Journal Article |
| Genotypic determination of HIV-1 tropism in the clinical setting In: HIV Therapy [4], 293-303 | [Swenson, Luke C.] [Boehme, Richard] Thielen, Alexander [McGovern, Rachel A.] [Harrigan, P. Richard] | 2010 | Journal Article | ||
| Genotypic tropism testing by massively parallel sequencing: qualitative and quantitative analysis In: BMC Medical Informatics and Decision Making [11], 30,1-30,8 | [Däumer, Martin] [Kaiser, Rolf] [Klein, Rolf] Lengauer, Thomas [Thiele, Bernhard] Thielen, Alexander | | 2011 | Electronic Journal Article | |
| Genotyping hepatitis B virus dual infections using population-based sequence data In: Journal of General Virology [9], 1899-1907 | Beggel, Bastian [Neumann-Fraune, Maria] [Doering, Matthias] Lawyer, Glenn [Kaiser, Rolf] [Verheyen, Jens] Lengauer, Thomas | 2012 | Journal Article | ||
| GOdot Sequence - function prediction from protein sequence Universität des Saarlandes | Gatzmann, Fanny | | 2010 | Thesis - Bachelor thesis | |
| GOTax: investigating biological processes and biochemical activities along the taxonomic tree In: Genome Biology [8], R33.1-10 | Schlicker, Andreas Rahnenführer, Jörg Albrecht, Mario Lengauer, Thomas Domingues, Francisco S. | 2007 | Electronic Journal Article | |
| Grey and white matter proportional relationships in the cerebellar vermis altered in schizophrenia In: Cerebellum [8], 52-60 | [Lawyer, Glenn] [Nesvåg, Ragnar] [Varnäs, Katarina] [Okugawa, Gaku] [Agartz, Ingrid] | | 2009 | Journal Article | |
| Hacia una comprension de la accion de la recombinacion genetica y la mutacion en el origen de la variacion fenotipica, mediante el analisis de la computacion evolutiva Universidad Nacional de Colombia | Ramírez, Fidel | 2004 | Thesis - Masters thesis | ||
| Hepatitis B virus reverse transcriptase sequence variant database for sequence analysis and mutation discovery In: Antiviral Research [88], 269-275 | [Rhee, Soo-Yon] [Margeridon-Thermet, Severin] [Nguyen, Mindie] [Liu, Tommy] [Kagan, Ron] Beggel, Bastian [Verheyen, Jens] [Kaiser, Rolf] [Shafer, Robert] | | 2010 | Journal Article |
| Heteroaryl-substituted naphthalenes and structurally modified derivatives: selective inhibitors of CYP11B2 for the treatment of congestive heart failure and myocardial fibrosis In: Journal of Medicinal Chemistry [48], 6632-6642 | [Voets, Marieke] Antes, Iris [Scherer, C] [Mueller-Vieira, U.] [Biemel, K.] [Barrassin, C.] [Marchais-Oberwinkler, S.] [Hartmann, R. W.] | 2005 | Journal Article | ||
| Hierarchical Bayes Model for Predicting Effectiveness of HIV Combination Therapies In: Statistical Applications in Genetics and Molecular Biology [11], 11.1-11.19 | Bogojeska, Jasmina Lengauer, Thomas | | 2012 | Journal Article | |
| High Concordance between the Position-Specific Scoring Matrix and Geno2pheno Algorithms for Genotypic Interpretation of HIV-1 Tropism: V3 Length as the Major Cause of Disagreement In: Journal of Clinical Microbiology [49], 3380-3382 | [Seclen, Eduardo] [Soriano, Vincente] [González, Maria M] [Gómez, Sagrario] Thielen, Alexander [Poveda, Eva] | 2011 | Journal Article | ||
| High frequency of complex mutational patterns in lamivudine resistant hepatitis B virus isolates In: Journal of Medical Virology [200], 39-49 | [Neumann-Fraune, Maria] Beggel, Bastian [Pfister, Herbert] [Kaiser, Rolf] [Verheyen, Jens] | | 2013 | Journal Article | |
| History-alignment models for bias-aware prediction of virological response to HIV combination therapy In: Proceedings of the Fifteenth International Conference on Artificial Intelligence and Statistics (AISTATS 2012), 118-126 | Bogojeska, Jasmina [Stöckel, Daniel] [Zazzi, Maurizio] [Kaiser, Rolf] [Incardona, Francesca] [Rosen-Zvi, Michal] Lengauer, Thomas | [Lawrence, Neil] [Girolami, Mark] | 2012 | Proceedings Article | |
| History Based HIV Therapy Outcome Prediction Universität des Saarlandes | Stöckel, Daniel | | 2010 | Thesis - Masters thesis | |
| History distribution matching method for predicting effectiveness of HIV combination therapies In: Neural Information Processing Systems (NIPS 2011), 424-432 | Bogojeska, Jasmina | [Shawe-Taylor, John] [Zemel, Richard S.] [Bartlett, Peter] [Pereira, Fernando] [Weinberger, Kilian Q.] | 2011 | Electronic Proceedings Article | |
| HIV-1 mutational pathways under multidrug therapy In: AIDS Research and Therapy [8], 1-13 | Lawyer, Glenn Altmann, André Thielen, Alex [Zazzi, Maurizio] [Sönnerborg, Anders] Lengauer, Thomas | | 2011 | Journal Article | |
| HIV-GRADE: A Publicly Available, Rules-Based Drug Resistance Interpretation Algorithm Integrating Bioinformatic Knowledge In: Intervirology [55], 102-107 | [Obermeier, Martin] Pironti, Alejandro [Berg, Thomas] [Braun, Patrick] [Däumer, Martin] [Eberle, Josef] [Ehret, Robert] [Kaiser, Rolf] [Kleinkauf, Niels] [Korn, Klaus] [Kücherer, Claudia] [Müller, Harm] [Noah, Christian] [Stürmer, Martin] Thielen, Alexander [Wolf, Eva] [Walter, Hauke] | 2012 | Journal Article | ||
| HIV prevalence and route of transmission in Turkish immigrants living in North-Rhine Westphalia, Germany In: Medical Microbiology and Immunology [200], 219-223 | [Schülter, Eugen] [Oette, Mark] [Balduin, Melanie] [Reuter, Stefan] [Rockstroh, Jürgen] [Fätkenheuer, Gerd] [Esser, Stefan] Lengauer, Thomas [Agacfidan, Ali] [Pfister, Herbert] [Kaiser, Rolf] [Akgul, Baki] | | 2011 | Journal Article | |
| HIV2EU: supporting standardized HIV-2 drug resistance interpretation in Europe In: Journal of the International AIDS Society, 135 | [Obermeier, Martin] [Camacho, Ricardo] [Charpentier, Charlotte] [Deschamps, Diane] [Eberle, Joseph] [Gürtler, Lutz] [Ruelle, Jean] Pironti, Alejandro [Brun-Veziet, Francoise] [Stürmer, Martin] [Kaiser, Rolf] | [Kippax, Susan] [Salif Sow, Papa] [Wainberg, Mark] [Heidari, Shirin] | 2012 | Poster | |
| HLA class I allele associations with HCV genetic variants in patients with chronic HCV genotypes 1a or 1b infection In: Journal of Hepatology [53], 1022-1028 | [Lange, Christian Markus] Roomp, Kirsten [Dragan, Anette] [Nattermann, Jacob] [Michalk, Monika] [Spengler, Ulrich] [Weich, Viola] Lengauer, Thomas [Zeuzem, Stefan] [Berg, Thoma] [Sarrazin, Christoph] | | 2010 | Journal Article | |
| How Little Do We Actually Know? - On the Size of Gene Regulatory Networks. In: IEEE/ACM transactions on computational biology and bioinformatics [9], 1293-1300 | Röttger, Richard [Rueckert, Ulrich] [Taubert, Jan] Baumbach, Jan | 2012 | Journal Article | ||
| Hybrid clustering for microarray analysis combining intensity and shape features In: Poster book of the European Conference on Computational Biology, Saarbrücken, Germany 2002, - | Rahnenführer, Jörg | | 2002 | Poster | |
| Hybrid clustering for microarray image analysis combining intensity and shape features In: BMC Bioinformatics [5], 1-11 | Rahnenführer, Jörg [Bozinov, Daniel] | 2004 | Journal Article | ||
| Hyperdiploidy defines a distinct cytogenetic entity of meningiomas In: Journal of Neuro-Oncology [83], 213-221 | [Ketter, Ralf] [Kim, Yoo-Jin] [Storck, Simone] Rahnenführer, Jörg [Romeike, Bernd F.M.] [Steudel, Wolf-Ingo] [Zang, Klaus D.] [Henn, Wolfram] | | 2007 | Journal Article |
| Identification and in silico characterization of a novel compound heterozygosty associated with hereditary aceruloplasminemia In: Scandinavian Journal of Gastroenterology [42], 1088-1094 | [Hofmann, Wolf Peter] Welsch, Christoph [Takahashi, Yoshitomo] [Miyajima, Hiroaki] [Mihm, Ulrike] [Krick, Christoph] [Zeuzem, Stefan] [Sarrazin, Christoph] | 2007 | Journal Article | ||
| Identification of c-Kit receptor as a regulator of adult neural stem cells in the mammalian eye: interactions with Notch signaling In: Developmental Biology [273], 87-105 | [James, Jackson] [Das, Ani V.] [Zhao, Xing] Rahnenführer, Jörg [Ahmad, Iqbal] | | 2004 | Journal Article | |
| Identification of CYP106A2 as a Regioselective Allylic Bacterial Diterpene Hydroxylase In: ChemBioChem [12], 576-582 | [Bleif, Sabrina] [Hannemann, Frank] [Lisurek, Michael] [von Kries, Jens Peter] [Zapp, Josef] Dietzen, Matthias [Antes, Iris] [Bernhardt, Rita] | 2011 | Journal Article | ||
| Identification of functionally important regions in cytochrome P450 systems and a systematic analysis of various CYP P450 homology models Universität des Saarlandes | Meiser, Ina | | 2005 | Thesis - Bachelor thesis | |
| Identification of mammalian orthologs associates PYPAF5 with distinct functional roles In: FEBS Letters [538], 173-177 | Albrecht, Mario Domingues, Francisco S. [Schreiber, Stefan] Lengauer, Thomas | 2003 | Journal Article | ||
| Identification of PatL1, a human homolog to yeast P body component Pat1 In: Biochimica et Biophysica Acta - Molecular Cell Research [1773], 1786-1792 | [Scheller, Nicoletta] [Resa-Infante, Patricia] [de la Luna, Susana] [Galao, Rui Pedro] Albrecht, Mario [Kaestner, Lars] [Lipp, Peter] Lengauer, Thomas [Meyerhans, Andreas] [Díez, Juana] | | 2007 | Journal Article | |
| Identification of rat brahma (rBRM), a subunit of SWI/SNF chromatin remodeling complex: Involvement in the differentiation of retinal stem cells/progenitors | [James, Jackson] Das, Ani V. Rahnenführer, Jörg [Leon, FAS] [Ahmad, Iqbal] | 2003 | Miscellaneous | ||
| Identification of Symmetries in Molecules and Complexes Universität des Saarlandes | Korbel, Ulli S. | | 2007 | Thesis - Masters thesis | |
| Identifying discriminative motifs for molecular function of proteins Universität des Saarlandes | Loi, Luu Phuc | 2010 | Thesis - Masters thesis | ||
| Image analysis for cDNA microarrays In: Methods of Information in Medicine [44], 405-407 | Rahnenführer, Jörg | | 2005 | Journal Article | |
| Impact of a single amino acid in the variable region 2 of the Old World monkey TRIM5alpha SPRY (B30.2) domain on anti-human immunodeficiency virus type 2 activity In: Virology [388], 160-168 | [Kono, Ken] Bozek, Kasia Domingues, Francisco S. [Shioda, Tatsuo] [Nakayama, Emi E.] | 2009 | Journal Article | ||
| Impact of ribavirin on HCV replicon RNA decline during treatment with interferon-α and the protease inhibitors boceprevir or telaprevir In: Antiviral Therapy [16], 695-704 | [Hofmann, Wolf Peter] [Chung, Tje Lin] [Osbahr, Carola] [Susser, Simone] [Karey, Ursel] [Mihm, Ulrike] Welsch, Christoph [Lötsch, Jörn] [Sarrazin, Christoph] [Zeuzem, Stefan] [Herrmann, Eva] | | 2011 | Journal Article | |
| Implementation of a Generic Fragment Based Method for Automated Calculation of the Octanol-Water Partition Coefficient Universität des Saarlandes | Binsl, Thomas | 2004 | Thesis - Bachelor thesis | |
| Implementation of a method to filter out compounds with toxic, reactive and unsuitable functional groups Universität des Saarlandes | Volkamer, Andrea | | 2005 | Thesis - Bachelor thesis |
