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MPI-INF D3 Publications, generated: 14:54, 21 July 2019

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Your search returned the following 47 documents:

  1. Juan Sandoval, Jesus Mendez-Gonzales, Ernest Nadal, Guoan Chen, F. Javier Carmona, Sergi Sayols, Sebastian Moran, Holger Heyn, Miguel Vizoso, Antonio Gomez, Montse Sanchez-Cespedes, Yassen Assenov, Fabian Müller, Christoph Bock, Miquel Taron, Josefina Mora, Lucia A. Muscarella, Triantafillos Liloglou, Michael Davies, Marina Pollan, Maria J. Pajares, Wenceslao Torre, Luis M. Montuenga, Elisabeth Brambilla, John K. Field, Luca Roz, Marco Lo Iacono, Giorgio V. Scagliotti, Rafael Rosell, David G. Beer, and Manel Esteller
    A Prognostic DNA Methylation Signature for Stage I Non-Small-Cell Lung Cancer
    Journal of Clinical Oncology 31 (32): 4140-4147, 2013
  2. F. Simmer, A.B. Brinkmann, Yassen Assenov, F. Matarese, A. Kaan, Thomas Lengauer, Christoph Bock, V. Colantuoni, L. Altucci, and H.G. Stunnenberg
    Comparative genome-wide DNA methylation analysis of colorectal tumor and matched human tissue
    Epigenetics 7 (12): 1355-1367, 2013
  3. Konstantin Halachev, H. Bast, Thomas Lengauer, and Christoph Bock
    Interactive exploration of large genome and epigenome datasets in real time
    Genome Biology 13 (10), 2013
  4. Vincenzo Calvanese, Agustín F. Fernandez, Rocío G. Urdinguio, Beatriz Suarez-Álvarez, Cristina Mangas, Vicente Pérez-García, Clara Bueno, Rosa Montes, Verónica Ramos-Mejía, Pablo Martínez-Camblor, Cecilia Ferrero, Yassen Assenov, Christoph Bock, Pablo Menendez, Ana Clara Carrera, Carlos Lopez-Larrea, and Mario F. Fraga
    A promoter DNA demethylation landscape of human hematopoietic differentiation
    Nucleic Acids Research 40 (1): 116-131, 2012
  5. Agustin F. Fernandez, Yassen Assenov, Jose Ignacio Martin-Subero, Balazs Balint, Reiner Siebert, Hiroaki Taniguchi, Hiroyuki Yamamoto, Manuel Hidalgo, Aik-Choon Tan, Oliver Galm, Isidre Ferrer, Montse Sanchez-Cespedes, Alberto Villanueva, Javier Carmona, Jose V. Sanchez-Mut, Maria Berdasco, Victor Moreno, Gabriel Capella, David Monk, Esteban Ballestar, Santiago Ropero, Ramon Martinez, Marta Sanchez-Carbayo, Felipe Prosper, Xabier Agirre, Mario F. Fraga, Osvaldo Gran˜a, Luis Perez-Jurado, Jaume Mora, Susana Puig, Jaime Prat, Lina Badimon, Annibale A. Puca, Stephen J. Meltzer, Thomas Lengauer, John Bridgewater, Christoph Bock, and Manel Esteller
    A DNA methylation fingerprint of 1628 human samples
    Genome Research 22 (2): 407-419, 2012. Note: PMID: 21613409
  6. Christoph Bock
    Analysing and interpreting DNA methylation data
    Nature Reviews Genetics 13 (10): 705-719, 2012
  7. Lars Feuerbach, Konstantin Halachev, Yassen Assenov, Fabian Mueller, Christoph Bock, and Thomas Lengauer
    Analyzing epigenome data in context of genome evolution and human diseases
    In: Evolutionary Genomics : Statistical and Computational Methods, Volume 2, 2012, 431-467
  8. Femke Simmer, Arie B. Brinkman, Yassen Assenov, Filomena Matarese, Anita Kaan, Lina Sabatino, Alberto Villanueva, Dori Huertas, Manel Esteller, Thomas Lengauer, Christoph Bock, Vittorio Colantuoni, Lucia Altucci, and Henk G. Stunnenberg
    Comparative genome-wide DNA methylation analysis of colorectal tumor and matched normal tissues
    Epigenetics 7 (12): 1355-1367, 2012
  9. K. Halachev, H. Bast, F. Albrecht, Thomas Lengauer, and Christoph Bock
    EpiExplorer: live exploration and global analysis of large epigenomic datasets
    Genome Biology 13: R96,1-R96,14, 2012
  10. Konstantin Halachev, Hannah Bast, Felipe Albrecht, Thomas Lengauer, and Christoph Bock
    EpiExplorer: live exploration and global analysis of large epigenomic datasets
    Genome Biology 13 (10): R96,1-R96,14, 2012

