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MPI-INF D3 Publications, generated: 4:21, 25 August 2019

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Your search returned the following 34 documents:

  1. Alessandra Zanon, Aleksandar Rakovic, Hagen Blankenburg, Nadezhda T. Doncheva, Christine Schwienbacher, Alice Serafin, Adrian Alexa, Christian X. Weichenberger, Mario Albrecht, Christine Klein, Andrew A. Hicks, Peter P. Pramstaller, Francisco S. Domingues, and Irene Pichler
    Profiling of parkin-binding partners using tandem affinity purification
    PLoS ONE 8 (11): 1-17, 2013
  2. Thomas Lengauer, Mario Albrecht, and Francisco S. Domingues
    Computational Biology
    In: Encyclopedia of Molecular Cell Biology and Molecular Medicine, 2012, 1-71
  3. Christoph Welsch, Sabine Schweizer, Testsuro Shimakami, Francisco S. Domingues, Seungtaek Kim, Stanley, M. Lemon, and Iris Antes
    Ketoamide Resistance and Hepatitis C Virus Fitness in Val55 Variants of the NS3 Serine Protease
    Antimicrobial Agents and Chemotherapy 56 (4): 1907-1915, 2012
  4. Christoph Welsch, Tetsuro Shimakami, Christoph Hartmann, Yan Yang, Francisco S. Domingues, Thomas Lengauer, Stefan Zeuzem, and Stanley M. Lemon
    Peptidomimetic Escape Mechanisms Arise via Genetic Diversity in the Ligand-Binding Site of the Hepatitis C Virus NS3/4A Serine Protease
    Gastroenterology 142 (3): 654-663, 2012
  5. Nadezhda T Doncheva, Yassen Assenov, Francisco S. Domingues, and Mario Albrecht
    Topological analysis and interactive visualization of biological networks and protein structures
    Nature Protocols 7 (4): 670-685, 2012
  6. Nadezhda T. Doncheva, Karsten Klein, Francisco S. Domingues, and Mario Albrecht
    Analyzing and visualizing residue networks of protein structures
    Trends in Biochemical Sciences 36 (4): 179-182, 2011
  7. Kirsten Roomp and Francisco S. Domingues
    Predicting interactions between T cell receptors and MHC-peptide complexes
    Molecular Immunology 48 (4): 553-562, 2011
  8. Inken Wohlers, Francisco S. Domingues, and Gunnar W. Klau
    Towards optimal alignment of protein structure distance matrices
    Bioinformatics 26 (18): 2273-2280, 2010
  9. Simone Susser, Christoph Welsch, Yalan Wang, Markus Zettler, Francisco S. Domingues, Ursula Karey, Eric Hughes, Robert Ralston, Xiao Tong, Eva Herrmann, Stefan Zeuzem, and Christoph Sarrazin
    Characterization of resistance to the protease inhibitor boceprevir in hepatitis C virus-infected patients.
    Hepatology 50 (6): 1709-1718, 2009
  10. Ken Kono, Kasia Bozek, Francisco S. Domingues, Tatsuo Shioda, and Emi E. Nakayama
    Impact of a single amino acid in the variable region 2 of the Old World monkey TRIM5alpha SPRY (B30.2) domain on anti-human immunodeficiency virus type 2 activity
    Virology 388 (1): 160-168, 2009
  11. Hongbo Zhu, Ingolf Sommer, Thomas Lengauer, and Francisco S. Domingues
    Alignment of Non-Covalent Interactions at Protein-Protein Interfaces
    PLoS ONE 3 (4): e1926 p., 2008
    [PDF: Download: Zhu2008.pdf]
  12. Nils Weinhold, Oliver Sander, Francisco S. Domingues, Thomas Lengauer, and Ingolf Sommer
    Local function conservation in sequence and structure space
    PLoS Computational Biology 4: e1000105 p., 2008
    [PDF: Download: Weinhold2008.pdf]
  13. Christoph Welsch, Francisco S. Domingues, Simone Susser, Iris Antes, Christoph Hartmann, Gabriele Mayr, Andreas Schlicker, Christoph Sarrazin, Mario Albrecht, Stefan Zeuzem, and Thomas Lengauer
    Molecular basis of telaprevir resistance due to V36 and T54 mutations in the NS3-4A protease of HCV
    Genome Biology 9 (1): R16 p., 2008
    [PDF: Download: Welsch2008.pdf]
  14. Andre Franke, Tobias Balschun, Tom H. Karlsen, Jurgita Sventoraityte, Susanna Nikolaus, Gabriele Mayr, Francisco S. Domingues, Mario Albrecht, Michael Nothnagel, David Ellinghaus, Christian Sina, Clive M. Onnie, Rinse K. Weersma, Pieter C. F. Stokkers, Cisca Wijmenga, Maria Gazouli, David Strachan, Wendy L. McArdle, Séverine Vermeire, Paul Rutgeers, Philip Rosenstiel, Michael Krawczak, Morten H. Vatn, the IBSEN study group, Christopher G. Mathew, and Stefan Schreiber
    Sequence variants in IL10, ARPC2, and multiple other loci contribute to ulcerative colitis
    Nature Genetics 40 (11): 1319-1323, 2008
  15. Oliver Sander, Francisco S. Domingues, Hongbo Zhu, Thomas Lengauer, and Ingolf Sommer
    Structural descriptors of protein-protein binding sites
