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MPI-INF D3 Publications

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BibTeX cite keyAuthor/EditorYearTitleType
Adams2012Adams, David
Altucci, Lucia
Antonarakis, Stylianos E
Ballesteros, Juan
Beck, Stephan
Bird, Adrian
Bock, Christoph
Boehm, Bernhard
Campo, Elias
Caricasole, Andrea
Dahl, Fredrik
Dermitzakis, Emmanouil T
Enver, Tariq
Esteller, Manel
Estivill, Xavier
Ferguson-Smith, Anne
Fitzgibbon, Jude
Flicek, Paul
Giehl, Claudia
Graf, Thomas
Grosveld, Frank
Guigó, Roderic
Gut, Ivo
Helin, Kristian
Jarvius, Jonas
Küppers, Ralf
Lehrach, Hans
Lengauer, Thomas
Lernmark, Åke
Leslie, David
Loeffler, Markus
Macintyre, Elizabeth
Mai, Antonello
Martens, Joost H A
Minucci, Saverio
Ouwehand, Willem H
Pelicci, Pier Giuseppe
Pendeville, Hèléne
Porse, Bo
Rakyan, Vardhman
Reik, Wolf
Schrappe, Martin
Schübeler, Dirk
Seifert, Martin
Siebert, Reiner
Simmons, David
Soranzo, Nicole
Spicuglia, Salvatore
Stratton, Michael
Stunnenberg, Hendrik G
Tanay, Amos
Torrents, David
Valencia, Alfonso
Vellenga, Edo
Vingron, Martin
Walter, Jörn
Willcocks, Spike
2012BLUEPRINT to decode the epigenetic signature written in blood
In: Nature Biotechnology [30], 224-226
Journal Article
Adolph03Olsen, Lars
Antony, Jens
Ryde, Ulf
Adolph, Hans-Werner
Hemmingsen, Lars
2003Lactam hydrolysis catalyzed by mononuclear metallo-beta-lactamases: a density functional study
In: Journal of Physical Chemistry / B [107], 2366-2375
Journal Article
Albrecht2000Hoffmann, Daniel
Schnaible, Volker
Wefing, Stephan,
Albrecht, Mario
Hanisch, Daniel
Zimmer, Ralf
2002A new method for the fast solution of protein-3D-structures, combining experiments and bioinformatics
In: Coupling of Biological and Electronic Systems: Proceedings of the 2nd Caesarium, Bonn, 1-3 November 2000, 59-78
Proceedings Article
Albrecht2002Albrecht, Mario
Hanisch, Daniel
Zimmer, Ralf
Lengauer, Thomas
2002Attachment IconImproving fold recognition of protein threading by experimental distance constraints
In: In Silico Biology [2], 325-337
Journal Article
Albrecht2003aAlbrecht, Mario
Domingues, Francisco S.
Schreiber, Stefan
Lengauer, Thomas
2003Identification of mammalian orthologs associates PYPAF5 with distinct functional roles
In: FEBS Letters [538], 173-177
Journal Article
Albrecht2003bAlbrecht, Mario
Lengauer, Thomas
2003Pyranose oxidase identified as a member of the GMC oxidoreductase family
In: Bioinformatics [19], 1216-1220
Journal Article
Albrecht2003cAlbrecht, Mario
Lengauer, Thomas
Schreiber, Stefan
2003Disease-associated variants in PYPAF1 and NOD2 result in similar alterations of conserved sequence
In: Bioinformatics [19], 2171-2175
Journal Article
Albrecht2003dAlbrecht, Mario
Hoffmann, Daniel
Evert, Bernd O.
Schmitt, Ina
Wüllner, Ullrich
Lengauer, Thomas
2003Structural modeling of ataxin-3 reveals distant homology to adaptins
In: Proteins: Structure, Function, and Genetics [50], 355-370
Journal Article
Albrecht2003eAlbrecht, Mario
Tosatto, Silvio C.E.
Lengauer, Thomas
Valle, Giorgio
2003Simple consensus procedures are effective and sufficient in secondary structure prediction
In: Protein Engineering [16], 459-462
Journal Article
Albrecht2003fAlbrecht, Mario
Domingues, Francisco S.
Schreiber, Stefan
Lengauer, Thomas
2003Structural localization of disease-associated sequence variations in the NACHT and LRR domains of PYPAF1 and NOD2
In: FEBS Letters [554], 520-528
Journal Article
Albrecht2004aAlbrecht, Mario
Lengauer, Thomas
2004Survey on the PABC recognition motif PAM2
In: Biochemical and Biophysical Research Communications [316], 129-138
Journal Article
Albrecht2004bStoll, Monika
Corneliussen, Brit
Costello, Christine M.
Waetzig, Georg H.
Mellgard, Bjorn
Koch, W. Andreas
Rosenstiel, Philip
Albrecht, Mario
Croucher, Peter J.P.
Seegert, Dirk
Nikolaus, Susanna
Hampe, Jochen
Lengauer, Thomas
Pierrou, Stefan
Foelsch, Ulrich R.
Mathew, Christopher G.
Lagerstrom-Fermer, Maria
Schreiber, Stefan
2004Genetic variation in DLG5 is associated with inflammatory bowel disease
In: Nature Genetics [36], 376-380
Journal Article
Albrecht2004cAlbrecht, Mario
Lengauer, Thomas
2004Novel Sm-like proteins with long C-terminal tails and associated methyltransferases
In: FEBS Letters [569], 18-26
Journal Article
Albrecht2004dAlbrecht, Mario
Golatta, Michael
Wüllner, Ullrich
Lengauer, Thomas
2004Structural and functional analysis of ataxin-2 and ataxin-3
In: European Journal of Biochemistry [271], 3155-3170
Journal Article
Albrecht2005aAlbrecht, Mario
Choubey, Divaker
Lengauer, Thomas
2005The HIN domain of IFI-200 proteins consists of two OB folds
In: Biochemical and Biophysical Research Communications [327], 679-687
Journal Article
Albrecht2005bRalser, Markus
Albrecht, Mario
Nonhoff, Ute
Lengauer, Thomas
Lehrach, Hans
Krobitsch, Sylvia
2005An integrative approach to gain insights into the cellular function of human ataxin-2
In: Journal of Molecular Biology [346], 203-214
Journal Article
Albrecht2005cValentonyte, Ruta
Hampe, Jochen
Huse, Klaus
Rosenstiel, Philip
Albrecht, Mario
Stenzel, Annette
Nagy, Marion
Gaede, Karoline I.
Franke, Andre
Haesler, Robert
Koch, Andreas
Lengauer, Thomas
Seegert, Dirk
Reiling, Norbert
Ehlers, Stefan
Schwinger, Eberhard
Platzer, Mathias
Krawczak, Michael
Müller-Quernheim, Joachim
Schürmann, Manfred
Schreiber, Stefan
2005Sarcoidosis is associated with a truncating splice site mutation in BTNL2
In: Nature Genetics [37], 357-364
Journal Article
Albrecht2005dAlbrecht, Mario2005LRRK2 mutations and parkinsonism
In: The Lancet [365], 1230
Journal Article
Albrecht2005eVan Duist, Marjan M.
Albrecht, Mario
Podswiadek, Marta
Giachino, Daniela
Lengauer, Thomas
Punzi, Leonardo
De Marchi, Mario
2005A new CARD15 mutation in Blau syndrome
In: European Journal of Human Genetics [13], 742-747
Journal Article
Albrecht2005fSchreiber, Stefan
Rosenstiel, Philip
Albrecht, Mario
Hampe, Jochen
Krawczak, Michael
2005Genetics of Crohn disease, an archetypal inflammatory barrier disease
In: Nature Reviews Genetics [6], 376-388
Journal Article
Albrecht2005gSarrazin, Christoph
Mihm, Ulrike
Herrmann, Eva
Welsch, Christoph
Albrecht, Mario
Sarrazin, Ulrike
Traver, Stella
Lengauer, Thomas
Zeuzem, Stefan
2005Clinical significance of in vitro replication-enhancing mutations of the hepatitis C virus (HCV) replicon in patients with chronic HCV infection
In: The Journal of Infectious Diseases [192], 1710-1719
Journal Article
Albrecht2005hCostello, Christine M.
Mah, Nancy
Häsler, Robert
Rosenstiel, Philip
Waetzig, Georg H.
Hahn, Andreas
Lu, Tim
Gurbuz, Yesim
Nikolaus, Susanna
Albrecht, Mario
Hampe, Jochen
Lucius, Ralph
Klöppel, Günther
Eickhoff, Holger
Lehrach, Hans
Lengauer, Thomas
Schreiber, Stefan
2005Dissection of the inflammatory bowel disease transcriptome using genome-wide cDNA microarrays identifies novel candidate disease genes
In: PLoS Medicine [2], 771-787
Journal Article
Albrecht2005iRalser, Markus
Nonhoff, Ute
Albrecht, Mario
Lengauer, Thomas
Wanker, Erich E.