| Improved cyclodextrin-based receptors for camptothecin by inverse virtual screening In: Chemistry [13], 6801-6809 | Steffen, Andreas [Thiele, Carolin] [Tietze, Simon] [Strassnig, Christian] Kämper, Andreas Lengauer, Thomas [Wenz, Gerhard] [Apostolakis, Joannis] | 2007 | Journal Article | ||
| Improved detection of CXCR4-using HIV by V3 genotyping: application of population-based and "deep" sequencing to plasma RNA and proviral DNA In: Journal of Acquired Immune Deficiency Syndromes [54], 506-510 | [Swenson, Luke C.] [Moores, Andrew] [Low, Andrew J.] Thielen, Alexander [Dong, Winnie] [Woods, Conan] [Jensen, Mark A.] [Wynhoven, Brian] [Chan, Dennison] [Glascock, Christopher] [Harrigan, P. Richard] | | 2010 | Journal Article | |
| Improved detection of X4 virus by V3 genotyping: application to plasma RNA and proviral DNA In: Antiviral Therapy, A99 | [Moores, Andrew] Thielen, Alexander [Dong, Winnie] Low, Andrew J. [Woods, Conan] [Jensen, Mark] [Wynhoven, Brian] [Chan, Dennison] [Glascock, Christopher] [Harrigan, P Richard] | 2008 | Poster | ||
| Improved genotypic prediction of HIV-1 coreceptor usage by incorporating V2 loop sequence variation In: Antiviral Therapy, A100 | Thielen, Alexander [Harrigan, P Richard] Low, Andrew J. [Moores, A] Altmann, Andre Bozek, Kasia [Heger, Eva] [Sichtig, Nadine] [Kaiser, Rolf] Lengauer, Thomas | | 2008 | Poster | |
| Improved prediction of HIV-1 coreceptor usage with sequence information from the second hypervariable loop of gp120 In: Journal of Infectious Diseases [202], 1435-1443 | Thielen, Alexander [Sichtig, Nadine] [Kaiser, Rolf] [Lam, Jeffrey] [Harrigan, P. Richard] Lengauer, Thomas | 2010 | Journal Article | ||
| Improved prediction of response to antiretroviral combination therapy using the genetic barrier to drug resistance In: Antiviral Therapy [12], 169-178 | Altmann, Andre [Beerenwinkel, Niko] Sing, Tobias Savenkov, Igor [Däumer, Martin] [Kaiser, Rolf] [Rhee, Soo-Yon] [Fessel, W Jeffrey] [Shafer, Robert W] Lengauer, Thomas | | 2007 | Journal Article | |
| Improved Scoring of Functional Groups from Gene Expression Data by Decorrelating GO Graph Structure In: Bioinformatics [22], 1600-1607 | Alexa, Adrian Rahnenführer, Jörg Lengauer, Thomas | 2006 | Journal Article | |
| Improvement of the fungal enzyme pyranose 2-oxidase using protein engineering In: Journal of Biotechnology [124], 26-40 | [Heckmann-Pohl, Dorothee M.] [Bastian, Sabine] [Altmeier, S.] Antes, Iris | | 2006 | Journal Article | |
| Improving disease gene prioritization using the semantic similarity of Gene Ontology terms In: Bioinformatics [26], i561-i567 | Schlicker, Andreas Lengauer, Thomas Albrecht, Mario | 2010 | Journal Article | ||
| Improving fold recognition of protein threading by experimental distance constraints In: In Silico Biology [2], 325-337 | Albrecht, Mario [Hanisch, Daniel] [Zimmer, Ralf] Lengauer, Thomas | | 2002 | Journal Article |
| Improving Fold Recognition Using Protein and Domain Interactions Universität des Saarlandes | Guo, Xin | 2006 | Thesis - Masters thesis | ||
| Improving HIV-1 coreceptor usage prediction from genotype with regions outside of V3 In: Reviews in Antiviral Therapy, 81-82 | Thielen, Alexander [Kaiser, Rolf] Lengauer, Thomas | | 2008 | Poster | |
| Improving HIV coreceptor usage prediction in the clinic using hints from next-generation sequencing data In: Bioinformatics [28], i589-i595 | Pfeifer, Nico Lengauer, Thomas | 2012 | Journal Article | |
| Improving the quality of protein structure models by selecting from alignment alternatives In: BMC Bioinformatics [7], 1-11 | Sommer, Ingolf [Toppo, Stefano] Sander, Oliver Lengauer, Thomas [Tosatto, Silvio C. E.] | | 2006 | Electronic Journal Article | |
| In-depth analysis of G-to-A hypermutation rate in HIV-1 env DNA induced by endogenous APOBEC3 proteins using massively parallel sequencing In: Journal of Virological Methods [71], 329-338 | [Knoepfel, Stefanie] [Di Giallonardoc, Francesca] [Däumer, Martin] Thielen, Alexander [Metzner, Karin J] | 2011 | Journal Article | ||
| In silico analysis of microRNA genes on human chromosome 14 and mouse chromosome 12 Universität des Saarlandes | Kircher, Martin | | 2007 | Thesis - Masters thesis | |
| In Silico Models for the Prediction of Metabolism by Cytochrome P450 Enzymes Universität des Saarlandes | Mangels, Miriam | 2009 | Thesis - Bachelor thesis | ||
| Inference of Protein Function based on Functionally Conserved Regions in Sequence and Structure Space Universität des Saarlandes | Weinhold, Nils | | 2006 | Thesis - Masters thesis | |
| Inferring physical protein contacts from large-scale purification data of protein complexes In: Molecular & Cellular Proteomics [10], M110.004929,1-M110.004929,15 | Schelhorn, Sven-Eric Mestre, Julián Zotenko, Elena Albrecht, Mario | 2011 | Electronic Journal Article | ||
| Inferring Protein Function from Protein Structure In: Bioinformatics - From Genomes to Therapies 3. The Holy Grail: Molecular Function, 1211-1252 | Domingues, Francisco S. Lengauer, Thomas | Lengauer, Thomas | 2007 | Part of a Book | |
| Inferring viral tropism from genotype with massively parallel sequencing; qualitative and quantitative analysis In: Antiviral Therapy, A101 | Däumer, Martin [Kaiser, Rolf] [Klein, Rolf] Lengauer, Thomas [Thiele, Bernhard] Thielen, Alexander | 2008 | Poster | ||
| Inferring virological response from genotype: with or without predicted phenotypes? In: Proceedings of the 16th International HIV Drug Resistance Workshop, S169 | Altmann, Andre Sing, Tobias [Vermeiren, Hans] [Winters, Bart] [Van Craenenbroeck, Elke] [Van der Borght, Koen] [Rhee, Soo-Yon] [Shafer, Robert W] [Schülter, Eugen] [Kaiser, Rolf] [Peres, Yardena] [Sonnerborg, Anders] [Fessel, W Jeffrey] [Incardona, Francesca] [Zazzi, Maurizio] [Bacheler, Lee] [Van Vlijmen, Hermann] Lengauer, Thomas | | 2007 | Poster | |
| Inferring virological response to antiretroviral combination therapy based on past treatment lines Universität des Saarlandes | Müller, Fabian | 2008 | Thesis - Bachelor thesis | ||
| Informatics (Computational Biology) In: Growth Factors and Oncogenes in Gastrointestinal Cancers to Informatics (Computational Biology), 567-626 | Lengauer, Thomas | [Meyers, Robert A.] | 2005 | Part of a Book |
| Integrated statistical learning of metabolic ion mobility spectrometry profiles for pulmonary disease identification In: Genetics and Molecular Research [11], 2733-2744 | Hauschild, Anne-Christin [Baumbach, Jörg Ingo] Baumbach, Jan | 2012 | Electronic Journal Article | |
| Integrating biological data - the Distributed Annotation System In: BMC Bioinformatics [9], S3.1-7 | [Jenkinson, Andrew M.] Albrecht, Mario [Birney, Ewan] Blankenburg, Hagen [Down, Thomas] [Finn, Robert D.] [Hermjakob, Henning] [Hubbard, Tim J. P.] [Jimenez, Rafael C.] [Jones, Philip] [Kähäri, Andreas] [Kulesha, Eugene] [Macías, José R.] [Reeves, Gabrielle A.] [Prlić, Andreas] | | 2008 | Journal Article | |
| Integrating expression data with domain interaction networks In: Bioinformatics [24], 2546-2548 | Emig, Dorothea [Cline, Melissa S.] Lengauer, Thomas Albrecht, Mario | 2008 | Journal Article | ||
| Integrating the GO graph structure in scoring the significance of Gene Ontology terms Universität des Saarlandes | Alexa, Adrian | | 2005 | Thesis - Masters thesis | |
| Integrative computational biology In: Integrative Biology [4], 713-714 | Baumbach, Jan | 2012 | Journal Article | ||
| Integrative visual analysis of the effects of alternative splicing on protein domain interaction networks In: Journal of Integrative Bioinformatics [5], 101-115 | Emig, Dorothea [Cline, Melissa S.] [Klein, Karsten] [Kunert, Anne] [Mutzel, Petra] Lengauer, Thomas Albrecht, Mario | | 2008 | Journal Article | |
| Intensive blood glucose control is safe and effective in diabetic cats using home monitoring and treatment with glargine In: Journal of feline medicine and surgery [11], 668-682 | Roomp, Kirsten [Rand, Jacquie] | 2009 | Journal Article | ||
| Inter-individual variation of DNA methylation and its implications for large-scale epigenome mapping In: Nucleic Acids Research [36], e55 | Bock, Christoph [Walter, Jörn] [Paulsen, Martina] Lengauer, Thomas | | 2008 | Journal Article |
| Intragenic allele pyramiding combines different specificities of wheat Pm3 resistance alleles In: The Plant Journal [64], 433-445 | [Brunner, Susanne] [Hurni, Severine] [Streckeisen, Philipp] Mayr, Gabriele Albrecht, Mario [Yahiaoui, Nabila] [Keller, Beat] | 2010 | Journal Article | ||
| Introduction In: Bioinformatics - From Genomes to Therapies 1. The Building Blocks: Molecular Sequences and Structures, 1-24 | Lengauer, Thomas | Lengauer, Thomas | 2007 | Part of a Book | |
| Investigation of expert rule bases, logistic regression, and non-linear machine learning techniques for predicting response to antiretroviral treatment In: Antiviral Therapy [14], 433-442 | [Prosperi, Mattia C. F.] Altmann, André [Rosen-Zvi, Michal] [Aharoni, Ehud] [Gabor, Borgulya] [Fulop, Bazso] [Sonnerborg, Anders] [Schulter, Eugen] [Struck, Daniel] [Ulivi, Giovanni] [Vandamme, Anne-Mieke] [Vercauteren, Jurgen] [Zazzi, Maurizio] | 2009 | Journal Article | ||
| Involvement of novel HIV-1 reverse transcriptase mutations in the regulation of resistance to nucleoside inhibitors In: Journal of Virology [80], 7186-7198 | [Svicher, Valentina] Sing, Tobias [Santoro, Maria Mercedes] [Forbici, Federica] [Rodriguez- Barrios, Fátima] [Bertoli, Ada] [Beerenwinkel, Niko] [Bellocchi, Maria Concetta] [Gago, Federigo] [d´Arminio Monforte, Antonella] [Antinori, Andrea] Lengauer, Thomas Ceccherini-Silberstein, Francesca [Perno, Carlo-Federico] | | 2006 | Journal Article | |
| IRECS: A new algorithm for the selection of most probable ensembles of side-chain conformations in protein models. In: Protein Science [16], 1294-1307 | Hartmann, Christoph Antes, Iris Lengauer, Thomas | 2007 | Journal Article | |
| Iterative Subgraph Mining for Principal Component Analysis. In: Proceedings of the IEEE International Conference on Data Mining (ICDM2008), DM934 | Saigo, Hiroto [Tsuda, Koji] | [Giannotti, Fosca] [Gunopulos, Dimitrios] | 2008 | Proceedings Article | |
| IVF: stars may have to consider the risk of stolen parenthood In: Nature [454], 938 | Bock, Christoph | 2008 | Journal Article | ||
| Ketoamide Resistance and Hepatitis C Virus Fitness in Val55 Variants of the NS3 Serine Protease In: Antimicrobial Agents and Chemotherapy [56], 1907-1915 | Welsch, Christoph [Schweizer, Sabine] [Shimakami, Testsuro] [Domingues, Francisco S.] [Kim, Seungtaek] [Lemon, Stanley, M.] [Antes, Iris] | | 2012 | Journal Article | |
| KeyPathwayMiner - Detecting case-specific biological pathways by using expression data In: Internet Mathematics [7], 299-313 | Alcaraz, Nicolas Kucuk, Hande [Weile, Jochen] [Wipat, Anil] Baumbach, Jan | 2012 | Journal Article | ||