  11. Christoph Bock and Thomas Lengauer
    Epigenom-Karten erstellen und nutzen
    BIOspektrum 18 (2): 138-141, 2012
  12. Shila Mekhubad, Christoph Bock, A. Sophie de Boer, Evangelos Kiskinis, Alexander Meissner, and Kevin Eggan
    Erosion of dosage compensation impacts human iPSC disease modeling
    Cell Stem Cell 10 (5): 595-609, 2012
  13. Thomas Lengauer and Christoph Bock
    Managing drug resistance in cancer: lessons from HIV therapy
    Nature Reviews Cancer 12 (7): 494-501, 2012
  14. Christoph Bock and Thomas Lengauer
    Managing drug resistance in cancer: lessons from HIV therapy
    Nature Reviews Cancer 12 (7): 494-501, 2012
  15. Yuanxin Xi, Christoph Bock, Fabian Müller, Deqiang Sun, Alexander Meissner, and Wei Li
    RRBSMAP: a fast, accurate and user-friendly alignment tool for reduced representation bisulfite sequencing
    Bioinformatics 28 (3): 430-432, 2012
  16. David Adams, Lucia Altucci, Stylianos E Antonarakis, Juan Ballesteros, Stephan Beck, Adrian Bird, Christoph Bock, Bernhard Boehm, Elias Campo, Andrea Caricasole, Fredrik Dahl, Emmanouil T Dermitzakis, Tariq Enver, Manel Esteller, Xavier Estivill, Anne Ferguson-Smith, Jude Fitzgibbon, Paul Flicek, Claudia Giehl, Thomas Graf, Frank Grosveld, Roderic Guigó, Ivo Gut, Kristian Helin, Jonas Jarvius, Ralf Küppers, Hans Lehrach, Thomas Lengauer, Åke Lernmark, David Leslie, Markus Loeffler, Elizabeth Macintyre, Antonello Mai, Joost H A Martens, Saverio Minucci, Willem H Ouwehand, Pier Giuseppe Pelicci, Hèléne Pendeville, Bo Porse, Vardhman Rakyan, Wolf Reik, Martin Schrappe, Dirk Schübeler, Martin Seifert, Reiner Siebert, David Simmons, Nicole Soranzo, Salvatore Spicuglia, Michael Stratton, Hendrik G Stunnenberg, Amos Tanay, David Torrents, Alfonso Valencia, Edo Vellenga, Martin Vingron, Jörn Walter, and Spike Willcocks
    BLUEPRINT to decode the epigenetic signature written in blood
    Nature Biotechnology 30 (3): 224-226, 2012
  17. Thomas Mikeska, Christoph Bock, Hongdo Do, and Alexander Dobrovic
    DNA methylation biomarkers in cancer: Progress towards clinical implementation
    Expert Reviews of Molecular Diagnostics 12 (5): 473-487, 2012
  18. Pavlo Lutsik, Lars Feuerbach, Julia Arand, Thomas Lengauer, Jörn Walter, and Christoph Bock
    BiQ Analyzer HT: locus-specific analysis of DNA methylation by high-throughput bisulfite sequencing
    Nucleic Acids Research 39 (Suppl. 2): W551-W556, 2011
  19. Michael J. Ziller, Fabian Müller, Jing Liao, Yingying Zhang, Hongcang Gu, Christoph Bock, Patrick Boyle, Charles B. Epstein, Bradley E. Bernstein, Thomas Lengauer, Andreas Gnirke, and Alexander Meissner
    Genomic distribution and inter-sample variation of non-CpG methylation across human cell types
    PLoS Genetics 17 (12): e1002389,1-e1002389,15, 2011
  20. Sima J. Zacharek, Christine M. Fillmore, Allison N. Lau, David W. Gludish, alan Chou, Joshua W. K. Ho, Raffaella Zamponi, Roi Gazit, Christoph Bock, Natalie Jäger, Zachary D. Smith, Tae-min Kim, Arven H. Saunders, Janice Wong, Joo-Hyeon Lee, Rebecca R. Roach, Derrick J. Rossi, Alex Meissner, Alexander A. Gimelbrant, Peter J. Park, and Carla F. Kim
    Lung stem cell self-renewal relies on BMI1-dependent control of expression at imprinted loci
    Cell Stem Cell 9 (3): 272-280, 2011
  21. Hongcang Gu, Zachary D. Smith, Christoph Bock, Patrick Boyle, Andreas Gnirke, and Alexander Meissner
    Preparation of reduced representation bisulfite sequencing libraries for genome-scale DNA methylation profiling
    Nature Protocols 6 (4): 468-481, 2011
  22. Christoph Bock, Evangelos Kiskinis, Griet Verstappen, Hongcang Gu, Gabriella Boulting, Zachary D. Smith, Michael Ziller, Gist F. Croft, MacKenzie W. Amoroso, Derek H. Oakley, Andreas Gnirke, Kevin Eggan, and Alexander Meissner
    Reference Maps of Human ES and iPS Cell Variation Enable High-Throughput Characterization of Pluripotent Cell Lines
    Cell 144 (3): 439-452, 2011
  23. Yuanxin Xi, Christoph Bock, Fabian Müller, Deqiang Sun, Alexander Meissner, and Wei Li
    RRBSMAP: A Fast, Accurate and User-friendly Alignment Tool for Reduced Representation Bisulfite Sequencing
    Bioinformatics 28 (3): 430-432, 2011
  24. R. Alan Harris, Ting Wang, Cristian Coarfa, Raman P. Nagarajan, Chibo Hong, Sara L. Downey, Brett E. Johnson, Shaun D. Fouse, Allen Delaney, Yongjun Zhao, Adam Olshen, Tracy Ballinger, Xin Zhou, Kevin J. Forsberg, Junchen Gu, Lorigail Echipare, Heriette O'Geen, Ryan Lister, Mattia Pelizzola, Yuanxin Xi, Charles B. Epstein, Bradley E. Bernstein, R. David Hawkins, Bing Ren, Wen-Yu Chung, Hongcang Gu, Christoph Bock, Andreas Gnirke, Michael Q. Zhang, David Haussler, Joseph R. Ecker, Wei Li, Peggy J. Farnham, Robert a. Waterland, Alexander Meissner, Marco A. Marra, Martin Hirst, Aleksandar Milosavljevic, and Joseph F. Costello
    Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications
    Nature Biotechnology 28 (10): 1097-1105, 2010
  25. Hongcang Gu, Christoph Bock, Tarjei S. Mikkelsen, Natalie Jäger, Zachary D. Smith, Eleni Tomazou, Andreas Gnirke, Eric S. Lander, and Alexander Meissner
    Genome-scale DNA methylation mapping of clinical samples at single-nucleotide resolution
    Nature Methods 7 (2): 133-136, 2010
    [PDF: Download: Manuscript - DNA methylation mapping of clinical samples.pdf]
  26. Christoph Bock, Eleni M. Tomazou, Arie B. Brinkman, Fabian Müller, Femke Simmer, Hongcang Gu, Natalie Jäger, Andreas Gnirke, Hendrik G. Stunnenberg, and Alexander Meissner
    Quantitative comparison of genome-wide DNA methylation mapping technologies
    Nature Biotechnology 28 (10): 1106-1114, 2010
    [PDF: Download: Genome-wide mapping of DNA methylation - a quantitative technology comparison.pdf]
  27. Christoph Bock, Greg Von Kuster, Konstantin Halachev, James Taylor, Anton Nekrutenko, and Thomas Lengauer
    Web-based analysis of (epi-) genome data using EpiGRAPH and Galaxy.
    In: Genetic Variation : Methods and Protocols, 2010, 275-296
  28. Lars Feuerbach, Konstantin Halachev, Thomas Lengauer, and Christoph Bock
    An exhaustive methode for CpG island annotation
    In: Special Issue: Abstracts of the 3rd MC-GARD Meeting, Pollock Halls of Residence, 18 Holyrood Park Road, Edinburgh, Scotland, 2009, 146-146, paper no. P77.
  29. Yingying Zhang, Christian Rohde, Sascha Tierling, Tomasz P. Jurkowski, Christoph Bock, Diana Santacruz, Sergey Ragozin, Richard Reinhardt, Marco Groth, Jörn Walter, and Albert Jeltsch
    DNA methylation analysis of chromosome 21 gene promoters at single base pair and single allele resolution
    PLoS Genetics 5 (3): e1000438:1-e1000438:15, 2009
    [PDF: Download: DNA Methylation Analysis of Chromosome 21 Gene Promoters.pdf]
  30. Christoph Bock
    Epigenetic biomarker development
    Epigenomics 1 (1): 99-110, 2009
    [PDF: Download: Epigenetic biomarker development - postprint.pdf]
  31. Dirk Moser, Savira Ekawardhani, Robert Kumsta, Haukur Palmason, Christoph Bock, Zoi Athanassiadou, Klaus-Peter Lesch, and Jobst Meyer
    Functional Analysis of a Potassium-Chloride Co-Transporter 3 (SLC12A6) Promoter Polymorphism Leading to an Additional DNA Methylation Site
    Neuropsychopharmacology 34 (2): 458-467, 2009