Lehrach, Hans
Krobitsch, Sylvia
2005Ataxin-2 and huntingtin interact with endophilin-A complexes to function in plastin-associated pathways
In: Human Molecular Genetics [14], 2893-2909
Journal Article
Albrecht2005jAlbrecht, Mario
Huthmacher, Carola
Tosatto, Silvio C.E.
Lengauer, Thomas
2005Decomposing protein networks into domain-domain interactions
In: Bioinformatics [21], ii220-ii221
Journal Article
Albrecht2005lCastellano, Sergi
Lobanov, Alexey V.
Chapple, Charles
Novoselov, Sergey V.
Albrecht, Mario
Hua, Deame
Lescure, Alain
Lengauer, Thomas
Krol, Alain
Gladyshev, Vadim N.
Guigó, Roderic
2005Diversity and functional plasticity of eukaryotic selenoproteins: Identification and characterization of the SelJ family
In: Proceedings of the National Academy of Sciences [102], 16188-16193
Journal Article
Albrecht2006aAlbrecht, Mario
Takken, Frank L. W.
2006Update on the domain architectures of NLRs and R proteins
In: Biochemical and Biophysical Research Communications [339], 459-462
Journal Article
Albrecht2006bTameling, Wladimir I.
Vossen, Jack H.
Albrecht, Mario
Lengauer, Thomas
Berden, Jan A.
Haring, Michel A.
Cornelissen, Ben J.C.
Takken, Frank L. W.
2006Mutations in the NB-ARC domain of I-2 that impair ATP hydrolysis cause autoactivation
In: Plant Physiology [140], 1233-1245
Journal Article
Albrecht2006cTakken, Frank L. W.
Albrecht, Mario
Tameling, Wladimir I.
2006Resistance proteins: molecular switches of plant defence
In: Current Opinion in Plant Biology [9], 383-390
Journal Article
Albrecht2006dMihm, Ulrike
Grigorian, Natalia
Welsch, Christoph
Herrmann, Eva
Kronenberger, Bernd
Teuber, Gerlinde
von Wagner, Michael
Hofmann, Wolf-Peter
Albrecht, Mario
Lengauer, Thomas
Zeuzem, Stefan
Sarrazin, Christoph
2006Amino acid variations in hepatitis C virus p7 and sensitivity to antiviral combination therapy with amantadine in chronic hepatitis C
In: Antiviral Therapy [11], 507-519
Journal Article
Albrecht2006eBoeddrich, Annett
Gaumer, Sébastien
Haacke, Annette
Tzvetkov, Nikolay
Albrecht, Mario
Evert, Bernd O.
Müller, Eva C.
Lurz, Rudi
Breuer, Peter
Schugardt, Nancy
Plaßmann, Stephanie
Xu, Kexiang
Warrick, John M.
Suopanki, Jaana
Wüllner, Ullrich
Frank, Ronald
Hartl, Ulrich F.
Bonini, Nancy M.
Wanker, Erich E.
2006An arginine/lysine-rich motif is crucial for VCP/p97-mediated modulation of ataxin-3 fibrillogenesis
In: EMBO Journal [25], 1547-1558
Journal Article
Albrecht2006fPlotz, Guido
Welsch, Christoph
Giron-Monzon, Luis
Friedhoff, Peter
Albrecht, Mario
Piiper, Albrecht
Biondi, Ricardo M.
Lengauer, Thomas
Zeuzem, Stefan
Raedle, Jochen
2006Attachment IconMutations in the MutSalpha interaction interface of MLH1 can abolish DNA mismatch repair
In: Nucleic Acids Research [34], 6574-6586
Journal Article
Albrecht2006gSalamat-Miller, Nazila
Fang, Jianwen
Seidel, Christopher W.
Smalter, Aaron M.
Assenov, Yassen
Albrecht, Mario
Middaugh, C. Russell
2006A network-based analysis of polyanion-binding proteins utilizing yeast protein arrays
In: Molecular and Cellular Proteomics [5], 2263-2278
Journal Article
Albrecht2006hSchlicker, Andreas
Huthmacher, Carola
Ramírez, Fidel
Lengauer, Thomas
Albrecht, Mario
2006Functional evaluation of domain-domain interactions and human protein interaction networks
In: German Conference on Bioinformatics (GCB 2006), 115-126
Proceedings Article
Albrecht2006iAlbrecht, Mario2006Combining protein structure prediction with experiments and functional information
Universität des Saarlandes
Thesis - PhD thesis
Albrecht2007aHampe, Jochen
Franke, Andre
Rosenstiel, Philip
Till, Andreas
Teuber, Markus
Huse, Klaus
Albrecht, Mario
Mayr, Gabriele
De La Vega, Francisco M.
Briggs, Jason
Günther, Simone
Prescott, Natalie J.
Onnie, Clive M.
Häsler, Robert
Sipos, Bence
Fölsch, Ulrich R.
Lengauer, Thomas
Platzer, Matthias
Mathew, Christopher G.
Krawczak, Michael
Schreiber, Stefan
2007A genome-wide association scan of nonsynonymous SNPs identifies a susceptibility variant for Crohn disease in ATG16L1
In: Nature Genetics [39], 207-211
Journal Article
Albrecht2007bSalamat-Miller, Nazila
Fang, Jianwen
Seidel, Christopher W.
Assenov, Yassen
Albrecht, Mario
Middaugh, C. Russell
2007Attachment IconA network-based analysis of polyanion-binding proteins utilizing human protein arrays
In: Journal of Biological Chemistry [282], 10153-10163
Journal Article
Albrecht2007cTress, Michael L.
Martelli, Pier L.
Frankish, Adam
Reeves, Gabrielle A.
Wesselink, Jan J.
Yeats, Corin
Ólason, Páll Í.
Albrecht, Mario
Hegyi, Hedi
Giorgetti, Alejandro
Raimondo, Domenico
Lagarde, Julien
Laskowski, Roman A.
López, Gonzalo
Sadowski, Michael I.
Watson, James D.
Fariselli, Piero
Rossi, Ivan
Nagy, Alinda
Kai, Wang
Størling, Zenia
Orsini, Massimiliano
Assenov, Yassen
Blankenburg, Hagen
Huthmacher, Carola
Ramírez, Fidel
Schlicker, Andreas
Denoued, France
Jones, Phil
Kerrien, Samuel
Orchard, Sandra
Antonarakis, Stylianos E.
Reymond, Alexandre
Birney, Ewan
Brunak, Søren
Casadio, Rita
Guigo, Roderic
Harrow, Jennifer
Hermjakob, Henning
Jones, David T.
Lengauer, Thomas
Orengo, Christine A.
Patthy, László
Thornton, Janet M.
Tramontano, Anna
Valencia, Alfonso
2007Attachment IconThe implications of alternative splicing in the ENCODE protein complement
In: Proceedings of the National Academy of Sciences [104], 5495-5500
Journal Article
Albrecht2007eRamírez, Fidel
Schlicker, Andreas
Assenov, Yassen
Lengauer, Thomas
Albrecht, Mario
2007Computational analysis of human protein interaction networks
In: Proteomics [7], 2541-2552
Journal Article
Albrecht2007gSchlicker, Andreas
Huthmacher, Carola
Ramírez, Fidel
Lengauer, Thomas
Albrecht, Mario
2007Attachment IconFunctional evaluation of domain-domain interactions and human protein interaction networks
In: Bioinformatics [23], 859-865
Journal Article
Albrecht2007hFranke, Andre
Hampe, Jochen
Rosenstiel, Philip
Becker, Christoph
Wagner, Florian
Häsler, Robert
Little, Randall D.
Huse, Klaus
Ruether, Andreas
Balschun, Tobias
Wittig, Michael
ElSharawy, Abdou
Mayr, Gabriele
Albrecht, Mario
Prescott, Natalie J.
Onnie, Clive M.
Fournier, Hélène
Keith, Tim
Radelof, Uwe
Platzer, Matthias
Mathew, Christopher G.