| Lactam hydrolysis catalyzed by mononuclear metallo-beta-lactamases: a density functional study In: Journal of Physical Chemistry / B [107], 2366-2375 | [Olsen, Lars] [Antony, Jens] [Ryde, Ulf] Adolph, Hans-Werner [Hemmingsen, Lars] | | 2003 | Journal Article | |
| Lead Identification by Virtual Screening In: Bioinformatics - From Genomes to Therapies 2. Getting at the Inner Workings: Molecular Interactions, 651-704 | Kämper, Andreas [Rognan, Didier] Lengauer, Thomas | Lengauer, Thomas | 2007 | Part of a Book | |
| Learning from past treatments and their outcome improves prediction of In Vivo response to anti-HIV therapy In: Statistical Applications in Genetics and Molecular Biology [10], 1-32 | Saigo, Hiroto Altmann, André Bogojeska, Jasmina Müller, Fabian [Nowozin, Sebastian] Lengauer, Thomas | | 2011 | Electronic Journal Article |
| Learning localized rule mixtures by maximizing the area under the ROC curve, with an application to the prediction of HIV-1 coreceptor usage Universität Freiburg | Sing, Tobias | 2004 | Thesis - Masters thesis | ||
| Learning mixtures of localized rules by maximizing the area under the ROC curve In: ROCAI-2004: 1st International Workshop on ROC Analysis in Artificial Intelligence, 89-96 | Sing, Tobias Beerenwinkel, Niko Lengauer, Thomas | [Hernández-Orallo, José] [Ferri, César] [Lachiche, Nicolas] [Falch, Peter A.] | 2004 | Proceedings Article | |
| Learning multiple evolutionary pathways from cross-sectional data In: Journal of Computational Biology [12], 584-598 | Beerenwinkel, Niko Rahnenführer, Jörg [Däumer, Martin] [Hoffmann, Daniel] [Kaiser, Rolf] [Selbig, Joachim] Lengauer, Thomas | 2005 | Journal Article | ||
| Learning multiple evolutionary pathways from cross-sectional data In: RECOMB 2004 : proceedings of the Eighth Annual International Conference on Research in Computational Molecular Biology, 36-44 | Beerenwinkel, Niko Rahnenführer, Jörg Däumer, Martin Hoffmann, Daniel Kaiser, Rolf Selbig, Joachim Lengauer, Thomas | [Gusfield, Dan] [Bourne, Philip] [Istrail, Sorin] [Pevzner, Pavel] [Waterman, Michael] | 2004 | Proceedings Article | |
| Local and covariate-modulated false discovery rates applied in neuroimaging In: NeuroImage [47], 213-219 | [Lawyer, Glenn] [Ferkingstad, Egil] [Nesvåg, Rangan] [Varnäs, Katarina] [Agartz, Ingrid] | 2009 | Journal Article | ||
| Local function conservation in sequence and structure space In: PLoS Computational Biology [4], e1000105 | Weinhold, Nils Sander, Oliver Domingues, Francisco S. Lengauer, Thomas Sommer, Ingolf | | 2008 | Journal Article |
| Local protein structure prediction using discriminative models In: BMC Bioinformatics [7], 1-13 | Sander, Oliver Sommer, Ingolf Lengauer, Thomas | 2006 | Electronic Journal Article | ||
| Local sequence-structure relationships in proteins Friedrich-Alexander-Universität Erlangen-Nürnberg | Sander, Oliver | | 2004 | Thesis - other | |
| Low k-shells identify bridge elements critical to disease flow in small-world networks In: Numerical Analysis and Applied Mathematics (ICNAAM 2012), 1426-1429 | Reppas, Andreas Lawyer, Glenn | [Simos, Theodore] [Psihoyios, George] [Tsitouras, Charalampos] [Anastassi, Zacharias] | 2012 | Proceedings Article |
| LRRK2 mutations and parkinsonism In: The Lancet [365], 1230 | Albrecht, Mario | | 2005 | Journal Article | |
| Lung stem cell self-renewal relies on BMI1-dependent control of expression at imprinted loci In: Cell Stem Cell [9], 272-280 | [Zacharek, Sima J.] [Fillmore, Christine M.] [Lau, Allison N.] [Gludish, David W.] [Chou, alan] [Ho, Joshua W. K.] [Zamponi, Raffaella] [Gazit, Roi] Bock, Christoph [Jäger, Natalie] [Smith, Zachary D.] [Kim, Tae-min] [Saunders, Arven H.] [Wong, Janice] [Lee, Joo-Hyeon] [Roach, Rebecca R.] [Rossi, Derrick J.] [Meissner, Alex] [Gimelbrant, Alexander A.] [Park, Peter J.] [Kim, Carla F.] | 2011 | Journal Article | ||
| Managing drug resistance in cancer: lessons from HIV therapy In: Nature Reviews Cancer [12], 494-501 | Bock, Christoph Lengauer, Thomas | | 2012 | Journal Article | |
| MAP Kinase Docking Motifs in HIV Proteins Universität des Saarlandes | Bastys, Tomas | 2012 | Thesis - Masters thesis | |
| Maximal Common Subgraph DAGs: Theory and Application to Virtual Screening in Drug Development Universität des Saarlandes | Kunert, Lars | | 2011 | Thesis - PhD thesis | |
| Measuring and analyzing tissue specificity of human genes and protein complexes In: EURASIP Journal on Bioinformatics and Systems Biology [2011], 5,1-5,6 | Emig, Dorothea Kacprowski, Tim Albrecht, Mario | 2011 | Journal Article | ||
| Measuring and analyzing tissue specificity of human genes and protein complexes In: Seventh International Workshop on Computational Systems Biology, WCSB 2010, 27-30 | Emig, Dorothea Kacprowski, Tim Albrecht, Mario | [Nykter, Matti] [Ruusuvuori, Pekka] [Carlberg, Carsten] [Yli-Harja, Olli] | 2010 | Proceedings Article | |
| Metabolic high- content screening of Saccharomyces cerevisiae reveals superior performance of single gene deletion strains In: Process Biochemistry [41], 2170-2179 | [Velagapudi, Vidya R.] [Wittmann, Christoph] Lengauer, Thomas Talwar, Priti [Heinzle, Elmar] | 2006 | Journal Article | ||
| MethMarker – A toolkit for design, optimization and validation of DNA methylation biomarkers for cancer diagnosis and therapy optimization Universität des Saarlandes | Schüffler, Peter | | 2008 | Thesis - Masters thesis | |
| MethMarker: User-friendly design and optimization of gene-specific DNA methylation assays In: Genome Biology [10], R105:1-R105:10 | Schüffler, Peter [Mikeska, Thomas] [Waha, Andreas] Lengauer, Thomas Bock, Christoph | 2009 | Journal Article | |
| Methoden zur Interpretation genotypischer Resistenztests In: Resistenz in der HIV-Therapie : Diagnostik und Management, 66-68 | Beerenwinkel, Niko | [Oette, Mark] [Kaiser, Rolf] [Häussinger, Dieter] | 2004 | Part of a Book | |
| Methods for optimizing antiviral combination therapies In: Bioinformatics [19], i16-i25 | Beerenwinkel, Niko Lengauer, Thomas [Däumer, Martin] [Kaiser, Rolf] [Walter, Hauke] [Korn, Klaus] [Hoffmann, Daniel] [Selbig, Joachim] | 2003 | Journal Article | ||
| Microarrays: How many do you need? In: Journal of Computational Biology [10], 653-667 | [Zien, Alexander] [Fluck, Juliane] [Zimmer, Ralf] Lengauer, Thomas | | 2003 | Journal Article | |
| Microarrays: How Many Do You Need? In: Proceedings of the Sixth Annual Conference on Research in Computational Molecular Biology (RECOMB2002), 321-330 | [Zien, Alexander] [Fluck, Juliane] [Zimmer, Ralf] Lengauer, Thomas | [Myers, Gene] [Hannenhalli, Sridhar] [Istrail, Sorin] [Pevzner, Pavel] [Waterman, Michael] | 2002 | Proceedings Article | |
| MicroRNA Transcription Start Site Prediction with Multi-objective Feature Selection In: Statistical Applications in Genetics and Molecular Biology [11], 6.1-6.25 | [Bhattacharyya, Malay] Feuerbach, Lars [Bhadra, Tapas] [Bandyopadhyay, Sanghamitra] | | 2012 | Journal Article | |
| Mining GO annotations for improving annotation consistency In: PLoS ONE [7], e40519,1-e40519,7 | [Faria, Daniel] Schlicker, Andreas [Pesquita, Catia] [Bastos, Hugo] [Ferreira, António E N] Albrecht, Mario [Falcão, André O] | 2012 | Electronic Journal Article | ||
| Model-Based Anti HIV Therapy Universität des Saarlandes | Sing, Tobias | | 2008 | Thesis - PhD thesis | |
| Model Selection for Mixtures of Mutagenetic Trees In: Statistical Applications in Genetics and Molecular Biology [5], Article 17 | [Yin, Junming] [Beerenwinkel, Niko] Rahnenführer, Jörg Lengauer, Thomas | 2006 | Journal Article | |
| Model Selection for Mixtures of Mutagenetic Trees Universität des Saarlandes | Yin, Junming | | 2005 | Thesis - Masters thesis | |
| Modeling HIV Neutralization Universität des Saarlandes | Hauschild, Anne-Christin | 2011 | Thesis - Masters thesis | ||
| Modeling influenza evolution in response to immune system pressure Universität des Saarlandes | Eldarov, Nasimi | | 2012 | Thesis - Masters thesis | |
| Modeling of Flexible Side Chains for Protein-Ligand Docking Universität des Saarlandes | Hartmann, Christoph | 2008 | Thesis - PhD thesis | ||
| Modelling amorphous Si3B3N7: Structure and elastic properties In: Physical Review [B 70], 144201-144201 | [Hannemann, A.] [Schön, J.C.] [Jansen, M.] [Putz, H.] Lengauer, Thomas | | 2004 | Journal Article | |
| Molecular basis of telaprevir resistance due to V36 and T54 mutations in the NS3-4A protease of HCV In: Genome Biology [9], R16 | [Welsch, Christoph] Domingues, Francisco S. [Susser, Simone] Antes, Iris Hartmann, Christoph Mayr, Gabriele Schlicker, Andreas [Sarrazin, Christoph] Albrecht, Mario [Zeuzem, Stefan] Lengauer, Thomas | 2008 | Journal Article | |
| Molecular Dynamics and Free Energy Studies on the Wild-Type and Mutated HIV-1 Protease Complexed with Four Approved Drugs: Mechanism of Binding and In: Journal of Chemical Information and Modeling [49], 1751-1761 | [Alcaro, Stefano] [Artese, Anna] [Ceccherini-Silberstein, Francesca] [Ortuso, Francesca] [Perno, Carlo Federico] Sing, Tobias [Svicher, Valentina] | | 2009 | Journal Article | |
| Molecular Dynamics based prediction of HIV-1 drug resistance Universität des Saarlandes | Djoumbou, Yannick | 2008 | Thesis - Masters thesis | ||
| Molecular dynamics simulations of photoactive yellow protein (PYP) in three states of its photocycle: a comparison with X-ray and NMR data and analysis of the effects of Glu46 deprotonation and mutation In: European Biophysics Jounal [31], 504-520 | Antes, Iris [Thiel, Walter] [Gunsteren van, Wilfred F.] | | 2002 | Journal Article | |
| Moment invariants as shape recognition technique for comparing protein binding sites In: Bioinformatics [23], 3139-3146 | Sommer, Ingolf Müller, Oliver Domingues, Francisco S. Sander, Oliver [Weickert, Joachim] Lengauer, Thomas | 2007 | Journal Article | ||
| Motif Search in Protein Sequences for Protein Structure Prediction Universität des Saarlandes | Krier, Markus | | 2005 | Thesis - Bachelor thesis |
| Mtreemix: a software package for learning and using mixture models of mutagenetic trees In: Bioinformatics [21], 2106-2107 | Beerenwinkel, Niko Rahnenführer, Jörg [Kaiser, Rolf] [Hoffmann, Daniel] [Selbig, Joachim] Lengauer, Thomas | 2005 | Journal Article | ||
| Multi-scale computational modeling of developmental biology In: Bioinformatics [28], 2022-2028 | Setty, Yaki | | 2012 | Journal Article | |
| Multi-Task Learning for HIV Therapy Screening In: Proceedings, Twenty-Fifth International Conference on Machine Learning, 56-63 | Bickel, Steffen Bogojeska, Jasmina Lengauer, Thomas Sheffer, Tobias | [McCallum, Andrew] [Roweis, Sam] | 2008 | Proceedings Article |
| Multiple-Ligand-Based Virtual Screening: Methods and Applications of the MTree Approach In: Journal of Medicinal Chemistry [48], 6575-6584 | [Hessler, G.] [Zimmermann, M.] [Matter, H.] [Evers, A.] [Naumann, T.] Lengauer, Thomas [Rarey, M.] | | 2005 | Journal Article | |