  32. Peter Schüffler, Thomas Mikeska, Andreas Waha, Thomas Lengauer, and Christoph Bock
    MethMarker: User-friendly design and optimization of gene-specific DNA methylation assays
    Genome Biology 10 (10): R105:1-R105:10, 2009
    [PDF: Download: MethMarker - user-friendly design and optimization of gene-specific DNA methylation assays.pdf]
  33. Christoph Bock, Konstantin Halachev, Joachim Büch, and Thomas Lengauer
    EpiGRAPH: user-friendly software for statistical analysis and prediction of (epi)genomic data
    Genome Biology 10: R14.1-R14.14, 2009
    [PDF: Download: EpiGRAPH - User-friendly software for statistical analysis and prediction of (epi-) genomic data.pdf]
  34. Christoph Bock and Thomas Lengauer
    Computational epigenetics
    Bioinformatics 24 (1): 1-10, 2008
    [PDF: Download: Review on Computational Epigenetics - Advanced Access.pdf]
  35. Christoph Bock
    Computational Epigenetics - Bioinformatic methods for epigenome prediction, DNA methylation mapping and cancer epigenetics
    Doctoral dissertation, Universität des Saarlandes, 2008
  36. Christoph Bock, Jörn Walter, Martina Paulsen, and Thomas Lengauer
    Inter-individual variation of DNA methylation and its implications for large-scale epigenome mapping
    Nucleic Acids Research 36 (10): e55 p., 2008
    [PDF: Download: Bock et al. (2008) Inter-individual variation of DNA methylation and its implications for large-scale epigenome mapping.pdf]
  37. Martin Kircher, Christoph Bock, and Martina Paulsen
    Structural conservation versus functional divergence of maternally expressed microRNAs in the Dlk1/Gtl2 imprinting region
    BMC Genomics 9: 346 p., 2008
    [PDF: Download: Structural conservation versus functional divergence of maternally expressed microRNAs in the Dlk1-Gtl2 imprinting region.pdf]
  38. Christoph Bock
    IVF: stars may have to consider the risk of stolen parenthood
    Nature 454 (7207): 938 p., 2008
  39. Christoph Bock and Thomas Lengauer
    Computational Epigenetics: Bioinformatik für neue Wege in der Krebsforschung
    In: Jahrbuch 2007, 2007, 271-277
    [PDF: Download: Reprint - Computational Epigenetics - Bioinformatik für neue Wege in der Krebsforschung.pdf]
  40. Thomas Mikeska, Christoph Bock, Osman El-Maarri, Anika Hübner, Denise Ehrentraut, Johannes Schramm, Jörg Felsberg, Philip Kahl, Reinhard Büttner, Torsten Pietsch, and Andreas Waha
    Optimization of Quantitative MGMT Promoter Methylation Analysis Using Pyrosequencing and Combined Bisulfite Restriction Analysis
    Journal of Molecular Diagnostics 9 (3): 368-381, 2007