Stoll, Monika
Krawczak, Michael
Nürnberg, Peter
Schreiber, Stefan
2007Systematic association mapping identifies NELL1 as a novel IBD disease gene
In: PLoS ONE [2], e691.1-13
Journal Article
Albrecht2007iSöderhäll, Cilla
Marenholz, Ingo
Kerscher, Tamara
Rüschendorf, Franz
Esparza-Gordillo, Jorge
Worm, Margitta
Gruber, Christoph
Mayr, Gabriele
Albrecht, Mario
Rohde, Klaus
Schulz, Herbert
Wahn, Ulrich
Hubner, Norbert
Lee, Young-Ae
2007Attachment IconVariants in a novel epidermal collagen gene (COL29A1) are associated with atopic dermatitis
In: PLoS Biology [5], e242.1952-1961
Journal Article
Albrecht2007jScheller, Nicoletta
Resa-Infante, Patricia
de la Luna, Susana
Galao, Rui Pedro
Albrecht, Mario
Kaestner, Lars
Lipp, Peter
Lengauer, Thomas
Meyerhans, Andreas
Díez, Juana
2007Identification of PatL1, a human homolog to yeast P body component Pat1
In: Biochimica et Biophysica Acta - Molecular Cell Research [1773], 1786-1792
Journal Article
Albrecht2008aSchlicker, Andreas
Albrecht, Mario
2008Attachment IconFunSimMat: a comprehensive functional similarity database
In: Nucleic Acids Research [36], D434-D439
Journal Article
Albrecht2008bAssenov, Yassen
Ramírez, Fidel
Schelhorn, Sven-Eric
Lengauer, Thomas
Albrecht, Mario
2008Computing topological parameters of biological networks
In: Bioinformatics [24], 282-284
Journal Article
Albrecht2008cWelsch, Christoph
Domingues, Francisco S.
Susser, Simone
Antes, Iris
Hartmann, Christoph
Mayr, Gabriele
Schlicker, Andreas
Sarrazin, Christoph
Albrecht, Mario
Zeuzem, Stefan
Lengauer, Thomas
2008Attachment IconMolecular basis of telaprevir resistance due to V36 and T54 mutations in the NS3-4A protease of HCV
In: Genome Biology [9], R16
Journal Article
Albrecht2008dVan Ooijen, Gerben
Mayr, Gabriele
Kasiem, Mobien M. A.
Albrecht, Mario
Cornelissen, Ben J. C.
Takken, Frank L. W.
2008Structure-function analysis of the NB-ARC domain of plant disease resistance proteins
In: Journal of Experimental Botany [59], 1383-1397
Journal Article
Albrecht2008eVan Ooijen, Gerben
Mayr, Gabriele
Albrecht, Mario
Cornelissen, Ben J. C.
Takken, Frank L. W.
2008Transcomplementation, but not physical association of the CC-NB-ARC and LRR domains of tomato R protein Mi-1.2 is altered by mutations in the ARC2 subdomain
In: Molecular Plant [1], 401-410
Journal Article
Albrecht2008fJenkinson, Andrew M.
Albrecht, Mario
Birney, Ewan
Blankenburg, Hagen
Down, Thomas
Finn, Robert D.
Hermjakob, Henning
Hubbard, Tim J. P.
Jimenez, Rafael C.
Jones, Philip
Kähäri, Andreas
Kulesha, Eugene
Macías, José R.
Reeves, Gabrielle A.
Prlić, Andreas
2008Integrating biological data - the Distributed Annotation System
In: BMC Bioinformatics [9], S3.1-7
Journal Article
Albrecht2008gEmig, Dorothea
Klein, Karsten
Kunert, Anne
Mutzel, Petra
Albrecht, Mario
2008Visualizing domain interaction networks and the impact of alternative splicing events
In: Proceedings of the 5th International Conference on BioMedical Visualization (MediVis): Information Visualization in Medical and Biomedical Informatics, 36-43
Proceedings Article
Albrecht2008hEmig, Dorothea
Cline, Melissa S.
Klein, Karsten
Kunert, Anne
Mutzel, Petra
Lengauer, Thomas
Albrecht, Mario
2008Integrative visual analysis of the effects of alternative splicing on protein domain interaction networks
In: Journal of Integrative Bioinformatics [5], 101-115
Journal Article
Albrecht2008iFranke, Andre
Balschun, Tobias
Karlsen, Tom H.
Sventoraityte, Jurgita
Nikolaus, Susanna
Mayr, Gabriele
Domingues, Francisco S.
Albrecht, Mario
Nothnagel, Michael
Ellinghaus, David
Sina, Christian
Onnie, Clive M.
Weersma, Rinse K.
Stokkers, Pieter C. F.
Wijmenga, Cisca
Gazouli, Maria
Strachan, David
McArdle, Wendy L.
Vermeire, Séverine
Rutgeers, Paul
Rosenstiel, Philip
Krawczak, Michael
Vatn, Morten H.
IBSEN study group, the
Mathew, Christopher G.
Schreiber, Stefan
2008Sequence variants in IL10, ARPC2, and multiple other loci contribute to ulcerative colitis
In: Nature Genetics [40], 1319-1323
Journal Article
Albrecht2008jEmig, Dorothea
Cline, Melissa S.
Lengauer, Thomas
Albrecht, Mario
2008Integrating expression data with domain interaction networks
In: Bioinformatics [24], 2546-2548
Journal Article
Albrecht2008kFrishman, Dmitrij
Albrecht, Mario
Blankenburg, Hagen
Bork, Peer
Harrington, Eoghan D.
Hermjakob, Henning
Jensen, Lars J.
Juan, David A.
Lengauer, Thomas
Pagel, Philipp
Schachter, Vincent
Valencia, Alfonso
2009Protein-protein interactions: analysis and prediction
In: Modern Genome Annotation - The Biosapiens Network, 353-410
Part of a Book
Albrecht2008lSchelhorn, Sven-Eric
Lengauer, Thomas
Albrecht, Mario
2008An integrative approach for predicting interactions of protein regions
In: Bioinformatics [24], i35-i41
Journal Article
Albrecht2009aBlankenburg, Hagen
Finn, Robert D.
Prlić, Andreas
Jenkinson, Andrew M.
Ramírez, Fidel
Emig, Dorothea
Schelhorn, Sven-Eric
Büch, Joachim
Lengauer, Thomas
Albrecht, Mario
2009DASMI: exchanging, annotating and assessing molecular interaction data
In: Bioinformatics [25], 1321-1328
Journal Article
Albrecht2009bBlankenburg, Hagen
Ramírez, Fidel
Büch, Joachim
Albrecht, Mario
2009DASMIweb: online integration, analysis and assessment of distributed protein interaction data
In: Nucleic Acids Research [37], W122-W128
Electronic Journal Article
Albrecht2009cAlbrecht, Mario
Kerren, Andreas
Klein, Karsten
Kohlbacher, Oliver
Mutzel, Petra
Paul, Wolfgang
Schreiber, Falk
Wybrow, Michael
2010On open problems in biological network visualization
In: Graph Drawing : 17th International Symposium, GD 2009, 256-267
Proceedings Article
Albrecht2010aSchlicker, Andreas
Albrecht, Mario
2010FunSimMat update: new features for exploring functional similarity
In: Nucleic Acids Research [38], D244-D248
Journal Article
Albrecht2010bRamírez, Fidel
Albrecht, Mario
2010Finding scaffold proteins in interactomes
In: Trends in Cell Biology [20], 2-4
Journal Article
Albrecht2010cFranke, Andre
Balschun, Tobias
Sina, Christian
Ellinghaus, David
Häsler, Robert
Mayr, Gabriele
Albrecht, Mario
Wittig, Michael
Buchert, Eva
Nikolaus, Susanna
Gieger, Christian
Wichmann, H. Erich
Sventoraityte, Jurgita
Kupcinskas, Limas
Onnie, Clive M.
Gazouli, Maria
Anagnou, Nicholas P.
Strachan, David
McArdle, Wendy L.
Mathew, Christopher G.
Rutgeerts, Paul
Vermeire, Séverine
Vatn, Morten H.
Krawczak, Michael
Rosenstiel, Philip
Karlsen, Tom H.
Schreiber, Stefan
2010Genome-wide association study for ulcerative colitis identifies risk loci at 7q22 and 22q13 (IL17REL)
In: Nature Genetics [42], 292-294
Journal Article
Albrecht2010dSchlicker, Andreas
Lengauer, Thomas
Albrecht, Mario
2010Improving disease gene prioritization using the semantic similarity of Gene Ontology terms
In: Bioinformatics [26], i561-i567
Journal Article
Albrecht2010eWelker, Martin-Walter
Welsch, Christoph
Meyer, Aline
Antes, Iris
Albrecht, Mario
Forestier, Nicole
Kronenberger, Bernd
Lengauer, Thomas
Piiper, Albrecht
Zeuzem, Stefan
Sarrazin, Christoph
2010Dimerization of the hepatitis C virus nonstructural protein 4B depends on the integrity of an aminoterminal basic leucine zipper
In: Protein Science [19], 1327-1336
Journal Article
Albrecht2010fEmig, Dorothea
Salomonis, Nathan
Baumbach, Jan
Lengauer, Thomas
Conklin, Bruce R.