| Multivariate permutation tests for the k-sample problem with clustered data In: Computational Statistics [17], 165-184 | Rahnenführer, Jörg | 2002 | Journal Article | ||
| Mutagenetic tree Fisher kernel improves prediction of HIV drug resistance from viral genotype In: Advances in Neural Information Processing Systems 19, 1-9 | Sing, Tobias [Beerenwinkel, Niko] | [Schölkopf, B] [Platt, J.] [Hoffman, T.] | 2007 | Proceedings Article |
| Mutations in ABC1 in Tangier disease and familial high-density lipoprotein In: Nature Genetics [22], 336-45 | [Brooks-Wilson, A] [Marcil, Michel] [Clee, Susanne M.] [Zhang, Lin-Hua] Roomp, Kirsten [van Dam, M] [Yu, L] [Brewer, C] [Collins, Jennifer A.] [Molhuizen, H.O.] [Loubser, O] [Ouelette, B.F.] [Fichter, K] [Ashbourne-Excoffon, K.J.] [Sensen, C.W.] [Scherer, S] [Mott, S] [Denis, M] [Martindale, D] [Frohlich, J] [Morgan, K] [Koop, B] [Pimstone, S] [Kastelein, J.J.P.] [Hayden, Michael R.] | 1999 | Journal Article | ||
| Mutations in gp41 are correlated with coreceptor tropism but do not improve prediction methods substantially In: Antiviral Therapy [16], 319-328 | Thielen, Alexander Lengauer, Thomas [Swenson, Luke C] [Dong, Winnie W.Y.] [McGovern, Rachel A] [Lewis, Marilyn] [James, Ian] [Heera, Jayvant] [Valdez, Hernan] [Harrigan, P Richard] | | 2011 | Journal Article | |
| Mutations in the ABC1 gene in familial HDL deficiency with defective cholesterol efflux In: The Lancet [354], 1341-6 | [Marcil, Michel] [Brooks-Wilson, A.] [Clee, Susanne M.] Roomp, Kirsten [Zhang, Lin-Hua] [Yu, L.] [Collins, Jennifer A.] [van Dam, M.] [Molhuizen, H. O.] [Loubser, O.] [Ouelette, B. F.] [Sensen, C. W.] [Fichter, K.] [Mott, S.] [Denis, M.] [Boucher, B.] [Pimstone, S.] [Genest, Jacques] [Kastelein, J. J. P.] [Hayden, Michael R.] | 1999 | Journal Article | ||
| Mutations in the MutSalpha interaction interface of MLH1 can abolish DNA mismatch repair In: Nucleic Acids Research [34], 6574-6586 | [Plotz, Guido] [Welsch, Christoph] [Giron-Monzon, Luis] [Friedhoff, Peter] Albrecht, Mario [Piiper, Albrecht] Biondi, Ricardo M. Lengauer, Thomas [Zeuzem, Stefan] [Raedle, Jochen] | | 2006 | Journal Article |
| Mutations in the NB-ARC domain of I-2 that impair ATP hydrolysis cause autoactivation In: Plant Physiology [140], 1233-1245 | [Tameling, Wladimir I.] [Vossen, Jack H.] Albrecht, Mario Lengauer, Thomas [Berden, Jan A.] [Haring, Michel A.] [Cornelissen, Ben J.C.] Takken, Frank L. W. | 2006 | Journal Article | ||
| Mutations within GP41 are correlated with coreceptor tropism but do not substantially improve coreceptor usage prediction In: Reviews in Antiviral Therapy & Infectious Diseases, 47-47 | Thielen, Alexander Lengauer, Thomas [Harrigan, P Richard] [Swenson, Luke] [Dong, Winnie WY] [McGovern, Rachel A] [Lewis, Marilyn] [James, Ian] [Heera, Jayvant] [Valdez, Hernan] | | 2010 | Poster | |
| Network analysis of viral host factors Universität des Saarlandes | Speicher, Nora K. | 2010 | Thesis - Bachelor thesis | ||
| Neue Wege zur Optimierung von Anti-HIV Therapien In: BIOforum [24], 912-914 | Beerenwinkel, Niko [Däumer, Martin] [Hoffmann, Daniel] [Kaiser, Rolf] [Korn, Klaus] Lengauer, Thomas [Schmidt, Barbara] [Walter, Hauke] [Selbig, Joachim] | | 2001 | Journal Article | |
| New inhibitors of human cathepsin G identified by surface display library screening and peptide-protein docking In: 7th International Symposium on Pharmaceutical Sciences (ISOPS-7), 46-49 | [Jose, Joachim] [Betschieder, Dirk] Ray, Somak Lengauer, Thomas [Zangen, D] | 2003 | Proceedings Article | ||
| Novel Aldosterone Synthase Inhibitors with Extended Carbocyclic Skeleton by a Combined Ligand-Based and Structure-Based Drug Design Approach In: Journal of Medical Chemistry [51], 6138-6149 | [Lucas, Simon] [Heim, Ralph] [Negri, Matthias] Antes, Iris [Ries, Christina] [Schewe, Katarzyna E.] [Bisi, Alessandra] [Gobbi, Silvia] [Hartmann, Rolf W.] | | 2008 | Journal Article | |
| Novel analysis approaches to context-dependent molecular networks Universität des Saarlandes | Emig, Dorothea | 2011 | Thesis - PhD thesis | ||
| Novel Approaches to the Integration and Analysis of Systems Biology Universität des Saarlandes | Ramirez, Fidel | | 2012 | Thesis - PhD thesis | |
| Novel search method for the discovery of functional relationships In: Bioinformatics [28], 269-276 | Ramírez, Fidel Lawyer, Glenn Albrecht, Mario | 2012 | Journal Article | ||
| Novel Sm-like proteins with long C-terminal tails and associated methyltransferases In: FEBS Letters [569], 18-26 | Albrecht, Mario Lengauer, Thomas | | 2004 | Journal Article | |
| Novel technologies for virtual screening In: Drug Discovery Today [9], 27-34 | Lengauer, Thomas [Lemmen, Christian] [Rarey, Matthias] [Zimmermann, M.] | 2004 | Journal Article | ||
| NOXclass: prediction of protein-protein interaction types In: BMC Bioinformatics [7], 1-15 | Zhu, Hongbo Domingues, Francisco S. Sommer, Ingolf Lengauer, Thomas | | 2006 | Electronic Journal Article | |
| On open problems in biological network visualization In: Graph Drawing : 17th International Symposium, GD 2009, 256-267 | Albrecht, Mario [Kerren, Andreas] [Klein, Karsten] [Kohlbacher, Oliver] [Mutzel, Petra] [Paul, Wolfgang] [Schreiber, Falk] [Wybrow, Michael] | [Eppstein, David] [Gansner, Emden R.] | 2010 | Proceedings Article | |
| On preferences of general two-sided tests with applications to Kolmogorov-Smirnov-type tests In: Statistics & Decisions [21], 115-136 | Rahnenführer, Jörg | | 2003 | Journal Article | |
| On the Applicability of Elastic Network Normal Modes in Small-Molecule Docking In: Journal of Chemical Information and Modeling [52], 844-856 | Dietzen, Matthias Zotenko, Elena [Hildebrandt, Andreas] Lengauer, Thomas | 2012 | Journal Article | ||
| On the power and limits of evolutionary conservation - unraveling bacterial gene regulatory networks In: Nucleic Acids Research [38], 7877-7884 | Baumbach, Jan | | 2010 | Journal Article | |
| On the predictability of CpG methylation in human tissue at single basepair resolution Universität des Saarlandes | Glaab, Enrico | 2006 | Thesis - Bachelor thesis | ||
| On the trail of EHEC/EAEC - unraveling the gene regulatory networks of human pathogenic Escherichia coli bacteria In: Integrative Biology [4], 728-733 | Pauling, Josch Röttger, Richard [Neuner, Andreas] [Salgado, Heladia] [Collado-Vides, Julio] Kalaghatgi, Prabhav [Azevedo, Vasco] [Tauch, Andreas] [Pühler, Alfred] Baumbach, Jan | | 2012 | Journal Article | |
| Online Transitivity Clustering of Biological Data with Missing Values In: German Conference on Bioinformatics 2012 (GCB 2012), 57-68 | Röttger, Richard Kreutzer, Christoph [Duong Vu, Thuy] [Wittkop, Tobias] Baumbach, Jan | [Böcker, Sebastian] [Hufsky, Franziska] [Scheubert, Kerstin] [Schleicher, Jana] [Schuster, Stefan] | 2012 | Electronic Proceedings Article | |
| Only Slight Impact of Predicted Replicative Capacity for Therapy Response Prediction In: PLoSOne [5], e9044,1-e9044,10 | Weisser, Hendrik Altmann, André [Sierra, Saleta] [Incardona, Francesca] [Struck, Daniel] [Sönnerborg, Anders] [Kaiser, Rolf] [Zazzi, Maurizio] [Tschochner, Monika] [Walter, Hauke] Lengauer, Thomas | | 2010 | Electronic Journal Article | |
| Ontology-based Similarity Measures and their Application in Bioinformatics Universität des Saarlandes | Schlicker, Andreas | 2010 | Thesis - PhD thesis | |
| Optimisation of baseline genotypic testing for safe and efficient maraviroc administration In: Journal of the International AIDS Society, 101-102 | [Sierra, Saleta] [Dzbowski, Jan Nikolaj] Pironti, Alejandro [Gueney, L] Thielen, Alexander [Reuter, Stefan] [Esser, Stefan] [Fätkenheuer, Gerd] Lengauer, Thomas [Hider, Dominik] [Hoffmann, Daniel] [Pfister, Holger] [Jensen, Björn] [Kaiser, Rolf] | [Kippax, Susan] [Salif Sow, Papa] [Wainberg, Mark] [Heidari, Shirin] | 2012 | Poster | |
| Optimization of Quantitative MGMT Promoter Methylation Analysis Using Pyrosequencing and Combined Bisulfite Restriction Analysis In: Journal of Molecular Diagnostics [9], 368-381 | [Mikeska, Thomas] Bock, Christoph [El-Maarri, Osman] [Hübner, Anika] [Ehrentraut, Denise] [Schramm, Johannes] [Felsberg, Jörg] [Kahl, Philip] [Büttner, Reinhard] [Pietsch, Torsten] [Waha, Andreas] | 2007 | Journal Article | |
| Parallel "go with the winners algorithms" in Distributed Memory Models In: Journal of Parallel and Distributed Processing [63], 801-814 | [Peinado, M.] Lengauer, Thomas | | 2003 | Journal Article | |
| Partitioning biological data with transitivity clustering In: Nature Methods [7], 419-420 | [Wittkop, Tobias] Emig, Dorothea [Lange, Sita] [Rahmann, Sven] Albrecht, Mario [Morris, John H.] [Böcker, Sebastian] [Stoye, Jens] Baumbach, Jan | 2010 | Journal Article | ||
| Patients with high grade gliomas harboring delections of chromosomes 9p and 10q benefit from temozolomide treatment In: Neoplasia [7], 883-893 | [Wemmert, Silke] [Ketter, Ralf] Rahnenführer, Jörg Beerenwinkel, Niko [Strowitzki, Martin] [Feiden, Wolfgang] [Hartmann, Christian] Lengauer, Thomas [Stockhammer, Florian] [Zang, Klaus D.] [Meese, Eckart] [Steudel, Wolf-Ingo] [von Deimling, Andreas] [Urbschat, Steffi] | | 2005 | Journal Article |
| Paving the future: finding suitable ISMB venues In: Bioinformatics [28], 2556-2559 | [Rost, Burkhard] [Gaasterland, Terry] Lengauer, Thomas [Linial, Michal] [Markel, Scott] [McKay, B. J. Morrison] [Schneider, Reinhard] [Horton, Paul] [Kelso, Janet] | 2012 | Journal Article | ||
| Peptidomimetic Escape Mechanisms Arise via Genetic Diversity in the Ligand-Binding Site of the Hepatitis C Virus NS3/4A Serine Protease In: Gastroenterology [142], 654-663 | [Welsch, Christoph] [Shimakami, Tetsuro] [Hartmann, Christoph] [Yang, Yan] [Domingues, Francisco S.] Lengauer, Thomas [Zeuzem, Stefan] [Lemon, Stanley M.] | | 2012 | Journal Article | |
| Performance of genotypic coreceptor measurement using geno2pheno[coreceptor] in B- and non-B HIV subtypes in a large cohort of therapy-experienced patients in Germany In: Reviews in Antiviral Therapy, 99-99 | Thielen, Alexander [Sichtig, Nadine] [Braun, Patrick] [Däumer, Martin] [Walter, Hauke] [Noah, Christian] [Wolf, Eva] [Müller, Harm] [Stürmer, Martin] Lengauer, Thomas [Kaiser, Rolf] [Obermeier, Martin] | 2009 | Poster | ||
| Permutation importance: an unbiased feature importance measure In: Bioinformatics [26], 1340-1347 | Altmann, André Tolosi, Laura Sander, Oliver Lengauer, Thomas | | 2010 | Journal Article | |
| PIPS: Pathogenicity Island Prediction Software In: PLoS One [7], e30848,1-e30848,10 | [Soares, Siomar C.] [Abreu, Vinícius A. C.] [Ramos, Rommel T. J.] [Cerdeira, Louise] [Silva, Artur] Baumbach, Jan [Trost, Eva] [Tauch, Andreas] [Hirata, Raphael] [Mattos-Guaraldi, Ana L.] [Miyoshi, Anderson] [Azevedo, Vasco] | 2012 | Electronic Journal Article | ||