  41. Fang Liu, Eivind Tostesen, Jostein K. Sundet, Tor-Kristian Jenssen, Christoph Bock, Geir Ivar Jerstad, William G. Thilly, and Eivind Hovig
    The human genomic melting map
    PLoS Computational Biology 3 (5): e93 p., 2007
    [PDF: Download: The Human Genomic Melting Map.pdf]
  42. Christoph Bock, Jörn Walter, Martina Paulsen, and Thomas Lengauer
    CpG Island Mapping by Epigenome Prediction
    PLoS Computational Biology 3 (6): 1055-1070, 2007
    [PDF: Download: C. Bock et al. (2007) CpG island mapping by epigenome prediction.pdf] [PDF: Download: BockWalter.pdf]
  43. Christoph Bock, Thomas Lengauer, Sabine Reither, Thomas Mikeska, Martina Paulsen, and Jörn Walter
    BiQ Analyzer: visualization and quality control for DNA methylation data from bisulfite sequencing
    Bioinformatics 21 (21): 4067-4068, 2005

  44. Christoph Bock and Jürgen Hesser
    Analysis and Prediction of Helix Shift Errors in Homology Modeling
    In Silico Biology 6 (1-2): 131-145, 2006

  45. Christoph Bock
    Bioinformatik: Neue Strategien gegen Krebs
    Deutsches Ärzteblatt PRAXiS 103 (36): 10-11, 2006
  46. Christoph Bock, Konstantin Halachev, and Thomas Lengauer
    Bioinformatisches Data Mining erschließt neue Strategien gegen Krebs
    In: Aktuelle Trends in der Softwareforschung, 2006, 91-99
  47. Christoph Bock, Martina Paulsen, Sascha Tierling, Thomas Mikeska, Thomas Lengauer, and Jörn Walter
    CpG Island Methylation in Human Lymphocytes Is Highly Correlated with DNA Sequence, Repeats, and Predicted DNA Structure
    PLoS Genetics 2 (3): 0243-0252, 2006
    [PDF: Download: Bock et al. (2006) - CpG Island Methylation in Human Lymphocytes.pdf]