Albrecht, Mario
2010AltAnalyze and DomainGraph: analyzing and visualizing exon expression data
In: Nucleic Acids Research [38], W755-W762
Journal Article
Albrecht2010gEmig, Dorothea
Kacprowski, Tim
Albrecht, Mario
2010Measuring and analyzing tissue specificity of human genes and protein complexes
In: Seventh International Workshop on Computational Systems
Biology, WCSB 2010, 27-30
Proceedings Article
Albrecht2010hAlbrecht, Mario2010Color blindness
In: Nature Methods [7], 775
Journal Article
Albrecht2010iBrunner, Susanne
Hurni, Severine
Streckeisen, Philipp
Mayr, Gabriele
Albrecht, Mario
Yahiaoui, Nabila
Keller, Beat
2010Intragenic allele pyramiding combines different specificities of wheat Pm3 resistance alleles
In: The Plant Journal [64], 433-445
Journal Article
Albrecht2010jEllinghaus, Eva
Ellinghaus, David
Stuart, Philip E.
Nair, Rajan P.
Debrus, Sophie
Raelson, John V.
Belouchi, Majid
Fournier, Hélène
Reinhard, Claudia
Ding, Jun
Li, Yun
Tejasvi, Trilokraj
Gudjonsson, Johann
Stoll, Stefan W.
Voorhees, John J.
Lambert, Sylviane
Weidinger, Stephan
Eberlein, Bernadette
Kunz, Manfred
Rahman, Proton
Gladman, Dafna D.
Gieger, Christian
Wichmann, H. Erich
Karlsen, Tom H.
Mayr, Gabriele
Albrecht, Mario
Kabelitz, Dieter
Mrowietz, Ulrich
Abecasis, Gonçalo R.
Elder, James T.
Schreiber, Stefan
Weichenthal, Michael
Franke, Andre
2010Genome-wide association study identifies a psoriasis susceptibility locus at TRAF3IP2
In: Nature Genetics [42], 991-995
Journal Article
Albrecht2011aReiss, Simon
Rebhan, Ilka
Backes, Perdita
Romero-Brey, Ines
Erfle, Holger
Matula, Petr
Kaderali, Lars
Poenisch, Marion
Blankenburg, Hagen
Hiet, Marie-Sophie
Longerich, Thomas
Diehl, Sarah
Ramírez, Fidel
Balla, Tamas
Rohr, Karl
Kaul, Artur
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Universität des Saarlandes
Thesis - PhD thesis
Beerenwinkel2004Beerenwinkel, Niko2004Computational Analysis of HIV Drug resistance DataBook
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Walter, Hauke
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Beggel2011sSvichera, Valentina
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Universität des Saarlandes
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Universität des Saarlandes
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Blankenburg2007aBlankenburg, Hagen2007A Distributed Annotation System for Molecular Interactions
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Universität des Saarlandes
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Mikeska, Thomas
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Lengauer, Thomas
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Bock2010bBock, Christoph
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Halachev, Konstantin
Taylor, James
Nekrutenko, Anton
Lengauer, Thomas
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Boulting, Gabriella
Smith, Zachary D.
Ziller, Michael
Croft, Gist F.
Amoroso, MacKenzie W.
Oakley, Derek H.
Gnirke, Andreas
Eggan, Kevin
Meissner, Alexander
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Albrecht, F.
Lengauer, Thomas
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Brinkman, Arie B.
Müller, Fabian
Simmer, Femke
Gu, Hongcang
Jäger, Natalie
Gnirke, Andreas
Stunnenberg, Hendrik G.
Meissner, Alexander
2010Attachment IconQuantitative comparison of genome-wide DNA methylation mapping technologies
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Bogojeska2007aBogojeska, Jasmina2007Stability analysis of oncogenetic trees mixture models
Universität des Saarlandes
Thesis - Masters thesis
Bogojeska2010Bogojeska, Jasmina
Bickel, Steffen
Altmann, André
Lengauer, Thomas
2010Attachment IconDealing with sparse data in predicting outcomes of HIV combination therapies
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Bogojeska2011Bogojeska, Jasmina2011History distribution matching method for predicting effectiveness of HIV combination therapies
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Bogojeska2012aBogojeska, Jasmina
Lengauer, Thomas
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Bogojeska2012bBogojeska, Jasmina
Stöckel, Daniel
Zazzi, Maurizio
Kaiser, Rolf
Incardona, Francesca
Rosen-Zvi, Michal
Lengauer, Thomas
2012History-alignment models for bias-aware prediction of virological response to HIV combination therapy
In: Proceedings of the Fifteenth International Conference on Artificial Intelligence and Statistics (AISTATS 2012), 118-126
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BogojeskaPhD2011Bogojeska, Jasmina2011Attachment IconStatistical Learning Methods for Bias-aware HIV Therapy Screening
Universität des Saarlandes
Thesis - PhD thesis
Bogojeska_bmc_2008Bogojeska, Jasmina
Lengauer, Thomas
Rahnenführer, Jörg
2008Stability analysis of mixtures of mutagenetic trees
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Bogojeska_trees_2008Bogojeska, Jasmina
Alexa, Adrian
Altmann, André
Lengauer, Thomas
Rahnenführer, Jörg
2008Attachment IconRtreemix: an R package for estimating evolutionary pathways and genetic progression scores
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Bozek2009Bozek, Kasia
Relógio, Angela
Kielbasa, Szymon M.
Heine, Markus
Dame, Christof
Kramer, Achim
Herzel, Hanspeter
2009Regulation of clock-controlled genes in mammals.
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Bozek2009aBozek, Kasia
Thielen, Alexander
Sierra, Saleta
Kaiser, Rolf
Lengauer, Thomas
2009V3 loop sequence space analysis suggests different evolutionary patterns of CCR5- and CXCR4-tropic HIV.
In: PLoS One [4], e7387:1-e.7387:14
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Bozek2010aBozek, Katarzyna
Lengauer, Thomas
2010Positive selection of HIV host factors and the evolution of lentivirus genes
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BozekCircadianLiver2010Bozek, Katarzyna
Rosahl, A. L.
Gaub, S.
Lorenzen, S.
Herzel, H.
2010Circadian transcription in liver
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BozekDiss2011Bozek, Katarzyna2011Attachment IconAnalysis of HIV-host interaction on different scales.
Universität des Saarlandes
Thesis - PhD thesis
Calvanese2012Calvanese, Vincenzo
Fernandez, Agustín F.
Urdinguio, Rocío G.
Suarez-Álvarez, Beatriz
Mangas, Cristina
Pérez-García, Vicente
Bueno, Clara
Montes, Rosa
Ramos-Mejía, Verónica
Martínez-Camblor, Pablo
Ferrero, Cecilia
Assenov, Yassen
Bock, Christoph
Menendez, Pablo
Carrera, Ana Clara
Lopez-Larrea, Carlos
Fraga, Mario F.
2012A promoter DNA demethylation landscape of human hematopoietic differentiation
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Codoner2010Codoñer, Francisco M
Pou, Christian
Thielen, Alexander
García, Federico
Delgado, Rafael
Dalmau, David
Santos, José Ramon
Buzón, Maria José
Martínez-Picado, Javier Alvarez-Tejado, Miguel
Clotet, Bonaventura
Ruiz, Lidia
Paredes, Roger
2010Dynamic escape of pre-existing raltegravir-resistant HIV-1 from raltegravir selection pressure
In: Antiviral Research [88], 281-286
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Codoner2011Codoner, Francisco
Pou, Christian
Thielen, Alexander
García, Federico
Delgado, Rafael
Dalmau, David
Álvarez-Tejado, Miguel
Ruiz, Lidia
Clotet, Bonaventura
Paredes, Roger
2011Added value of deep sequencing relative to population sequencing in heavily pre-treated HIV-1-infected subjects
In: PLoS One [6], e19461,1-e19461,5
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Däumeretal2010Däumer, Martin
Awerkiew, Sabine
Sierra Aragon, Saleto
Kartashev, Vladimir
Poplavskaja, Tatjana
Klein, Rolf
Sichtig, Nadine
Thielen, Bernhard
Lengauer, Thomas
Roomp, Kirsten
Pfister, Herbert
Kaiser, Rolf
2010Short Communication: Selection of Thymidine Analogue Resitance Mutational Patterns in Children from a Common HIV Type 1 Subtype G Source
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Daumer2008Däumer, Martin
Kaiser, Rolf
Klein, Rolf
Lengauer, Thomas
Thiele, Bernhard
Thielen, Alexander
2008Inferring viral tropism from genotype with massively parallel sequencing; qualitative and quantitative analysis
In: Antiviral Therapy, A101
Poster
Diehl2009aDiehl, Sarah2009Analysis and reconstruction of protein complex topology
Universität des Saarlandes
Thesis - Masters thesis
Dietzen2007Dietzen, Matthias2007An additive tree-based approach to the prediction of the strength of acidity for drug-like molecules
Universität des Saarlandes
Thesis - Masters thesis
Dietzen2011Bleif, Sabrina
Hannemann, Frank
Lisurek, Michael
von Kries, Jens Peter
Zapp, Josef
Dietzen, Matthias
Antes, Iris
Bernhardt, Rita
2011Identification of CYP106A2 as a Regioselective Allylic Bacterial Diterpene Hydroxylase
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Dietzen2012Dietzen, Matthias
Zotenko, Elena
Hildebrandt, Andreas
Lengauer, Thomas
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djoumbou2005Djoumbou, Yannick2005Docking studies to investigate the effect of correlated mutations in the HIV-Protease on the drug resistance of HIV
Universität des Saarlandes
Thesis - Bachelor thesis
Djoumbou2008Djoumbou, Yannick2008Molecular Dynamics based prediction of HIV-1 drug resistance
Universität des Saarlandes
Thesis - Masters thesis
Doering2011Döring, Matthias2011Web Implementation of the HBV Dual Infection Model
Universität des Saarlandes
Thesis - Bachelor thesis
Dörr2010aDörr, Barbara2010Using copy number variation fpr predicting susceptibility to glioblastoma
Universität des Saarlandes
Thesis - Bachelor thesis
DomingLengSommer2004aDomingues, Francisco S.
