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MPI-INF D3 Publications, generated: 0:18, 16 October 2019

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Your search returned the following 28 documents:

  1. Agnieszka Smolinska, Anne-Christin Hauschild, Rianne Fijten, Jan Dallinga, Jan Baumbach, and Frederik van Schooten
    Current breathomics – A review on data pre-processing techniques and machine learning in metabolomics breath analysis

  2. Felix Maurer, Anne-Christin Hauschild, Kathrin Eisinger, Jan Baumbach, Arno Mayor, and Jörg Ingo Baumbach
    MIMA - A software for analyte identification in MCC/IMS chromatograms by mapping accompanying GC/MS measurements
    International Journal for Ion Mobility Spectrometry , 2014
  3. Sandrah Eckel, Jan Baumbach, and Anne-Christin Hauschild
    On the importance of statistics in breath analysis - Hope or curse?
    . Note: comment and reply to Journal of Breath Research
  4. Till Schneider, Anne-Christin Hauschild, Joerg Ingo Baumbach, and Jan Baumbach
    An Integrative Clinical Database and Diagnostics Platform for Biomarker Identification and Analysis in Ion Mobility Spectra of Human Exhaled Air
    Journal of Integrative Bioinformatics 10 (2), 2013
  5. Richard Röttger, Prabhav Kalaghatgi, Peng Sun, Siomar de Castro Soares, Vasco Azevedo, Tobias Wittkop, and Jan Baumbach
    Density Parameter Estimation for Finding Clusters of Homologous Proteins - Tracing Actinobacterial Pathogenicity Life Styles
    Bioinformatics 29 (2): 215-222, 2013
  6. Anne-Christin Hauschild, Joerg Ingo Baumbach, and Jan Baumbach
    Paving the Way for Automated Clinical Breath Analysis and Biomarker Detection
    GCB Highlight track

  7. Anne-Christin Hauschild, Dominik Kopczynski, Marianna D'Addario, Joerg Ingo Baumbach, Sven Rahmann, and Jan Baumbach
    Peak Detection Method Evaluation for Ion Mobility Spectrometry by using Machine Learning Approaches
    Metabolites 3 (2): 277-293, 2013
  8. Anne-Christin Hauschild, Till Schneider, Josch Pauling, Kathrin Rupp, Mi Jang, Jörg Ingo Baumbach, and Jan Baumbach
    Computational Methods for Metabolomic Data Analysis of Ion Mobility Spectrometry Data - Reviewing the State of the Art
    Metabolites 2: 733-755, 2012
    [PDF: Download: metabolites-02-00733.pdf]
  9. Josch Pauling, Richard Röttger, Andreas Tauch, Vasco Azevedo, and Jan Baumbach
    CoryneRegNet 6.0 - Updated database content, new analysis methods and novel features focusing on community demands
    Nucleic Acids Research 40 (Database issue): D610-D614, 2012
  10. Richard Röttger, Ulrich Rueckert, Jan Taubert, and Jan Baumbach
    How Little Do We Actually Know? - On the Size of Gene Regulatory Networks.
    IEEE/ACM transactions on computational biology and bioinformatics 9 (5): 1293-1300, 2012
  11. Anne-Christin Hauschild, Jörg Ingo Baumbach, and Jan Baumbach
    Integrated statistical learning of metabolic ion mobility spectrometry profiles for pulmonary disease identification
    Genetics and Molecular Research 11 (3): 2733-2744, 2012