| POEM: Parameter Optimization using Ensemble Methods: Application to target specific scoring functions In: Journal of Chemical Information and Modeling [45], 1291-1302 | Antes, Iris Merkwirth, Christian Lengauer, Thomas | | 2005 | Journal Article | |
| Population-based V3 genotypic tropism assay: a retrospective analysis using screening samples from the A4001029 and MOTIVATE studies In: AIDS [24], 2517-2525 | [McGovern, Rachel A] Thielen, Alexander [Mo, Theresa] [Dong, Winnie] [Woods, Conan K] [Chapman, Douglass] [Lewis, Marilyn] [James, Ian] [Heera, Jayvant] [Valdez, Hernan] [Harrigan, P Richard] | 2010 | Journal Article | ||
| Positive selection of HIV host factors and the evolution of lentivirus genes In: BMC Evolutionary Biology [10], 186,1-186,15 | Bozek, Katarzyna Lengauer, Thomas | | 2010 | Electronic Journal Article | |
| Predicting drug susceptibility of non-small cell lung cancers based on genetic lesions In: Journal of Clinical Investigation [119], 1727-1740 | [Sos, Martin L.] [Michel, Kathrin] [Zander, Thomas] [Weiss, Jonathan] [Frommolt, Peter] [Pfeifer, Martin] [Li, Danan] [Ullrich, Roland] [Koker, Mirjam] [Fischer, Florian] [Shimamura, Takeshi] [Rauh, Daniel] [Mermel, Craig] [Fischer, Stefanie] [Stückrath, Isabel] [Heynck, Stefanie] [Beroukhim, Rameen] [Lin, William] [Winckler, Wendy] [Shah, Kinjal] [LaFramboise, Thomas] [Moriarty, Whei F.] Hanna, megan Tolosi, Laura [Rahnenführer, Jörg] [Verhaak, Roel] [Chiang, Derek] [Getz, Gad] [Hellmich, Martin] [Wolf, Jürgen] [Girard, Luc] [Peyton, Michael] [Weir, Barbara A.] [Chen, Tzu-Hsiu] [Greulich, Heidi] [Barretina, Jordi] [Shapiro, Geoffrey I.] [Garraway, Levi A.] [Gazdar, Adi F.] [Minna, John D.] [Meyerson, Matthew] [Wong, Kwok-Kin] [Thomas, Roman K.] | 2009 | Journal Article | ||
| Predicting HIV coreceptor usage on the basis of genetic and clinical covariates In: Antiviral Therapy [12], 1097-1106 | Sing, Tobias Low, Andrew J. Beerenwinkel, Niko Sander, Oliver [Cheung, Peter K.] Domingues, Francisco S. Büch, Joachim [Däumer, Martin] [Kaiser, Rolf] Lengauer, Thomas [Harrigan, P. Richard] | | 2007 | Journal Article | |
| Predicting interactions between T cell receptors and MHC-peptide complexes In: Molecular Immunology [48], 553-562 | Roomp, Kirsten Domingues, Francisco S. | 2011 | Journal Article | ||
| Predicting MHC class I epitopes in large datasets In: BMC Bioinformatics [11], 90,1-90,11 | Roomp, Kirsten Antes, Iris Lengauer, Thomas | | 2010 | Electronic Journal Article | |
| Predicting Protein Structure Classes from Function Predictions In: Bioinformatics [20], 770-776 | Sommer, Ingolf Rahnenführer, Jörg Domingues, Francisco S. [de Lichtenberg, Ulrik] Lengauer, Thomas | 2004 | Journal Article | ||
| Predicting Response to Antiretroviral Treatment by Machine Learning: The EuResist Project In: Intervirology [55], 123-127 | [Zazzi, Maurizio] [Incardona, Francesca] [Rosen-Zvi, Michal] [Prosperi, Mattia] Lengauer, Thomas Altmann, Andre [Sonnerborg, Anders] [Lavee, Tamar] [Schülter, Eugen] [Kaiser, Rolf] | | 2012 | Journal Article | |
| Predicting the Response to Combination Antiretroviral Therapy: Retrospective Validation of geno2pheno-THEO on a Large Clinical Database In: The Journal of Infectious Diseases [199], 999-1006 | Altmann, André [Däumer, Martin] [Beerenwinkel, Niko] [Peres, Yardena] [Schülter, Eugen] Büch, Joachim [Rhee, Soo-Yon] [Sönnerborg, Anders] [Fessel, W. Jeffrey] [Shafer, Robert W.] [Zazzi, Maurizio] [Kaiser, Rolf] Lengauer, Thomas | 2009 | Journal Article | ||
| Prediction of Domain and Motif Interactions from Protein Networks Universität des Saarlandes | Schelhorn, Sven-Eric | | 2007 | Thesis - Masters thesis | |
| Prediction of HIV-1 coreceptor usage (tropism) by sequence analysis using a genotypic approach In: Journal of Visualized Experiments [58], e3264,1-e3264,9 | [Sierra, Saleta] [Kaiser, Rolf] [Lübke, Nadine] Thielen, Alexander [Schuelter, Eugen] [Heger, Eva] [Däumer, Martin] [Reuter, Stefan] [Esser, Stefan] [Fätkenheuer, Gerd] [Pfister, Herbert] [Oette, Mark] Lengauer, Thomas | 2011 | Electronic Journal Article | ||
| Prediction of linear B-cell epitopes and MHC class II binding peptides Eberhardt-Karls-Universität Tübingen | Thielen, Alexander | | 2006 | Thesis - Masters thesis | |
| Prediction of percutaneous drug absorption In: Journal of Chemical Information and Modeling [1], 424-429 | [Neumann, Dirk] [Kohlbacher, Oliver] [Merkwirth, Christian] Lengauer, Thomas | 2006 | Journal Article | ||
| Prediction of Response to Antiretroviral Therapy by Human Experts and by the EuResist Data-Driven Expert System (the EVE study) In: HIV Medicine [12], 211-218 | [Zazzi, M.] [Kaiser, R.] [Sönnerborg, A.] [Struck, D] Altmann, Andre [Prosperi, M.] [Rosen-Zvi, M.] [Petroczi, A.] [Peres, Y.] [Schülter, E.] [Boucher, C.A.] [Brun-Vezinet, F.] [Harrigan, R.] [Morris, L.] [Obermeier, M.] [Perno, C.-F.] [Phanuphak, P.] [Pillay, D] [Shafer, R.W.] [Vandamme, A.-M.] [Van Laethem, K.] [Wensing, A.] Lengauer, Thomas [Incardona, F.] | | 2011 | Journal Article | |
| Prediction of Response to Antiretroviral Therapy by Human Experts and by the EuResist Data-Driven Expert System (the EVE Study) In: HIV Medicine [Early View], 1-8 | [Zazzi, Maurizio] [Kaiser, Rolf] [Sönnerborg, Anders] [Struck, Daniel] Altmann, Andre [Prosperi, Mattia C. F.] [Rosen-Zvi, Michal] [Petroczi, Andrea] [Peres, Yardena] [Schülter, Eugen] [Boucher, Charles] [Brun-Vezinet, Francoise] [Harigan, Richard] [Morris, Lynn] [Obermeier, Martin] [Perno, Federico] [Shafer, Robert] [Vandamme, Anne-Mieke] [van Laethem, Kristel] [Wensing, Annemarie] Lengauer, Thomas [Incardona, Francesca] | 2010 | Electronic Journal Article | ||
| Prediction of Thermostability from Amino Acid Attributes by Combination of Clustering with Attribute Weighting: A New Vista in Engineering Enzymes In: PLoS One [6], e23146,1-e23146,11 | [Ebrahimi, Mansou] [Lakizadeh, Amir] [Agha-Golzadeh, Esmaeil] Ebrahimi, Mahdi | | 2011 | Electronic Journal Article | |
| Preface: Special RECOMB 2001 Issue In: Journal of Computational Biology [9], 147-148 | Lengauer, Thomas | 2002 | Journal Article | ||
| Preparation of reduced representation bisulfite sequencing libraries for genome-scale DNA methylation profiling In: Nature Protocols [6], 468-481 | [Gu, Hongcang] [Smith, Zachary D.] Bock, Christoph [Boyle, Patrick] [Gnirke, Andreas] [Meissner, Alexander] | | 2011 | Journal Article | |
| Prevalence and characteristics of hepatitis B and C virus infections in treatment-naïve HIV-infected patients In: Medical Microbiology and Immunology [200], 39-49 | [Reuter, Stefan] [Oette, Mark] [Wilhelm, Frank Clemens] Beggel, Bastian [Kaiser, Rolf] [Balduin, Melanie] [Schweitzer, Finja] [Verheyen, Jens] [Adams, Ortwin] Lengauer, Thomas [Faetkenheuer, Gerd] [Pfister, Herbert] [Haeussinger, Dieter] | 2011 | Journal Article | ||
| Probabilistic disease gene prioritization Universität des Saarlandes | Pironti, Alejandro | | 2009 | Thesis - Masters thesis | |
| Proceedings ISMB2007 | Lengauer, Thomas [Rost, B.] [Schuster, P.] | 2007 | Proceedings | ||
| Proceedings of the 5th Annual Conference on Research in Computational Molecular Biology (RECOMB2001) | | Lengauer, Thomas [Sankoff, D.] [Istrail, P.] [Pevzner, P.] [Waterman, M.S.] | 2001 | Book | |
| Proceedings of the European Conference on Computational Biology (ECCB 2002) | Lengauer, Thomas [Lenhof, Hans-Peter] | 2002 | Proceedings | ||
| Proceedings Twelfth International Conference on Intelligent Systems for Molecular Biology/Third European Conference on Computional Biology 2004 (ISMB/ECCB 2004) | | [Thornton, J.] [Bourne, P.] [Gilbert, D.] [Goble, C.] [Goldman, N.] [Gribskov, M.] [Hide, W.] [Higgins, D.] [Kanehisa, M.] Lengauer, Thomas [Linial, M.] [Myers, G.] [Quackenbush, J.] [Rebholz-Schuhmann, D.] [Rost, B.] [Sowdhamini, R.] [Valencia, A.] [Vingron, M.] [Xu, Y.] | 2004 | Proceedings | |
| Processing of high-throughput DNA methylation data Universität des Saarlandes | Lutsik, Pavlo | 2010 | Thesis - Masters thesis | ||
| Profile-Profile Alignment: A Powerful Tool For Protein Structure Prediction In: Pacific Symposium on Biocomputing, PSB 2003, 252-263 | [von Öhsen, Niklas] Sommer, Ingolf [Zimmer, Ralf] | | 2003 | Proceedings Article | |
| ProML - the Protein Markup Language for specification of protein sequences, structures and families In: In Silico Biology [2], 313 - 324 | [Hanisch, Daniel] [Zimmer, Ralf] Lengauer, Thomas | 2002 | Journal Article | ||
| Protease Inhibitor-Resistant Hepatitis C Virus Mutants With Reduced Fitness From Impaired Production of Infectious Virus In: Gastroenterology [140], 667-675 | [Shimakami, Tetsuro] Welsch, Christoph [Yamane, Daisuke] [McGivern, David R.] [Yi, MinKyung] [Zeuzem, Stefan] [Lemon, Stanley M.] | | 2011 | Journal Article | |
| Protein-protein interactions: analysis and prediction In: Modern Genome Annotation - The Biosapiens Network, 353-410 | [Frishman, Dmitrij] Albrecht, Mario Blankenburg, Hagen [Bork, Peer] [Harrington, Eoghan D.] [Hermjakob, Henning] [Jensen, Lars J.] [Juan, David A.] Lengauer, Thomas [Pagel, Philipp] [Schachter, Vincent] [Valencia, Alfonso] | [Frishman, Dmitrij] [Valencia, Alfonso] | 2009 | Part of a Book | |
| Protein Fold Recognition Based on Distant Homologs In: Bioinformatics - From Genomes to Therapies 1. The Building Blocks: Molecular Sequences and Structures, 351-388 | Sommer, Ingolf | Lengauer, Thomas | 2007 | Part of a Book | |
| Protein Function from Sequence and Structure Data In: Applied Bioinformatics [2], 3-12 | Domingues, Francisco S. Lengauer, Thomas | 2003 | Journal Article | ||
| Protein phosphatase and TRAIL receptor genes as new candidate tumor genes on chromosome 8p in prostate cancer In: Cancer Genomics & Proteomics [5], 123-136 | [Hornstein, Max] [Hoffmann, Michele J.] Alexa, Adrian [Yamanaka, Masanori] [Müller, Mirko] [Jung, Volker] [Rahnenführer, Jörg] [Schulz, Wolfgang A.] | | 2008 | Journal Article | |
| Protein Structure Prediction and Databases In: Nature Encyclopedia of the Human Genome, 864-867 | Domingues, Francisco S. Lengauer, Thomas Sommer, Ingolf | Cooper, David | 2004 | Part of a Book | |
| Protein Surface Remeshing and Characterisation Using Morse-Smale Complexes Universität des Saarlandes | Stöckel, Daniel | | 2008 | Thesis - Bachelor thesis | |
| PSICQUIC and PSISCORE: accessing and scoring molecular interactions In: Nature Methods [8], 528-529 | [Aranda, Bruno] Blankenburg, Hagen [Kerrien, Samuel] [Brinkman, Fiona S.] [Ceol, Arnaud] [Chautard, Emilie] [Dana, Jose M.] [De Las Rivas, Javier] [Dumousseau, Marine] [Galeota, Eugenia] [Gaulton, Anna] [Goll, Johannes] [Hancock, Robert E. W.] [Isserlin, Ruth] [Jimenez, Rafael C.] [Kerssemakers, Jules] [Khadake, Jyoti] [Lynn, David J.] [Michaut, Magali] [O'Kelly, Gavin] [Ono, Keiichiro] [Orchard, Sandra] [Prieto, Carlos] [Razick, Sabry] [Rigina, Olga] [Salwinski, Lukasz] [Simonovic, Milan] [Velankar, Sameer] [Winter, Andrew] [Wu, Guanming] [Bader, Gary D.] [Cesareni, Gianni] [Donaldson, Ian M.] [Eisenberg, David] [Kleywegt, Gerard J.] [Overington, John] [Ricard-Blum, Sylvie] [Tyers, Mike] Albrecht, Mario [Hermjakob, Henning] | 2011 | Journal Article | ||