Lengauer, Thomas
Sommer, Ingolf
2004Protein Structure Prediction and Databases
In: Nature Encyclopedia of the Human Genome, 864-867
Part of a Book
Domingues2004Domingues, Francisco S.
Rahnenführer, Jörg
Lengauer, Thomas
2004Automated clustering of ensembles of alternative models in protein structure databases
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Domingues2004aPrlic, Andreas
Domingues, Francisco S.
Lackner, Peter
Sippl, Manfred J.
2004WILMA-automated annotation of protein sequences
In: Bioinformatics [20], 127-128
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Domingues2007bDomingues, Francisco S.
Rahnenführer, Jörg
Lengauer, Thomas
2007Conformational analysis of alternative protein structures
In: Bioinformatics [23], 3131-3138
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DominguesLengauer2003bDomingues, Francisco S.
Lengauer, Thomas
2003Protein Function from Sequence and Structure Data
In: Applied Bioinformatics [2], 3-12
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DominguesS2008Watson, James D.
Thornton, Janet M.
Tress, Michael L.
Lopez, Gonzalo
Valencia, Alfonso
Redfern, Oliver
Orengo, Christine A.
Sommer, Ingolf
Domingues, Francisco S.
2008Structure to function
In: Modern Genome Annotation, 239-262
Part of a Book
Doncheva2009aDoncheva, Nadezhda, T.2009Analysis and visualization of residue interaction networks
Universität des Saarlandes
Thesis - Masters thesis
Ebert2009aEbert, Peter2009Computational Analysis of genomic HPV data
Universität des Saarlandes
Thesis - Bachelor thesis
Ebrahimi2011Ebrahimi, Mansou
Lakizadeh, Amir
Agha-Golzadeh, Esmaeil
Ebrahimi, Mahdi
2011Prediction of Thermostability from Amino Acid Attributes by Combination of Clustering with Attribute Weighting: A New Vista in Engineering Enzymes
In: PLoS One [6], e23146,1-e23146,11
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EldarovMaster2012Eldarov, Nasimi2012Modeling influenza evolution in response to immune system pressure
Universität des Saarlandes
Thesis - Masters thesis
Emig2007aEmig, Dorothea2007The Impact of Alternative Splicing on Protein Interaction Networks
Eberhard Karls Universität Tübingen
Thesis - other
Emig2011Emig, Dorothea2011Novel analysis approaches to context-dependent molecular networks
Universität des Saarlandes
Thesis - PhD thesis
Eyrisch2004aEyrisch, Susanne2004Attachment IconFun2Struc-A Tool For Predicting Protein Structure
Classes from Function Predictions
Universität des Saarlandes
Thesis - Bachelor thesis
Feuerbach2007Feuerbach, Lars2007Attachment IconTowards Comparative Epigenomics: A Pilot Study on DNA Methylation of CpG Islands on Human Chromosome 21
Universität des Saarlandes
Thesis - Masters thesis
Feuerbach2008Feuerbach, Lars
Christopher, Bock
Halachev, Konstantin
Büch, Joachim
Lengauer, Thomas
2008Towards Comparative Epigenomics: A Software Toolkit For Cross-Species Epigenome Data Analysis
In: Abstracts of the 2nd MC-GARD Meeting, 230
Electronic Proceedings Article
Feuerbach2009_Poster1Feuerbach, Lars
Halachev, Konstantin
Lengauer, Thomas
Bock, Christoph
2009An exhaustive methode for CpG island annotation
In: Special Issue: Abstracts of the 3rd MC-GARD Meeting, 146-146
Poster
Feuerbach2010P1Feuerbach, Lars
Lyngsoe, Rune
Lengauer, Thomas
Hein, Jotun
2010Comparative Epigenomiocs - Towards Ancestral Germline Methylome Reconstruction
In: Abstracts of papers presented at the 2010 meeting on The Biology of genomes, 87
Poster
Feuerbach2010_P2Feuerbach, Lars
Lengauer, Thomas
2010Ancestral germline methylation reconstruction of young repeats
In: Transcription, chromatin structure and DNA repair in development and differentiation, 81
Poster
Feuerbach2011aFeuerbach, Lars
Lyngso, Rune B.
Lengauer, Thomas
Hein, Jotun
2011Reconstructing the ancestral germline methylation state of young repeats
In: Molecular Biology and Evolution [28], 1777-1784
Journal Article
Fischer2008Fischer, Sandra2008Structure-based prediction of HIV-1 drug resistance
Universität des Saarlandes
Thesis - Masters thesis
FMueller2008_bachelorMüller, Fabian2008Inferring virological response to antiretroviral combination therapy based on past treatment lines
Universität des Saarlandes
Thesis - Bachelor thesis
Frings2006aFrings, Oliver2006Development of a
Smith-Waterman-Like Multi-Aspect
Alignment Tool
Universität des Saarlandes
Thesis - Bachelor thesis
GalataBachelor2012Galata, Valentina2012Applying Lasso regression to related cell types for gene network astimation
Universität des Saarlandes
Thesis - Bachelor thesis
Gatzmann2010aGatzmann, Fanny2010GOdot Sequence - function prediction from protein sequence
Universität des Saarlandes
Thesis - Bachelor thesis
Glaab2006aGlaab, Enrico2006On the predictability of CpG methylation in human tissue at single basepair resolution
Universität des Saarlandes
Thesis - Bachelor thesis
GuBock2010Gu, Hongcang
Bock, Christoph
Mikkelsen, Tarjei S.
Jäger, Natalie
Smith, Zachary D.
Tomazou, Eleni
Gnirke, Andreas
Lander, Eric S.
Meissner, Alexander
2010Attachment IconGenome-scale DNA methylation mapping of clinical samples at single-nucleotide resolution
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Journal Article
Guo2006aGuo, Xin2006Improving Fold Recognition Using Protein
and Domain Interactions
Universität des Saarlandes
Thesis - Masters thesis
Gwinner2009Gwinner, Frederik2009Assessing the Conservation of Protein Function on Evolutionary Defined Patches
Universität des Saarlandes
Thesis - Masters thesis
Hahn2002Hahn, Andreas
Costello, Christine M.
Lu, Tim
Lengauer, Thomas
Schreiber, Stefan
2002Attachment IconExpression analysis for inflammatory bowel disease
In: Proceedings of the n?th Conference on, ?
Poster
Hahn2004Hahn, Andreas
Costello, Christine M.
Lu, Tim
Lengauer, Thomas
Schreiber, Stefan
2004Expression analysis for inflammatory bowel disease
In: Workshop Poster Competition, ?
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Hahn2005Hahn, Andreas
Rahnenführer, Jörg
Talwar, Priti
Lengauer, Thomas
2005Confirmation of human protein interaction data by human expression data
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Journal Article
Haid2007Haid, Carla2007BSIFlex: Binding Site Identification including protein flexibility
Universität des Saarlandes
Thesis - Masters thesis
halachev2012Halachev, Konstantin
Bast, Hannah
Albrecht, Felipe
Lengauer, Thomas
Bock, Christoph
2012Attachment IconEpiExplorer: live exploration and global analysis of large epigenomic datasets
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HalachevMaster2006Halachev, Konstantin2006EpiGRAPHregression: A toolkit for (epi-)genomic correlation analysis and prediction of quantitative attributes
Universität des Saarlandes
Thesis - Masters thesis
Harrigan2009IDRWHarrigan, P Richard
McGovern, Rachel
Dong, Winnie
Thielen, Alexander
Jensen, Mark
Mo, Theresa
Chapman, Douglas
Lewis, Marilyn
James, Ian
Valdez, Hernan
2009Screening for HIV tropism using population-based V3 genotypic analysis: a retrospective outcome analysis using stored plasma screening samples from MOTIVATE-1
In: Abstracts presented at the XVIII International HIV Drug Resistance Workshop : Basic Principles & Clinical Implications, A17-A17
Poster
Harris2010Harris, R. Alan
Wang, Ting
Coarfa, Cristian
Nagarajan, Raman P.