  12. Jan Baumbach
    Integrative computational biology
    Integrative Biology 4 (7): 713-714, 2012
  13. Nicolas Alcaraz, Hande Kucuk, Jochen Weile, Anil Wipat, and Jan Baumbach
    KeyPathwayMiner - Detecting case-specific biological pathways by using expression data
    Internet Mathematics 7 (4): 299-313, 2012
  14. Josch Pauling, Richard Röttger, Andreas Neuner, Heladia Salgado, Julio Collado-Vides, Prabhav Kalaghatgi, Vasco Azevedo, Andreas Tauch, Alfred Pühler, and Jan Baumbach
    On the trail of EHEC/EAEC - unraveling the gene regulatory networks of human pathogenic Escherichia coli bacteria
    Integrative Biology 4: 728-733, 2012
  15. Richard Röttger, Christoph Kreutzer, Thuy Duong Vu, Tobias Wittkop, and Jan Baumbach
    Online Transitivity Clustering of Biological Data with Missing Values
    In: German Conference on Bioinformatics 2012 (GCB 2012), Jena, Germany, 2012, 57-68
  16. Siomar C. Soares, Vinícius A. C. Abreu, Rommel T. J. Ramos, Louise Cerdeira, Artur Silva, Jan Baumbach, Eva Trost, Andreas Tauch, Raphael Hirata, Ana L. Mattos-Guaraldi, Anderson Miyoshi, and Vasco Azevedo
    PIPS: Pathogenicity Island Prediction Software
    PLoS One 7 (2): e30848,1-e30848,10, 2012
  17. Anderson R Santos, Marcos A Santos, Jan Baumbach, John A McCulloch, Guilherme C Oliveira, Artur Silva, Anderson Miyoshi, and Vasco Azevedo
    A singular value decomposition approach for improved taxonomy classification of biological sequences
    BMC Genomics 12 (Suppl. 4): S11,1-S11,15, 2011
  18. Rommel T.J. Ramos, Adriana R. Carneiro, Jan Baumbach, Vasco Azevedo, Maria P.C. Schneider, and Artur Silva
    Analysis of quality raw data of second generation sequencers with Quality Assessment Software
    BMC Research Notes 4 (1): 130,1-130,6, 2011
  19. John H. Morris, Leonard Apeltsin, Aaron M. Newman, Jan Baumbach, Tobias Wittkop, Gang Su, Gary D. Bader, and Thomas E. Ferrin
    clusterMaker: A Multi-algorithm Clustering Plugin for Cytoscape
    BMC Bioinformatics 12 (1): 436,1-436,14, 2011
  20. Tobias Wittkop, Dorothea Emig, Anke Truss, Mario Albrecht, Sebastian Böcker, and Jan Baumbach
    Comprehensive cluster analysis with Transitivity Clustering
    Nature Protocols 6 (3): 285-295, 2011
  21. Jeronimo C. Ruiz, Vivian D'Afonseca, Artur Silva, Amjad Ali, Anne C. Pinto, Anderson R. Santos, Aryanne A. M. C. Rocha, Debora O. Lopes, Fernanda A. Dorella, Luis G. C. Pacheco, Marcilia P. Costa, Meritxell Z. Turk, Nubia Seyffert, Pablo M. R. O. Moraes, Siomar C. Soares, Sintia S. Almeida, Thiago L. P. Castro, Vinicius A. C. Abreu, Eva Trost, Jan Baumbach, Andreas Tauch, Maria P. C. Schneider, John McCulloch, Louise T. Cerdeira, Rommel T. J. Ramos, Adhemar Zerlotini, Anderson Dominitini, Daniela M. Resende, Elisangela M. Coser, Luciana M. Oliveira, Andre L. Pedrosa, Carlos U. Vieira, Claudia T. Guimaraes, Daniela C. Bartholomeu, Diana M. Oliveira, Fabricio R. Santos, Elida Mara Rabelo, Francisco P. Lobo, Gloria R. Franco, Ana Flavia Costa, Ieso M. Castro, Silvia Regina Dias, Jesus A. Ferro, Jose Miguel Ortega, Luciano V. Paiva, Luiz R. Goulart, Juliana Franco Almeida, Maria Ines Ferro, Newton P. Carneiro, Paula R. K. Falcao, Priscila Grynberg, Santuza M. R. Teixeira, Sergio Brommonschenkel, Sergio C. Oliveira, Roberto Meyer, Robert J. Moore, Anderson Miyoshi, Guilherme C. Oliveira, and Vaco Azevedo
    Evidence for Reductive Genome Evolution and Lateral Acquisition of Virulence Functions in two Corynebacterium pseudotuberculosis strains
    PLoS One 6 (4): e18551 p., 2011
  22. Tobias Wittkop, Sven Rahmann, Richard Roettger, Sebastian Boecker, and Jan Baumbach
    Extension and robustness of Transitivity Clustering for protein-protein interaction network analysis
    Internet Mathematics 7 (4): 255-273, 2011
  23. Louise Teixeira Cerdeira, Aadriana Ribeiro Carneir, Rommel Thiago Juca Ramos, Sintia Silva de Almeida, Vivian D'Afonseca, Maria Paula Cruz Schneider, Jan Baumbach, Andreas Tauch, John Anthony McCulloch, Vasco Ariston Carvalho Azevedo, and Aartur Silva
    Rapid hybrid de novo assembly of a microbial genome using only short reads: Corynebacterium pseudotuberculosis I19 as a case study
    Journal of Microbiological Methods 86 (2): 218-223, 2011
  24. Elizaveta Krol, Jochen Blom, Jörn Winnebald, Alexander Berhörster, Melanie J. Barnett, Alexander Goesmann, Jan Baumbach, and Anke Becker
    RhizoRegNet - A database of rhizobial transcription factors and regulatory networks.
    Journal of Biotechnology 155 (1): 127-134, 2011
  25. Tobias Wittkop, Sven Rahmann, and Jan Baumbach
    Efficient Online Transcription Factor Binding Site Adjustment by Integrating Transitive Graph Projection with MoRAine 2.0
    In: Special Issue: 6th International Symposium on Integrative Bioinformatics, Cambridge, UK, 2010, 117,1-117,11, paper no. 117.
  26. Jan Baumbach
    On the power and limits of evolutionary conservation - unraveling bacterial gene regulatory networks
    Nucleic Acids Research 38 (22): 7877-7884, 2010. Note: in press
  27. Tobias Wittkop, Dorothea Emig, Sita Lange, Sven Rahmann, Mario Albrecht, John H. Morris, Sebastian Böcker, Jens Stoye, and Jan Baumbach
    Partitioning biological data with transitivity clustering
    Nature Methods 7 (6): 419-420, 2010
  28. Dorothea Emig, Nathan Salomonis, Jan Baumbach, Thomas Lengauer, Bruce R. Conklin, and Mario Albrecht
    AltAnalyze and DomainGraph: analyzing and visualizing exon expression data
    Nucleic Acids Research 38 (Suppl. 2): W755-W762, 2010