| Pyranose oxidase identified as a member of the GMC oxidoreductase family In: Bioinformatics [19], 1216-1220 | Albrecht, Mario Lengauer, Thomas | | 2003 | Journal Article | |
| Quantitative comparison of genome-wide DNA methylation mapping technologies In: Nature Biotechnology [28], 1106-1114 | Bock, Christoph [Tomazou, Eleni M.] [Brinkman, Arie B.] Müller, Fabian [Simmer, Femke] [Gu, Hongcang] [Jäger, Natalie] [Gnirke, Andreas] [Stunnenberg, Hendrik G.] [Meissner, Alexander] | 2010 | Journal Article | |
| Quantitative phenotype prediction by support vector machines In: Proceedings from the 5th International Workshop on HIV Drug resistance & Treatment Strategies, 97 | Beerenwinkel, Niko Lengauer, Thomas [Schmidt, Barbara] [Walter, Hauke] [Kaiser, Rolf] [Hoffmann, Daniel] [Korn, Klaus] [Selbig, Joachim] | | 2002 | Proceedings Article | |
| Rapid hybrid de novo assembly of a microbial genome using only short reads: Corynebacterium pseudotuberculosis I19 as a case study In: Journal of Microbiological Methods [86], 218-223 | [Cerdeira, Louise Teixeira] [Carneir, Aadriana Ribeiro] [Ramos, Rommel Thiago Juca] [de Almeida, Sintia Silva] [D'Afonseca, Vivian] [Schneider, Maria Paula Cruz] Baumbach, Jan [Tauch, Andreas] [McCulloch, John Anthony] [Azevedo, Vasco Ariston Carvalho] [Silva, Aartur] | 2011 | Journal Article | ||
| Reaction graph kernels predict EC numbers of unknown enzymatic reactions in plant secondary metabolism In: BMC Bioinformatics [11], S31,1-S31,7 | Saigo, Hiroto [Hattori, Masahiro] [Kashima, Hisashi] [Tsuda, Koji] | | 2010 | Electronic Journal Article | |
| Recco: recombination analysis using cost optimization In: Bioinformatics [22], 1064-1071 | Maydt, Jochen Lengauer, Thomas | 2006 | Journal Article | ||
| Recent approaches to the prioritization of candidate disease genes In: Wiley Interdisciplinary Reviews: Systems Biology and Medicine [4], 429-442 | Doncheva, Nadezhda T Kacprowski, Tim Albrecht, Mario | | 2012 | Journal Article | |
| Reconstructing anecestral methylation states in phylogenetic trees Universität des Saarlandes | Koser, Sandra | 2012 | Thesis - Masters thesis | ||
| Reconstructing the ancestral germline methylation state of young repeats In: Molecular Biology and Evolution [28], 1777-1784 | Feuerbach, Lars [Lyngso, Rune B.] Lengauer, Thomas [Hein, Jotun] | | 2011 | Journal Article | |
| Recruitment and activation of a lipid kinase by hepatitis C virus NS5A is essential for integrity of the membranous replication compartment In: Cell Host & Microbe [9], 32-45 | [Reiss, Simon] [Rebhan, Ilka] [Backes, Perdita] [Romero-Brey, Ines] [Erfle, Holger] [Matula, Petr] [Kaderali, Lars] [Poenisch, Marion] Blankenburg, Hagen [Hiet, Marie-Sophie] [Longerich, Thomas] Diehl, Sarah Ramírez, Fidel [Balla, Tamas] [Rohr, Karl] [Kaul, Artur] [Bühler, Sandra] [Pepperkok, Rainer] Lengauer, Thomas Albrecht, Mario [Eils, Roland] [Schirmacher, Peter] [Lohmann, Volker] [Bartenschlager, Ralf] | 2011 | Journal Article | ||
| Reference Maps of Human ES and iPS Cell Variation Enable High-Throughput Characterization of Pluripotent Cell Lines In: Cell [144], 439-452 | Bock, Christoph [Kiskinis, Evangelos] [Verstappen, Griet] [Gu, Hongcang] [Boulting, Gabriella] [Smith, Zachary D.] [Ziller, Michael] [Croft, Gist F.] [Amoroso, MacKenzie W.] [Oakley, Derek H.] [Gnirke, Andreas] [Eggan, Kevin] [Meissner, Alexander] | | 2011 | Journal Article | |
| Refinement of homology modeled protein structures for molecular docking In: Proceedings of the 367. WE-Heraeus Seminar on Biomolecular Simulations, 1 | Antes, Iris Lengauer, Thomas | 2006 | Poster | ||
| Regulation of clock-controlled genes in mammals. In: PLoS One [4], e4882:1-e4882:12 | Bozek, Kasia [Relógio, Angela] [Kielbasa, Szymon M.] [Heine, Markus] [Dame, Christof] [Kramer, Achim] [Herzel, Hanspeter] | | 2009 | Electronic Journal Article | |
| Relevance of HIV gag cleavage site mutations in failures of protease inhibitor therapies In: Antiviral Therapy, A53 | [Verheyen, Jens] Altmann, Andre [Knops, Elena] [Schülter, Eugen] [Sichtig, Nadine] [Reuter, Stefan] [Fätkenheuer, Gerd] [Pfister, Herbert] [Kaiser, Rolf] | 2008 | Poster | ||
| Replication enhancing mutations of the Hepatitis C virus replicon: Prevalence and clinical significance in patients with chronic Hepatitis C In: Journal of Infectious Diseases [192], 1710-1719 | Lengauer, Thomas Albrecht, Mario [Sarrazin, C.] [Mihm, U.] [Herrmann, E.] Welsch, Christoph [Sarrazin, U.] [Traver, S.] [Zeuzem, S.] | | 2005 | Journal Article | |
| Resistance proteins: molecular switches of plant defence In: Current Opinion in Plant Biology [9], 383-390 | Takken, Frank L. W. Albrecht, Mario [Tameling, Wladimir I.] | 2006 | Journal Article | ||
| Resistenzbestimmung In: MMW Fortschritte in der Medizin [151], 74-75 | Lengauer, Thomas [Sierra, S.] [Kaiser, Rolf] | | 2009 | Journal Article | |
| Retinal properties and potential of the adult mammalian ciliary epithelium stem cells In: Vision Research [45], 1653-1666 | [Das, Ani V.] [James, Jackson] Rahnenführer, Jörg [Thoresona, Wallace B.] [Bhattacharyaa, Sumitra] [Zhao, Xing] [Ahmad, Iqbal] | 2005 | Journal Article | ||
| RhizoRegNet - A database of rhizobial transcription factors and regulatory networks. In: Journal of Biotechnology [155], 127-134 | [Krol, Elizaveta] [Blom, Jochen] [Winnebald, Jörn] [Berhörster, Alexander] [Barnett, Melanie J.] [Goesmann, Alexander] Baumbach, Jan [Becker, Anke] | | 2011 | Journal Article | |
| Risk factors associated with older age in treatment-naive HIV-positive patients In: Intervirology [55], 147-153 | [Reuter, Stefan] [Oette, Mark] [Kaiser, Rolf] Lengauer, Thomas [Fätkenheuer, Gerd] [Rockstroh, Jürgen] [Knechten, Heribert] [Häussinger, Dieter] | 2012 | Journal Article | ||
| ROCR: Visualizing classifier performance in R In: Bioinformatics [21], 3940-3941 | Sing, Tobias Sander, Oliver Beerenwinkel, Niko Lengauer, Thomas | | 2006 | Journal Article | |
| Role of hepatitis B virus genetic barrier in drug-resistance and immune-escape development In: Digestive and Liver Disease [43], 975-983 | [Svicher, Valentina] [Cento, Valeria] [Salpini, Romina] [Mercurio, Fabio] [Fraune, Maria] Beggel, Bastian [Han, Yue] [Gori, Caterina] [Wittkop, Linda] [Bertoli, Ada] [Micheli, Valeria] [Gubertini, Guido] [Longo, Roberta] [Romano, Sara] [Visca, Michela] [Gallinaro, Valentina] [Marino, Nicoletta] [Mazzotta, Francesco] [De Sanctis, Giuseppe Maria] [Fleury, Hervè] [Trimoulet, Pascale] [Angelico, Mario] [Cappiello, Giuseppina] [Zhang, Xin Xin] [Verheyen, Jens] [Ceccherini-Silberstein, Francesca] [Perno, Carlo Federico] | 2011 | Journal Article | ||
| Role of hepatitis B virus genetic barrier in drug-resistance and immune-escape development In: Digestive and Liver Disease [43], 975–983 | [Svichera, Valentina] [Centoa, Valeria] [Salpinia, Romina] [Mercurioa, Fabio] [Fraune, Maria] Beggel, Bastian [Hanc, Yue] [Gorid, Caterina] [Wittkope, Linda] [Bertolif, Ada] [Michelig, Valeria] [Gubertinig, Guido] [Longoh, Roberta] [Romanoh, Sara] [Viscah, Michela] [Gallinaroi, Valentina] [Marinoj, Nicoletta] [Mazzottaj, Francesco] [De Sanctisi, Giuseppe Maria] [Fleurye, Hervè] [Trimoulete, Pascale] [Angelicoa, Mario] [Cappielloh, Giuseppina] [Zhangc, Xin Xin] [Verheyenb, Jens] [Ceccherini-Silbersteina, Francesca] [Pernoa, Carlo Federico] | | 2011 | Journal Article | |
| RRBSMAP: a fast, accurate and user-friendly alignment tool for reduced representation bisulfite sequencing In: Bioinformatics [28], 430-432 | [Xi, Yuanxin] Bock, Christoph Müller, Fabian [Sun, Deqiang] [Meissner, Alexander] [Li, Wei] | 2012 | Journal Article | ||
| RRBSMAP: A Fast, Accurate and User-friendly Alignment Tool for Reduced Representation Bisulfite Sequencing In: Bioinformatics [28], 430-432 | [Xi, Yuanxin] Bock, Christoph Müller, Fabian [Sun, Deqiang] [Meissner, Alexander] [Li, Wei] | | 2011 | Journal Article | |
| Rtreemix: an R package for estimating evolutionary pathways and genetic progression scores In: Bioinformatics [24], 2391-2392 | Bogojeska, Jasmina Alexa, Adrian Altmann, André Lengauer, Thomas [Rahnenführer, Jörg] | 2008 | Journal Article | |
| Sarcoidosis is associated with a truncating splice site mutation in BTNL2 In: Nature Genetics [37], 357-364 | [Valentonyte, Ruta] [Hampe, Jochen] [Huse, Klaus] [Rosenstiel, Philip] Albrecht, Mario [Stenzel, Annette] [Nagy, Marion] [Gaede, Karoline I.] [Franke, Andre] [Haesler, Robert] [Koch, Andreas] Lengauer, Thomas [Seegert, Dirk] [Reiling, Norbert] [Ehlers, Stefan] [Schwinger, Eberhard] [Platzer, Mathias] [Krawczak, Michael] [Müller-Quernheim, Joachim] [Schürmann, Manfred] [Schreiber, Stefan] | | 2005 | Journal Article | |
| Scoring pathway activity from gene expression data Universität des Saarlandes | Bayjanov, Jumamurat | 2004 | Thesis - Masters thesis | ||
| Screening for HIV tropism using population-based V3 genotypic analysis: a retrospective outcome analysis using stored plasma screening samples from MOTIVATE-1 In: Abstracts presented at the XVIII International HIV Drug Resistance Workshop : Basic Principles & Clinical Implications, A17-A17 | [Harrigan, P Richard] [McGovern, Rachel] [Dong, Winnie] Thielen, Alexander [Jensen, Mark] [Mo, Theresa] [Chapman, Douglas] [Lewis, Marilyn] [James, Ian] [Valdez, Hernan] | | 2009 | Poster | |
| Selecting anti-HIV therapies based on a variety of genomic and clinical factors In: Proceedings of the 16th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB 2008), i399-406 | [Rosen-Zvi, Michal] Altmann, Andre [Prosperi, Mattia] [Aharoni, Ehud] [Neuvirth, Hani] [Sönnerborg, Anders] [Schülter, Eugen] [Struck, Daniel] [Peres, Yardena] [Incardona, Francesca] [Kaiser, Rolf] [Zazzi, Maurizio] Lengauer, Thomas | 2008 | Proceedings Article | ||
| Selective pressures of HLA genotypes and antiviral therapy on human immunodeficiency virus type 1 sequence mutation at a population level In: Clinical and Vaccine Immunology [14], 1266-1273 | [Ahlenstiel, G.] Roomp, Kirsten Däumer, Martin [Nattermann, T.] [Vogel, M.] [Rockstroh, J.K.] Beerenwinkel, Niko Kaiser, R. [Nischalke, H.-D.] [Sauerbruch, T.] Lengauer, Thomas [Spengler, U.] | | 2007 | Journal Article |
| Semi-Supervised Learning for Predicting Anti-HIV Drug Resistance Universität des Saarlandes | Perner, Juliane | 2008 | Thesis - Bachelor thesis | |