Hong, Chibo
Downey, Sara L.
Johnson, Brett E.
Fouse, Shaun D.
Delaney, Allen
Zhao, Yongjun
Olshen, Adam
Ballinger, Tracy
Zhou, Xin
Forsberg, Kevin J.
Gu, Junchen
Echipare, Lorigail
O'Geen, Heriette
Lister, Ryan
Pelizzola, Mattia
Xi, Yuanxin
Epstein, Charles B.
Bernstein, Bradley E.
Hawkins, R. David
Ren, Bing
Chung, Wen-Yu
Gu, Hongcang
Bock, Christoph
Gnirke, Andreas
Zhang, Michael Q.
Haussler, David
Ecker, Joseph R.
Li, Wei
Farnham, Peggy J.
Waterland, Robert a.
Meissner, Alexander
Marra, Marco A.
Hirst, Martin
Milosavljevic, Aleksandar
Costello, Joseph F.
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Hartmann2007Hartmann, Christoph
Antes, Iris
Lengauer, Thomas
2007Attachment IconIRECS: A new algorithm for the selection of most probable ensembles of side-chain conformations in protein models.
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hartmann2008Hartmann, Christoph2008Modeling of Flexible Side Chains for Protein-Ligand Docking
Universität des Saarlandes
Thesis - PhD thesis
Hartmann2009Hartmann, Christoph
Antes, Iris
Lengauer, Thomas
2009Docking and scoring with alternative side-chain conformations
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Hauschild2011aHauschild, Anne-Christin2011Modeling HIV Neutralization
Universität des Saarlandes
Thesis - Masters thesis
Hauschild2012Hauschild, Anne-Christin
Baumbach, Jörg Ingo
Baumbach, Jan
2012Attachment IconIntegrated statistical learning of metabolic ion mobility spectrometry profiles for pulmonary disease identification
In: Genetics and Molecular Research [11], 2733-2744
Electronic Journal Article
Hauschild2012bHauschild, Anne-Christin
Schneider, Till
Pauling, Josch
Rupp, Kathrin
Jang, Mi
Baumbach, Jörg Ingo
Baumbach, Jan
2012Attachment IconComputational Methods for Metabolomic Data Analysis of Ion Mobility Spectrometry Data - Reviewing the State of the Art
In: Metabolites [2], 733-755
Electronic Journal Article
Hauschild2012cHauschild, Anne-Christin
Kopczynski, Dominik
D'Addario, Marianna
Baumbach, Joerg Ingo
Rahmann, Sven
Baumbach, Jan
2013Peak Detection Method Evaluation for Ion Mobility Spectrometry by using Machine Learning Approaches
In: Metabolites [3], 277-293
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Hauschild2013bHauschild, Anne-Christin
Baumbach, Joerg Ingo
Baumbach, Jan
2013Attachment IconPaving the Way for Automated Clinical Breath Analysis and Biomarker DetectionMiscellaneous
Hauschild2013dSchneider, Till
Hauschild, Anne-Christin
Baumbach, Joerg Ingo
Baumbach, Jan
2013An Integrative Clinical Database and Diagnostics Platform for Biomarker Identification and Analysis in Ion Mobility Spectra of Human Exhaled Air
In: Journal of Integrative Bioinformatics [10],
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Hauschild2014Eckel, Sandrah
Baumbach, Jan
Hauschild, Anne-Christin
2014On the importance of statistics in breath analysis - Hope or curse?Unpublished/Draft
Hauschild2014Smolinska, Agnieszka
Hauschild, Anne-Christin
Fijten, Rianne
Dallinga, Jan
Baumbach, Jan
van Schooten, Frederik
2014Current breathomics – A review on data pre-processing techniques and machine learning in metabolomics breath analysisUnpublished/Draft
Hauschild2014aMaurer, Felix
Hauschild, Anne-Christin
Eisinger, Kathrin
Baumbach, Jan
Mayor, Arno
Baumbach, Jörg Ingo
2014MIMA - A software for analyte identification in MCC/IMS chromatograms by mapping accompanying GC/MS measurements
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Herger2011Heger, Eva
Thielen, Alexander
Gilles, Ramona
Obermeier, Martin
Lengauer, Thomas
Kaiser, Rolf
Trapp, Susanna
2011APOBEC3G/F as one possible driving force for co-receptor switch of the human immunodeficiency virus-1
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Hobler2006Hobler, Anna2006Docking of monosaccharids into the wild type and mutants of pyranose 2-oxidase
Universität des Saarlandes
Thesis - Bachelor thesis
HofmannFernandez2007Hofmann, Wolf Peter
Fernandez, B.
Herrmann, E.
Welsch, Christoph
Mihm, Ulrike
Kronenberg, B.
Feldmann, G.
Spengler, U.
Zeuzem, Stefan
Sarrazin, Christoph
2007Somatic hypermutation and mRNA expression levels of the BCL-6 gene in patients with hepatitis C virus-associated lymphoproliferative diseases
In: Journal of Viral Hepatitis [14], 484-491
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HofmannWelsch2007Hofmann, Wolf Peter
Welsch, Christoph
Takahashi, Yoshitomo
Miyajima, Hiroaki
Mihm, Ulrike
Krick, Christoph
Zeuzem, Stefan
Sarrazin, Christoph
2007Identification and in silico characterization of a novel compound heterozygosty associated with hereditary aceruloplasminemia
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Journal Article
Hoinka2011aHoinka, Jan-Malte2011Finding the Hairpin in the Haystack: Towards an High Throughput in Silico Pipeline for Aptamer Motif Identification using SELEX Data
Universität des Saarlandes
Thesis - Masters thesis
HornsteinAlexa2008Hornstein, Max
Hoffmann, Michele J.
Alexa, Adrian
Yamanaka, Masanori
Müller, Mirko
Jung, Volker
Rahnenführer, Jörg
Schulz, Wolfgang A.
2008Protein phosphatase and TRAIL receptor genes as new candidate tumor genes on chromosome 8p in prostate cancer
In: Cancer Genomics & Proteomics [5], 123-136
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Huthmacher2006aHuthmacher, Carola2006Decomposing Protein Networks Into
Domain-Domain Interactions
Eberhard Karls University Tübingen
Thesis - other
Immesberger2005aImmesberger, Stefan2005Attachment IconA Prefiltering Method to Speed up Protein
Structure Prediction
Universität des Saarlandes
Thesis - Bachelor thesis
Ivanova2011aIvanova, Violeta2011Comparison of methods for discovering genomic aberrations relevant for cancer
Universität des Saarlandes
Thesis - Masters thesis
Jaeger2008Sierra, Saleta
Kaiser, Rolf
Thielen, Alexander
Sander, Oliver
Lengauer, Thomas
2008Genotypic Analysis of HIV Co-Receptor Usage
In: Entry Inhibitoren - Neue Formen der HIV-Therapie, 31-39
Part of a Book
Jing2011aJing, Cui2011A comprehensive analysis of the illumina Infinium assay
Universität des Saarlandes
Thesis - Masters thesis
Jung2006aJung, Holger2006Yamada Analyzer - A tool for fast calculation of genomic attributes
Universität des Saarlandes
Thesis - Bachelor thesis
JungeBachelor2012Junge, Alexander2011Unsupervised dissection of cancer types based on genomic, epigenomic and transciptomic features
Universität des Saarlandes
Thesis - Bachelor thesis
Kacprowski2010aKacprowski, Tim2010Analysis of protein complexes and tissue-spedific expression
Universität des Saarlandes
Thesis - Bachelor thesis
Kacprowski2011Kacprowski, Tim2011Disease gene prioritization by combining network information and functional knowledge
Universität des Saarlandes
Thesis - Masters thesis
Kaemper2005Kämper, Andreas
Kaspar, Melanie
Lengauer, Thomas
2005Efficient conformational analysis of synthetic receptors with macrocyclic and fused ring systems
In: Synthetic Receptors 2005: Second World Congress on Synthetic Receptors, O4
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Kaemper2006aKämper, Andreas
Apostolakis, Joannis
Rarey, Matthias
Marian, Christel Maria
Lengauer, Thomas
2006Fully Automated Flexible Docking of Ligands into Flexible Synthetic Receptors Using Forward and Inverse Docking Strategies
In: Journal of Chemical Information and Modeling [46], 903-911
Journal Article
Kaemper2007aKämper, Andreas
Rognan, Didier
Lengauer, Thomas
2007Lead Identification by Virtual Screening
In: Bioinformatics - From Genomes to Therapies 2. Getting at the Inner Workings: Molecular Interactions, 651-704
Part of a Book
KaemperLengauer2001aKämper, Andreas
Apostolakis, Joannis
Rarey, Matthias
Marian, Christel Maria
Lengauer, Thomas
2001Docking of Ligands into Artificial Receptors
In: Electronically Excited Molecules: Structure and Dynamics, 37th Symposium for Theoretical Chemistry, P76
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KaemperLengauer2001bKämper, Andreas
Apostolakis, Joannis
Rarey, Matthias
Marian, Christel Maria
Lengauer, Thomas
2001Docking of Ligands into Artificial ReceptorsMiscellaneous
KaemperLengauer2002aKämper, Andreas
Apostolakis, Joannis
Lengauer, Thomas
2002Docking of Bacterial Cell-Wall Fragments into Glycopeptide Antibiotics
In: From Genes to Drugs via Crystallography: 33rd crytallographic course at the E. Majorana Center, 49
Poster
KaemperLengauer2002bKämper, Andreas
Lengauer, Thomas
2002Docking of Ligands into Molecular Tweezers and Molecular Clips
In: Workshop of the SFB 624 'Templates', ?-?