    In: Proceedings of 6th Asia-Pacific Bioinformatics Conference, Kyoto, Japan, 2008, 79-88
  16. James D. Watson, Janet M. Thornton, Michael L. Tress, Gonzalo Lopez, Alfonso Valencia, Oliver Redfern, Christine A. Orengo, Ingolf Sommer, and Francisco S. Domingues
    Structure to function
    In: Modern Genome Annotation, 2008, 239-262
  17. Gabriele Mayr, Francisco S. Domingues, and Peter Lackner
    Comparative Analysis of Protein Structure Alignments
    BMC Structural Biology 7: 1 p., 2007
    [PDF: Download: Mayr.pdf]
  18. Francisco S. Domingues, Jörg Rahnenführer, and Thomas Lengauer
    Conformational analysis of alternative protein structures
    Bioinformatics 23 (23): 3131-3138, 2007
  19. Francisco S. Domingues and Thomas Lengauer
    Inferring Protein Function from Protein Structure
    In: Bioinformatics - From Genomes to Therapies 3. The Holy Grail: Molecular Function, 2007, 1211-1252
  20. Ingolf Sommer, Oliver Müller, Francisco S. Domingues, Oliver Sander, Joachim Weickert, and Thomas Lengauer
    Moment invariants as shape recognition technique for comparing protein binding sites
    Bioinformatics 23 (23): 3139-3146, 2007
  21. Tobias Sing, Andrew J. Low, Niko Beerenwinkel, Oliver Sander, Peter K. Cheung, Francisco S. Domingues, Joachim Büch, Martin Däumer, Rolf Kaiser, Thomas Lengauer, and P. Richard Harrigan
    Predicting HIV coreceptor usage on the basis of genetic and clinical covariates
    Antiviral Therapy 12 (7): 1097-1106, 2007
  22. Oliver Sander, Tobias Sing, Ingolf Sommer, Andrew J. Low, Peter K. Cheung, P. Richard Harrigan, Thomas Lengauer, and Francisco S. Domingues
    Structural Descriptors of gp120 V3 Loop for the Prediction of HIV-1 Coreceptor Usage
    PLoS Computational Biology 3 (3): 555-564, 2007
    [PDF: Download: Sander.pdf]
  23. Andreas Schlicker, Jörg Rahnenführer, Mario Albrecht, Thomas Lengauer, and Francisco S. Domingues
    GOTax: investigating biological processes and biochemical activities along the taxonomic tree
    Genome Biology 8 (3): R33.1-10, 2007
    [PDF: Download: Schlicker2007.pdf]
  24. Andreas Schlicker, Francisco S. Domingues, Jörg Rahnenführer, and Thomas Lengauer
    A new measure for functional similarity of gene products based on Gene Ontology
    BMC Bioinformatics 7: 1-16, 2006
    [PDF: Download: Schlicker_BMCBioinformatics_2006.pdf]
  25. Hongbo Zhu, Francisco S. Domingues, Ingolf Sommer, and Thomas Lengauer
    NOXclass: prediction of protein-protein interaction types
    BMC Bioinformatics 7 (27): 1-15, 2006
  26. Hongbo Zhu, Francisco S. Domingues, Ingolf Sommer, and Thomas Lengauer
    Analysis and prediction of protein-protein interaction types
    In: 4th European Conference on Computational Biology (ECCB05), Madrid, Spain, 2005, 1 p.
  27. Francisco S. Domingues, Jörg Rahnenführer, and Thomas Lengauer
    Automated clustering of ensembles of alternative models in protein structure databases
    Protein Engineering Design and Selection 17 (6): 537-543, 2004
  28. Jörg Rahnenführer, Francisco S. Domingues, Jochen Maydt, and Thomas Lengauer
    Calculating the statistical significance of changes in pathway activity from gene expression data
    Statistical Applications in Genetics and Molecular Biology 3 (1): Article 16 p., 2004
  29. Ingolf Sommer, Jörg Rahnenführer, Francisco S. Domingues, Ulrik de Lichtenberg, and Thomas Lengauer
    Predicting Protein Structure Classes from Function Predictions
    Bioinformatics 20 (5): 770-776, 2004
  30. Francisco S. Domingues, Thomas Lengauer, and Ingolf Sommer
    Protein Structure Prediction and Databases
    In: Nature Encyclopedia of the Human Genome, 2004, 864-867
  31. Andreas Prlic, Francisco S. Domingues, Peter Lackner, and Manfred J. Sippl
    WILMA-automated annotation of protein sequences
    Bioinformatics 20 (4): 127-128, 2004
  32. Mario Albrecht, Francisco S. Domingues, Stefan Schreiber, and Thomas Lengauer
    Identification of mammalian orthologs associates PYPAF5 with distinct functional roles
    FEBS Letters 538 (1-3): 173-177, 2003
  33. Francisco S. Domingues and Thomas Lengauer
    Protein Function from Sequence and Structure Data
    Applied Bioinformatics 2 (1): 3-12, 2003
  34. Mario Albrecht, Francisco S. Domingues, Stefan Schreiber, and Thomas Lengauer
    Structural localization of disease-associated sequence variations in the NACHT and LRR domains of PYPAF1 and NOD2
    FEBS Letters 554 (3): 520-528, 2003