| Sequence variants in IL10, ARPC2, and multiple other loci contribute to ulcerative colitis In: Nature Genetics [40], 1319-1323 | [Franke, Andre] [Balschun, Tobias] [Karlsen, Tom H.] [Sventoraityte, Jurgita] [Nikolaus, Susanna] Mayr, Gabriele Domingues, Francisco S. Albrecht, Mario [Nothnagel, Michael] [Ellinghaus, David] [Sina, Christian] [Onnie, Clive M.] [Weersma, Rinse K.] [Stokkers, Pieter C. F.] [Wijmenga, Cisca] [Gazouli, Maria] [Strachan, David] [McArdle, Wendy L.] [Vermeire, Séverine] [Rutgeers, Paul] [Rosenstiel, Philip] [Krawczak, Michael] [Vatn, Morten H.] [IBSEN study group, the] [Mathew, Christopher G.] [Schreiber, Stefan] | | 2008 | Journal Article | |
| Short Communication: Selection of Thymidine Analogue Resitance Mutational Patterns in Children from a Common HIV Type 1 Subtype G Source In: AIDS Research and Human Retroviruses [26], 275-278 | [Däumer, Martin] [Awerkiew, Sabine] [Sierra Aragon, Saleto] [Kartashev, Vladimir] [Poplavskaja, Tatjana] [Klein, Rolf] [Sichtig, Nadine] [Thielen, Bernhard] Lengauer, Thomas Roomp, Kirsten [Pfister, Herbert] [Kaiser, Rolf] | 2010 | Journal Article | ||
| Simple consensus procedures are effective and sufficient in secondary structure prediction In: Protein Engineering [16], 459-462 | Albrecht, Mario [Tosatto, Silvio C.E.] Lengauer, Thomas [Valle, Giorgio] | | 2003 | Journal Article | |
| Software tool for automated processing of 13C labeling data from mass spectrometry data In: BioTechniques [35], 1214-1215 | Talwar, Priti [Wittmann, Christoph] Lengauer, Thomas [Heinzle, Elmar] | 2003 | Journal Article | ||
| Somatic hypermutation and mRNA expression levels of the BCL-6 gene in patients with hepatitis C virus-associated lymphoproliferative diseases In: Journal of Viral Hepatitis [14], 484-491 | [Hofmann, Wolf Peter] [Fernandez, B.] [Herrmann, E.] Welsch, Christoph [Mihm, Ulrike] [Kronenberg, B.] [Feldmann, G.] [Spengler, U.] [Zeuzem, Stefan] [Sarrazin, Christoph] | | 2007 | Journal Article | |
| Specificity of linear motifs that bind to a common mitogen-activated protein kinase docking groove In: Science Signaling [5], ra74,1-ra74,14 | [Garai, Ágnes] [Zeke, András] [Gógl, Gergo] [Töro, Imre] [Fördos, Ferenc] Blankenburg, Hagen [Bárkai, Tünde] [Varga, János] [Alexa, Anita] Emig, Dorothea Albrecht, Mario [Reményi, Attila] | 2012 | Journal Article | ||
| Stability analysis of mixtures of mutagenetic trees In: BMC Bioinformatics [9], 165-181 | Bogojeska, Jasmina Lengauer, Thomas [Rahnenführer, Jörg] | | 2008 | Journal Article | |
| Stability analysis of oncogenetic trees mixture models Universität des Saarlandes | Bogojeska, Jasmina | 2007 | Thesis - Masters thesis | ||
| Stable coreceptor usage of HIV-1 in patients with ongoing treatment failure on HAART In: Proceedings of the 3rd European HIV Drug Resistance Workshop, - | [Kaiser, Rolf] [Boussaad, Ibo] [Lehmann, C.] [Däumer, Martin] Sing, Tobias [Schmeisser, N.] [Wyen, C.] Fätkenheuer, Gerd | | 2005 | Proceedings Article | |
| Stable coreceptor usage of HIV in patients with ongoing treatment failure on HAART In: Journal of Clinical Virology [37], 300-304 | [Lehmann, Clara] [Däumer, Martin] [Bousaad, Ibrahim] Sing, Tobias [Beerenwinkel, Niko] Lengauer, Thomas [Schmeisser, Norbert] [Wyen, Christoph] [Fätkenheuer, Gerd] [Kaiser, Rolf] | 2006 | Journal Article | ||
| Statistical Inference for Clustering Microarrays In: Proceedings of the MSRI Workshop: Nonlinear Estimation and Classification, 323-332 | Rahnenführer, Jörg | [Denison, David D.] [Hansen, Mark H.] [Holmes, Christopher C.] [Mallick, Bani] [Yu, Bin] | 2003 | Proceedings Article | |
| Statistical Learning Methods for Bias-aware HIV Therapy Screening Universität des Saarlandes | Bogojeska, Jasmina | 2011 | Thesis - PhD thesis | |
| Statistical methods for the biological interpretation of genome-wide measurements Universität des Saarlandes | Rahnenführer, Jörg | | 2006 | Thesis - Habilitation thesis | |
| Stochastic Gradient Descent Training of Ensembles of DT-CNN Classifiers for Digit Recognition In: Proceedings of the 16th European Conference on Circuit Theory and Design ECCTD'03, 337-341 | Merkwirth, Christian [Ogorzalek, Maciej] [Wichard, Jörg Daniel] | [Ogorzalek, Maciej] [Galias, Zbigniew] [Garda, Bartlomiej] [Kadeja, Bartlomiej] | 2003 | Proceedings Article |
| Strategiekonzept "Molekulare Bioinformatik" In: Informatikforschung in Deutschland, 9 | Lengauer, Thomas | Reuse, Bernd Vollmar, Roland | 2007 | Part of a Book | |
| Structural and functional analysis of a novel mutation of CYP21B in a heterozygote carrier of 21-hydroxylase deficiency In: Human Genetics [117], 558-564 | [Bojunga, Jörg] [Welsch, Christoph] Antes, Iris Albrecht, Mario Lengauer, Thomas [Zeuzem, Stefan] | 2005 | Journal Article | ||
| Structural and functional analysis of ataxin-2 and ataxin-3 In: European Journal of Biochemistry [271], 3155-3170 | Albrecht, Mario [Golatta, Michael] [Wüllner, Ullrich] Lengauer, Thomas | | 2004 | Journal Article | |
| Structural and functional comparison of the non-structural protein 4B of flaviviridae In: Journal of Molecular Graphics and Modeling [26], 546-557 | Welsch, Christoph Albrecht, Mario Maydt, Jochen [Herrmann, E.] [Welker, M.W.] [Sarrazin, C.] [Scheidig, A.] Lengauer, Thomas Zeuzem, S. | 2007 | Journal Article | ||
| Structural conservation versus functional divergence of maternally expressed microRNAs in the Dlk1/Gtl2 imprinting region In: BMC Genomics [9], 346 | Kircher, Martin Bock, Christoph Paulsen, Martina | | 2008 | Journal Article |
| Structural Descriptors for the Analysis of Protein Structure, Function, and Evolution Universität des Saarlandes | Sander, Oliver | 2008 | Thesis - PhD thesis | ||
| Structural Descriptors of gp120 V3 Loop for the Prediction of HIV-1 Coreceptor Usage In: PLoS Computational Biology [3], 555-564 | Sander, Oliver Sing, Tobias Sommer, Ingolf [Low, Andrew J.] [Cheung, Peter K.] [Harrigan, P. Richard] Lengauer, Thomas Domingues, Francisco S. | | 2007 | Journal Article |
| Structural descriptors of protein-protein binding sites In: Proceedings of 6th Asia-Pacific Bioinformatics Conference, 79-88 | Sander, Oliver Domingues, Francisco S. Zhu, Hongbo Lengauer, Thomas Sommer, Ingolf | [Brazma, Alvis] [Miyano, Satoru] [Akutsu, Tatsuya] | 2008 | Proceedings Article | |
| Structural localization of disease-associated sequence variations in the NACHT and LRR domains of PYPAF1 and NOD2 In: FEBS Letters [554], 520-528 | Albrecht, Mario Domingues, Francisco S. [Schreiber, Stefan] Lengauer, Thomas | | 2003 | Journal Article | |
| Structural modeling of ataxin-3 reveals distant homology to adaptins In: Proteins: Structure, Function, and Genetics [50], 355-370 | Albrecht, Mario [Hoffmann, Daniel] [Evert, Bernd O.] [Schmitt, Ina] [Wüllner, Ullrich] Lengauer, Thomas | 2003 | Journal Article | ||
| Structure-based prediction of HIV-1 drug resistance Universität des Saarlandes | Fischer, Sandra | | 2008 | Thesis - Masters thesis | |
| Structure-function analysis of the NB-ARC domain of plant disease resistance proteins In: Journal of Experimental Botany [59], 1383-1397 | [Van Ooijen, Gerben] Mayr, Gabriele [Kasiem, Mobien M. A.] Albrecht, Mario [Cornelissen, Ben J. C.] [Takken, Frank L. W.] | 2008 | Journal Article | ||
| Structure collisions between interacting proteins In: PLoS ONE [6], e19581,1-e19581,7 | Emig, Dorothea Sander, Oliver Mayr, Gabriele Albrecht, Mario | | 2011 | Electronic Journal Article | |
| Structure to function In: Modern Genome Annotation, 239-262 | [Watson, James D.] [Thornton, Janet M.] [Tress, Michael L.] [Lopez, Gonzalo] [Valencia, Alfonso] [Redfern, Oliver] [Orengo, Christine A.] Sommer, Ingolf Domingues, Francisco S. | [Frishman, Dmitrij] [Valencia, Alfonso] | 2008 | Part of a Book | |
| Survey on the PABC recognition motif PAM2 In: Biochemical and Biophysical Research Communications [316], 129-138 | Albrecht, Mario Lengauer, Thomas | | 2004 | Journal Article | |
| Sustaining lamivudine/emtricitabine, abacavir, zidovudine or atazanavir from a previous treatment shows a clinical benefit In: Antiviral Therapy, A86 | [Rosen-Zvi, Michal] [Schülter, Eugen] Altmann, Andre [Sierra-Aragon, Saleta] [Zazzi, Maurizio] [Sönnerborg, Anders] [Oette, Mark] Lengauer, Thomas [Kaiser, Rolf] | 2008 | Poster | ||
| Synthesis and evaluation of heteroaryl substituted dihydronaphthalenes and indenes: potent and selective inhibitors of aldosterone synthase (CYP11B2) for the treatment of congestive heart failure and myocardial fibrosis In: Journal of Medicinal Chemistry [49], 2222-2231 | [Voets, Marieke] Antes, Iris [Scherer, Christiane] [Müller-Vieira, Ursula] [Biemel, Klaus] [Marchais-Oberwinkler, Sandrine] [Hartmann, Rolf W.] | | 2006 | Journal Article | |
| Synthesis and Evaluation of Imidazolylmethylenetetrahydronaphthalenes and Imidazolylmethyleneindanes: Potent Inhibitors of Aldosterone Synthase In: Journal of Medicinal Chemistry [48], 1796-1805 | [Ulmschneider, Sarah] [Mueller-Vieira, Ursula] [Mitrenga, Markus] [Hartmann, Rolf W.] [Oberwinkler-Marchais, S] [Klein, Christian D.] [Bureik, M.] [Bernhardt, R.] Antes, Iris Lengauer, Thomas | 2005 | Journal Article | ||
| Synthesis and Evaluation of Pyridylmethylene-tetrahydronaphthalenes and -indanes: Potent and Selective Inhibitors of Aldosterone Synthase (CYP11B2) In: Journal of Medicinal Chemistry [48], 4489-4490 | [Ulmschneider, Sarah] [Mueller-Vieira, Ursula] [Klein, Christian D.] Antes, Iris Lengauer, Thomas [Hartmann, Rolf W.] | | 2005 | Journal Article | |
| Systematic association mapping identifies NELL1 as a novel IBD disease gene In: PLoS ONE [2], e691.1-13 | [Franke, Andre] [Hampe, Jochen] [Rosenstiel, Philip] [Becker, Christoph] [Wagner, Florian] [Häsler, Robert] [Little, Randall D.] [Huse, Klaus] [Ruether, Andreas] [Balschun, Tobias] [Wittig, Michael] [ElSharawy, Abdou] Mayr, Gabriele Albrecht, Mario [Prescott, Natalie J.] [Onnie, Clive M.] [Fournier, Hélène] [Keith, Tim] [Radelof, Uwe] [Platzer, Matthias] [Mathew, Christopher G.] [Stoll, Monika] [Krawczak, Michael] [Nürnberg, Peter] [Schreiber, Stefan] | 2007 | Journal Article | ||
| Tenofovir resistance and resensitization In: Antimicrobial Agents and Chemotherapy [47], 3478-3484 | [Wolf, Katharina] [Walter, Hauke] Beerenwinkel, Niko [Keulen, Wilco] [Kaiser, Rolf] [Hoffmann, Daniel] Lengauer, Thomas [Selbig, Joachim] [Vandamme, Anne-Mieke] [Korn, Klaus] [Schmidt, Barbara] | | 2003 | Journal Article | |
| The EuResist approach for predicting response to anti HIV-1 therapy In: Reviews in Antiviral Therapy, 107 | Altmann, Andre [Rosen-Zvi, Michal] [Prosperi, Mattia] [Aharoni, Ehud] [Neuvirth, Hani] [Schülter, Eugen] Büch, Joachim [Peres, Yardena] [Incardona, Incardona] [Sönnerborg, Anders] [Kaiser, Rolf] [Zazzi, Maurizio] Lengauer, Thomas | 2008 | Poster | ||
| The formation of a β-Peptide/DPC-micelle complex studied by MD simulations | Antes, Iris [Klein, Michael L.] | | 2001 | Miscellaneous | |