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KaemperLengauer2003aKämper, Andreas
Lengauer, Thomas
2003Virtual Screening for novel Urease Inhibitors
In: Proceedings of the International Workshop on New Approaches in Drug Design & Discovery, 39
Poster
KaemperLengauer2003bKämper, Andreas
Lengauer, Thomas
2003ECLIPPSE: Environment for Chemical Library Inspection, Pre- and Postprocessing, and Screening Evaluation. User GuideManual
Kaiser2005Kaiser, Rolf
Boussaad, Ibo
Lehmann, C.
Däumer, Martin
Sing, Tobias
Schmeisser, N.
Wyen, C.
Fätkenheuer, Gerd
2005Stable coreceptor usage of HIV-1 in patients with ongoing treatment failure on HAART
In: Proceedings of the 3rd European HIV Drug Resistance Workshop, -
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Kalaghatgi2012aKalaghatgi, Prabhav2012A Phylodynamic Study of HIV Transmission Networks in Europe
Universität des Saarlandes
Thesis - Masters thesis
Kalaghatgi2013Kalaghatgi, Prabhav
Lawyer, Glenn
2013Inter-country mixing in HIV transmission clusters: a pan-European phylodynamics study
In: Abstract Book 11th European HIV & Hepatitis Workshop, 9
Poster
Kalinina2013Kalinina, Olga
Pfeifer, Nico
Lengauer, Thomas
2013Modelling binding between CCR5 and CXCR4 receptors and their ligands suggests the surface electrostatic potential of the co-receptor to be a key player in the HIV-1 tropism
In: Retrovirology [10], 130
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Kalininar2012Kalinina, Olga V.
Oberwinkler, Heike
Glass, Bärbel
Kräusslich, Hans-Georg
Russell, Robert B.
Briggs, John A. G.
2012Computational Identification of Novel Amino-Acid Interactions in HIV Gag via Correlated Evolution
In: PLoS ONE [7], e42468,1-e42468,5
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Kamp2010Kamp, Christel
Wolf, Timo
Bravo, Ignacio G
Kraus, Benjamin
Krause, Birgit
Neumann, Britta
Winskowsky, Gudrun
Thielen, Alexander
Werner, Albrecht
Schnierle, Barbara S
2010Decreased HIV diversity after allogeneic stem cell transplantation of an HIV-1 infected patient: a case report.
In: Virology Journal [7], 55,1-55,9
Electronic Journal Article
Kaspar2005aKaspar, Melanie2005Attachment IconConformational Analysis of Macrocyclic Ring Systems
Universität des Saarlandes
Thesis - Bachelor thesis
Kaspar2006aKaspar, Melanie2006Automated conformational analysis of macrocyclic ring systems
Universität des Saarlandes
Thesis - Masters thesis
Kircher2007Kircher, Martin2007In silico analysis of microRNA genes on human chromosome 14 and mouse chromosome 12
Universität des Saarlandes
Thesis - Masters thesis
Kircher2008Kircher, Martin
Bock, Christoph
Paulsen, Martina
2008Attachment IconStructural conservation versus functional divergence of maternally expressed microRNAs in the Dlk1/Gtl2 imprinting region
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Klingen2012a^Klingen, Thorsten2012Automatic Recombination Analysis Using Recoo and Mebitoo
Universität des Saarlandes
Thesis - Bachelor thesis
Knoepfel2010Knoepfel, Stefanie
Di Giallonardoc, Francesca
Däumer, Martin
Thielen, Alexander
Metzner, Karin J
2011In-depth analysis of G-to-A hypermutation rate in HIV-1 env DNA induced by endogenous APOBEC3 proteins using massively parallel sequencing
In: Journal of Virological Methods [71], 329-338
Journal Article
König2010aKönig, Eva2010Env-wide analysis of coreceptor determining sites and subtype-specific differences in HIV-1
Universität des Saarlandes
Thesis - Bachelor thesis
KoenigMaster2012König, Eva2012Automatic detection of loss of heterozygosity in cancer
Universität des Saarlandes
Thesis - Masters thesis
Kono2009Kono, Ken
Bozek, Kasia
Domingues, Francisco S.
Shioda, Tatsuo
Nakayama, Emi E.
2009Impact of a single amino acid in the variable region 2 of the Old World monkey TRIM5alpha SPRY (B30.2) domain on anti-human immunodeficiency virus type 2 activity
In: Virology [388], 160-168
Journal Article
Korbel2007Korbel, Ulli S.2007Identification of Symmetries in Molecules and Complexes
Universität des Saarlandes
Thesis - Masters thesis
KoserMaster^2012Koser, Sandra2012Reconstructing anecestral methylation states in phylogenetic trees
Universität des Saarlandes
Thesis - Masters thesis
Krier2005aKrier, Markus2005Attachment IconMotif Search in Protein Sequences for Protein
Structure Prediction
Universität des Saarlandes
Thesis - Bachelor thesis
Kuhn2010aKuhn Cuellar, Luis Eugenio2010A probabilistic algorithm for matching protein structures - and its application to detecting functionally relevant patterns
Universität des Saarlandes
Thesis - Masters thesis
Kunert2010aKunert, Lars2011Maximal Common Subgraph DAGs: Theory and Application to Virtual Screening in Drug Development
Universität des Saarlandes
Thesis - PhD thesis
KuroishiBozek2010Kuroishi, Ayumu
Bozek, Katarzyna
Shioda, Tatsuo
Nakayama, Emi E.
2010A single amino acid substitution of the human immunodeficiency virus type 1 capsid protein affects viral sensitivity to TRIM5 alpha.
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Lawyer2009_cerebellumLawyer, Glenn
Nesvåg, Ragnar
Varnäs, Katarina
Okugawa, Gaku
Agartz, Ingrid
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Lawyer2009_lFDRLawyer, Glenn
Ferkingstad, Egil
Nesvåg, Rangan
Varnäs, Katarina
Agartz, Ingrid
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Lawyer2011Lawyer, Glenn
Altmann, André
Thielen, Alex
Zazzi, Maurizio
Sönnerborg, Anders
Lengauer, Thomas
2011HIV-1 mutational pathways under multidrug therapy
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Lawyer2012Lawyer, Glenn
Schülter, Eugen
Kaiser, Rolf
Reuter, Stefan
Oette, Mark
Lengauer, Thomas
2012Attachment IconEndogenous or exogenous spreading of HIV-1 in Nordrhein-Westfalen, Germany, investigated by phylodynamic analysis of the RESINA Study cohort
In: Medical Microbiology and Immunology [201], 259-269
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LengAltThie2009Lengauer, Thomas
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Thielen, Alexander
2009Bioinformatische Unterstützung der Auswahl von HIV Therapien
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2001Centralization: A biologically sensible method for the normalization of gene expression data
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Lengauer2001dClaussen, C.
Buning, Christian
Rarey, Matthias
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2001FlexE: Efficient Molecular Docking Considering Protein Structure Variations
In: Journal of Molecular Biology [308], 377-395
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Hofmann, D.
Lengauer, Thomas
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In: Acta Crystallographica [A57], 442-450
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Lengauer2001fBeerenwinkel, Niko
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Walter, Hauke
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Hoffmann, Daniel
Korn, Klaus
Selbig, Joachim
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In: Was wissen wir, wenn wir das menschliche Genom kennen, 56-62
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Schmidt, B.
Walter, H.
Kaiser, R.
Hoffmann, D.
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Selbig, J.
2001Geno2pheno: a new machine learning approach to predicting phenotypic drug resistance from genotype
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Lengauer2002aHindle, Sally A.
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Zimmer, Ralf
Lengauer, Thomas
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Lengauer2002cFreudenberg, Jan
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Lengauer2002dLengauer, Thomas2002Preface: Special RECOMB 2001 Issue
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Lengauer2002fZien, Alexander
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2002Microarrays: How Many Do You Need?