| The Helmholtz Network for Bioinformatics: an integrative web portal for bioinformatics resources In: Bioinformatics [20], 268-270 | [Crass, T.] Antes, Iris [Basekow, R.] [Bork, P.] Buning, Christian [Christensen, M.] [Claußen, H.] [Ebeling, C.] [Ernst,P.] [Gailus-Durner, V.] [Glatting, K.-H.] [Gohla, R.] [Gößling, F.] [Grote, K.] [Heidtke, K.] [Herrmann, A.] [O Keefe, S.] [Kießlich, O.] [Kolibal, S.] [Korbel, J.O.] Lengauer, Thomas [Liebich, I.] [van der Linden, M.] [Luz, H.] [Meissner, K.] [von Mering, C.] [Mevissen, T.] [Mewes, H.-W.] [Michael, H.] [Mokrejs, M.] [Müller, T.] [Pospisil, H.] [Rarey, Matthias] [Reich, J.G.] [Schneider, R.] [Schomburg, D.] [Schulze-Kremer, S.] [Schwarzer, K.] Sommer, Ingolf [Springstubbe, S.] [Suhai, S.] [Thoppae, G.] [Vingron, M.] [Warfsmann, J.] [Werner, T.] [Wetzler, D.] [Wingender, E.] [Zimmer, Ralf] | 2004 | Journal Article | ||
| The HIN domain of IFI-200 proteins consists of two OB folds In: Biochemical and Biophysical Research Communications [327], 679-687 | Albrecht, Mario [Choubey, Divaker] Lengauer, Thomas | | 2005 | Journal Article | |
| The human genomic melting map In: PLoS Computational Biology [3], e93 | [Liu, Fang] [Tostesen, Eivind] [Sundet, Jostein K.] [Jenssen, Tor-Kristian] Bock, Christoph [Jerstad, Geir Ivar] [Thilly, William G.] [Hovig, Eivind] | 2007 | Journal Article | |
| The Impact of Alternative Splicing on Protein Interaction Networks Eberhard Karls Universität Tübingen | Emig, Dorothea | | 2007 | Thesis - other | |
| The implications of alternative splicing in the ENCODE protein complement In: Proceedings of the National Academy of Sciences [104], 5495-5500 | [Tress, Michael L.] [Martelli, Pier L.] [Frankish, Adam] [Reeves, Gabrielle A.] [Wesselink, Jan J.] [Yeats, Corin] [Ólason, Páll Í.] Albrecht, Mario [Hegyi, Hedi] [Giorgetti, Alejandro] [Raimondo, Domenico] [Lagarde, Julien] [Laskowski, Roman A.] [López, Gonzalo] [Sadowski, Michael I.] [Watson, James D.] [Fariselli, Piero] [Rossi, Ivan] [Nagy, Alinda] [Kai, Wang] [Størling, Zenia] [Orsini, Massimiliano] Assenov, Yassen Blankenburg, Hagen Huthmacher, Carola Ramírez, Fidel Schlicker, Andreas [Denoued, France] [Jones, Phil] [Kerrien, Samuel] [Orchard, Sandra] [Antonarakis, Stylianos E.] [Reymond, Alexandre] [Birney, Ewan] [Brunak, Søren] [Casadio, Rita] [Guigo, Roderic] [Harrow, Jennifer] [Hermjakob, Henning] [Jones, David T.] Lengauer, Thomas [Orengo, Christine A.] [Patthy, László] [Thornton, Janet M.] [Tramontano, Anna] [Valencia, Alfonso] | 2007 | Journal Article | |
| The role of genomics in tracking the evolution of influenza A virus In: PLoS Pathog [5], e1000566 | McHardy, Alice C. Adams, Ben | | 2009 | Electronic Journal Article | |
| The unbinding of ATP from F1-ATPase In: Biophysical Journal [85], 695-706 | Antes, Iris [Wang, Hongyun] [Chandler, David] [Oster, George] | 2003 | Journal Article | ||
| Theoretical and Experimental Evaluation of a CYP106A2 Low Homology Model and Production of Mutants with Changed Activity and Selectivity of Hydroxylation In: ChemBioChem [9], 1439-1449 | [Lisurek, Michael] [Simgen, Birgit] Antes, Iris [Bernhardt, Rita] | | 2008 | Journal Article | |
| Tissue-specific proteins and functional implications In: Journal of Proteome Research [10], 1893-1903 | Emig, Dorothea Albrecht, Mario | 2011 | Journal Article | ||
| Topological analysis and interactive visualization of biological networks and protein structures In: Nature Protocols [7], 670-685 | Doncheva, Nadezhda T Assenov, Yassen [Domingues, Francisco S.] Albrecht, Mario | | 2012 | Journal Article | |
| Topological Analysis of Biological Networks Universität des Saarlandes | Assenov, Yassen | 2006 | Thesis - Masters thesis | ||
| Towards cellular function through metabolite screening In: Proceedings of the 3rd Annual Conference on Metabolic Profiling: Pathways in Discovery, 7 | Talwar, Priti Lengauer, Thomas [Wittmann, Christoph] [Mangadu, Vidya] [Heinzle, Elmar] | | 2003 | Proceedings Article | |
| Towards Comparative Epigenomics: A Pilot Study on DNA Methylation of CpG Islands on Human Chromosome 21 Universität des Saarlandes | Feuerbach, Lars | 2007 | Thesis - Masters thesis | |
| Towards Comparative Epigenomics: A Software Toolkit For Cross-Species Epigenome Data Analysis In: Abstracts of the 2nd MC-GARD Meeting, 230 | Feuerbach, Lars Christopher, Bock Halachev, Konstantin Büch, Joachim Lengauer, Thomas | [Meijer, Gerrit] [Ried, Thomas] [Giaretti, Walter] [Hamilton, Peter] | 2008 | Electronic Proceedings Article | |
| Towards computational analysis of metabolic profiling data for protein function prediction. In: Proceedings of the Yeast Systems Biology, 6th International Conference on Systems Biology (ICSB 2005), 1 | Talwar, Priti Lengauer, Thomas Rahnenführer, Jörg [Heinzle, Elmar] [Velagapudi, VR] [Wittmann, Christoph] | 2005 | Poster | ||
| Towards optimal alignment of protein structure distance matrices In: Bioinformatics [26], 2273-2280 | [Wohlers, Inken] Domingues, Francisco S. [Klau, Gunnar W.] | | 2010 | Journal Article | |
| Towards the identification of cancer subtypes by integrative clustering of molecular data Universität des Saarlandes | Speicher, Nora | 2012 | Thesis - Masters thesis | ||
| Transcomplementation, but not physical association of the CC-NB-ARC and LRR domains of tomato R protein Mi-1.2 is altered by mutations in the ARC2 subdomain In: Molecular Plant [1], 401-410 | [Van Ooijen, Gerben] Mayr, Gabriele Albrecht, Mario [Cornelissen, Ben J. C.] [Takken, Frank L. W.] | | 2008 | Journal Article | |
| Tree models for the evolution of drug resistance In: XII International HIV Drug resistance Workshop, S107-S107 | Beerenwinkel, Niko [Kaiser, Rolf] Rahnenführer, Jörg [Däumer, Martin] [Hoffmann, Daniel] [Selbig, Joachim] Lengauer, Thomas | [Boucher, Charles] [Mellors, John] [Larder, Brendan] [Richman, Douglas] | 2003 | Proceedings Article | |
| Truncation mutations in ABCA1 suppress normal upregulation of full-length ABCA1 by 9-cis-retinoic acid and 22-R-hydroxycholesterol In: Journal of Lipid Research [43], 1939-1949 | [Wellington, Cheryl L.] [Yang, Yu-Zhou] [Zhou, Stephen] [Clee, Susanne M.] [Tan, Bing] [Hirano, Kenichi] [Zwarts, K.Y.] [Kwok, Anita] [Gelfer, Allison] [Marcil, Michel] [Newman, Scott] Roomp, Kirsten [Singaraja, Roshni] [Collins, Jennifer A.] [Zhang, Lin-Hua] [Groen, Albert K.] [Hovingh, Kees] [Brownlie, Alison] [Tafuri, Sherrie] [Genest, Jacques Jr] [Kastelein, J.J.P.] [Hayden, Michael R.] | | 2002 | Journal Article | |
| Tutorial Cytoscape In: Bioinformática: Aplicaciones a la genómica y proteómica, 73-98 | Ramirez, Fidel | [Gomez Merino, Fernando Carlos] [Silva Rojas, Hilda Victoria] [Pérez Rodríguez, Paulino] | 2010 | Part of a Book | |
| Unsupervised dissection of cancer types based on genomic, epigenomic and transciptomic features Universität des Saarlandes | Junge, Alexander | | 2011 | Thesis - Bachelor thesis | |
| Unsupervised technique for robust target separation and analysis of DNA microarray spots through adaptive pixel clustering In: Bioinformatics [18], 747-756 | Rahnenführer, Jörg [Bozinov, Daniel] | 2002 | Journal Article | ||
| Update on the domain architectures of NLRs and R proteins In: Biochemical and Biophysical Research Communications [339], 459-462 | Albrecht, Mario [Takken, Frank L. W.] | | 2006 | Journal Article | |
| Using copy number variation fpr predicting susceptibility to glioblastoma Universität des Saarlandes | Dörr, Barbara | 2010 | Thesis - Bachelor thesis | ||
| Using multidimensional Scaling for visualizing similarities of proteins Universität des Saarlandes | Weimann, Aaron | | 2009 | Thesis - Bachelor thesis | |
| Using Shape Retrieval Techniques for Identifying Similar Protein Binding Sites Universität des Saarlandes | Müller, Oliver | 2007 | Thesis - Masters thesis | ||
| V3 loop sequence space analysis suggests different evolutionary patterns of CCR5- and CXCR4-tropic HIV. In: PLoS One [4], e7387:1-e.7387:14 | Bozek, Kasia Thielen, Alexander Sierra, Saleta [Kaiser, Rolf] Lengauer, Thomas | | 2009 | Electronic Journal Article | |
| Validation of geno2pheno and THEO on a large independent clinical dataset In: Proceedings of the 5th European HIV Drug Resistance Workshop, - | Altmann, Andre [Däumer, Martin] Sing, Tobias [Beerenwinkel, Niko] [Walter, Hauke] [Kaiser, Rolf] Lengauer, Thomas | 2007 | Poster | ||
| Variants in a novel epidermal collagen gene (COL29A1) are associated with atopic dermatitis In: PLoS Biology [5], e242.1952-1961 | [Söderhäll, Cilla] [Marenholz, Ingo] [Kerscher, Tamara] [Rüschendorf, Franz] [Esparza-Gordillo, Jorge] [Worm, Margitta] [Gruber, Christoph] Mayr, Gabriele Albrecht, Mario [Rohde, Klaus] [Schulz, Herbert] [Wahn, Ulrich] [Hubner, Norbert] [Lee, Young-Ae] | | 2007 | Journal Article |
| Viral Bioinformatics In: Modern Genome Annotation - The BioSapiens Network, 429-452 | Adams, Ben McHardy, Alice [Lundegaard, C.] Lengauer, Thomas | Frishman, Dimitrij Valencia, Alfonso | 2009 | Part of a Book | |
| Virtual screening for guest molecules of a biosensor In: Biosensors 2006: The ninth world congress on biosensors, O66 | Steffen, Andreas Kämper, Andreas Lengauer, Thomas | [Turner, Anthony P. F.] | 2006 | Proceedings Article | |
| Virtual Screening for novel Urease Inhibitors In: Proceedings of the International Workshop on New Approaches in Drug Design & Discovery, 39 | Kämper, Andreas Lengauer, Thomas | 2003 | Poster | ||
| Visualizing domain interaction networks and the impact of alternative splicing events In: Proceedings of the 5th International Conference on BioMedical Visualization (MediVis): Information Visualization in Medical and Biomedical Informatics, 36-43 | Emig, Dorothea [Klein, Karsten] [Kunert, Anne] [Mutzel, Petra] Albrecht, Mario | | 2008 | Proceedings Article | |
| Web-based analysis of (epi-) genome data using EpiGRAPH and Galaxy. In: Genetic Variation : Methods and Protocols, 275-296 In: Methods of Molecular Biology [628], 275-296 | Bock, Christoph [Von Kuster, Greg] Halachev, Konstantin [Taylor, James] [Nekrutenko, Anton] Lengauer, Thomas | [Barnes, Michael R.] [Breen, Gerome] | 2010 | Part of a Book | |
| Web Implementation of the HBV Dual Infection Model Universität des Saarlandes | Döring, Matthias | | 2011 | Thesis - Bachelor thesis | |
| Why Do Hubs in the Yeast Protein Interaction Network Tend To Be Essential: Reexamining the Connection between the Network Topology and Essentiality In: PLoS Computational Biology [4], e1000140 | Zotenko, Elena Mestre, Julian [O'Leary, Dianne] [Przytycka, Teresa] | 2008 | Journal Article | ||
| WILMA-automated annotation of protein sequences In: Bioinformatics [20], 127-128 | [Prlic, Andreas] Domingues, Francisco S. [Lackner, Peter] [Sippl, Manfred J.] | | 2004 | Journal Article | |
| Yamada Analyzer - A tool for fast calculation of genomic attributes Universität des Saarlandes | Jung, Holger | 2006 | Thesis - Bachelor thesis |