In: Proceedings of the Sixth Annual Conference on Research in Computational Molecular Biology (RECOMB2002), 321-330
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Lengauer2002gHanisch, Daniel
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Lengauer2003aZien, Alexander
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Lengauer, Thomas
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Lengauer2003cLengauer, Thomas2003Analyzing resistance phenomena in HIV with bioinformatics methods
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Claußen, H.
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Gailus-Durner, V.
Glatting, K.-H.
Gohla, R.
Gößling, F.
Grote, K.
Heidtke, K.
Herrmann, A.
O Keefe, S.
Kießlich, O.
Kolibal, S.
Korbel, J.O.
Lengauer, Thomas
Liebich, I.
van der Linden, M.
Luz, H.
Meissner, K.
von Mering, C.
Mevissen, T.
Mewes, H.-W.
Michael, H.
Mokrejs, M.
Müller, T.
Pospisil, H.
Rarey, Matthias
Reich, J.G.
Schneider, R.
Schomburg, D.
Schulze-Kremer, S.
Schwarzer, K.
Sommer, Ingolf
Springstubbe, S.
Suhai, S.
Thoppae, G.
Vingron, M.
Warfsmann, J.
Werner, T.
Wetzler, D.
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Lengauer2004fHofmann, W.P.
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Merkwirth, Christian
Welsch, Christoph
Lengauer, Thomas
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lengauer2005aLengauer, Thomas
Merkwirth, Christian
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Lengauer2005bHessler, G.
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Evers, A.
Naumann, T.
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Rarey, M.
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Ludwig, Jost
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Lengauer2006cNeumann, Dirk
Kohlbacher, Oliver
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Lengauer, Thomas
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Lengauer2006dSvicher, Valentina
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Santoro, Maria Mercedes
Forbici, Federica
Rodriguez- Barrios, Fátima
Bertoli, Ada
Beerenwinkel, Niko
Bellocchi, Maria Concetta
Gago, Federigo
d´Arminio Monforte, Antonella
Antinori, Andrea
Lengauer, Thomas
Ceccherini-Silberstein, Francesca
Perno, Carlo-Federico
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Lengauer2006eVelagapudi, Vidya R.
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Bousaad, Ibrahim
Sing, Tobias
Beerenwinkel, Niko
Lengauer, Thomas
Schmeisser, Norbert
Wyen, Christoph
Fätkenheuer, Gerd
Kaiser, Rolf
2006Stable coreceptor usage of HIV in patients with ongoing treatment failure on HAART
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Journal Article
Lengauer2006hNeumann, Dirk
Kohlbacher, Oliver
Merkwirth, Christian
Lengauer, Thomas
2006Prediction of percutaneous drug absorption
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Lengauer2007Torda, Andrew E.
Lengauer, Thomas
2006Attachment IconEditorial: Selection of papers of the German Conference of Bioinformatics (GCB) 2005
In: Bioinformatics [22], 1
Journal Article
Lengauer2007eAntes, Iris
Siu, Shirley Weng-In
Lengauer, Thomas
2006Attachment IconDynaPred: A structure and sequence based method for the prediction of MHC class I binding peptide sequence and conformations
In: Bioinformatics [22], 16-24
Journal Article
Lengauer2007gLengauer, Thomas2007Future Trends
In: Bioinformatics - From Genomes to Therapies 3. The Holy Grail: Molecular Function, 1651-1687
Part of a Book
Lengauer2007kLengauer, Thomas2007Introduction
In: Bioinformatics - From Genomes to Therapies 1. The Building Blocks: Molecular Sequences and Structures, 1-24
Part of a Book
Lengauer2007mFlockerzi, Aline
Maydt, Jochen
Frank, Oliver
Ruggieri, Alessia
Maldener, Esther
Seifarth, Wolfgang
Medstrand, Patrik
Lengauer, Thomas
Meyerhans, Andreas
Leib-Mosch, Christine
Meese, Eckart
Mayer, Jens
2007Attachment IconExpression pattern analysis of transcribed HERV sequences is complicated by ex vitvo recombination
In: Retrovirology [4], 39
Journal Article
Lengauer2007m2Lengauer, Thomas2007Bioinformatik
In: Technologiefüher - Grundlagen, Anwendungen, Trends, 4
Part of a Book
Lengauer2007nKetter, Ralf
Urbschat, Steffi
Henn, Wolfram
Feiden, Wolfgang
Beerenwinkel, Niko
Lengauer, Thomas
Steudel, Wolf-Ingo
Zang, Klaus D.
Rahnenführer, Jörg
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In: International Journal of Cancer [121], 1473-1480
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Lengauer2007n2Lengauer, Thomas2007Strategiekonzept "Molekulare Bioinformatik"
In: Informatikforschung in Deutschland, 9
Part of a Book
Lengauer2007oWelsch, Christoph
Albrecht, Mario
Maydt, Jochen
Herrmann, E.
Welker, M.W.
Sarrazin, C.
Scheidig, A.
Lengauer, Thomas
Zeuzem, S.
2007Structural and functional comparison of the non-structural protein 4B of flaviviridae
In: Journal of Molecular Graphics and Modeling [26], 546-557
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Lengauer2007pKupfer, Bernd
Sing, Tobias
Schüffler, Peter
Hall, Rabea
Kurz, Ralf
McKeown, Astrid
Schneweis, Karl-Eduard
Eberl, Wolfgang
Oldenburg, Johannes
Brackmann, Hans H.
Rockstroh, Jürgen K.
Spengler, Ulrich
Däumer, Martin
Kaiser, Rolf
Lengauer, Thomas
Matz, Bertfried
2007Fifteen years of env C2V3C3 evolution in six individuals clonally infected with human immunodeficiency virus type 1
In: Journal of Medical Virology [79], 1629-1639
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Lengauer2007qSteffen, Andreas
Thiele, Carolin
Tietze, Simon
Strassnig, Christian
Kämper, Andreas
Lengauer, Thomas
Wenz, Gerhard
Apostolakis, Joannis
2007Improved cyclodextrin-based receptors for camptothecin by inverse virtual screening
In: Chemistry [13], 6801-6809
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Lengauer2007rCeccherini-Silberstein, Francesca
Svicher, Valentina
Sing, Tobias
Artese, Anna
Santoro, Maria Mercedes
Forbici, Federica
Bertoli, Ada
Alcaro, Stefano
Palamara, Guido
Monforte, Antonella d'Arminio
Balzarini, Jan
Antinori, Andrea
Lengauer, Thomas
Perno, Carlo Federico
2007Attachment IconCharacterization and structural analysis of novel mutations in human immunodeficiency virus type 1 reverse transcriptase involved in the regulation of restistance to nonnucleoside inhibitors
In: Journal of Virology [81], 11507-11519
Journal Article
Lengauer2007sAhlenstiel, G.
Roomp, Kirsten
Däumer, Martin
Nattermann, T.
Vogel, M.
Rockstroh, J.K.
Beerenwinkel, Niko
Kaiser, R.
Nischalke, H.-D.
Sauerbruch, T.
Lengauer, Thomas
Spengler, U.
2007Attachment IconSelective pressures of HLA genotypes and antiviral therapy on human immunodeficiency virus type 1 sequence mutation at a population level
In: Clinical and Vaccine Immunology [14], 1266-1273
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Lengauer2007tSteffen, Andreas
Karasz, Maximilian
Thiele, Carolin
Lengauer, Thomas
Kämper, Andreas
Wenz, Gerhard
Apostolakis, Joannis
2007Combined similarity and QSPR virtual screening for guest molecules of $\beta$-cyclodextrin
In: New Journal of Chemistry [31], 1941-1949
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Lengauer2009xAdams, Ben
McHardy, Alice
Lundegaard, C.
Lengauer, Thomas
2009Viral Bioinformatics
In: Modern Genome Annotation - The BioSapiens Network, 429-452
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Lengauer2010aLengauer, Thomas
Altmann, André
Thielen, Alexander
Kaiser, Rolf
2010Chasing the AIDS Virus
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Lengauer2011aZazzi, M.
Kaiser, R.
Sönnerborg, A.
Struck, D
Altmann, Andre
Prosperi, M.
Rosen-Zvi, M.
Petroczi, A.
Peres, Y.
Schülter, E.
Boucher, C.A.
Brun-Vezinet, F.
Harrigan, R.
Morris, L.
Obermeier, M.
Perno, C.-F.
Phanuphak, P.
Pillay, D
Shafer, R.W.
Vandamme, A.-M.
Van Laethem, K.
Wensing, A.
Lengauer, Thomas
Incardona, F.
2011Prediction of Response to Antiretroviral Therapy by Human Experts and by the EuResist Data-Driven Expert System (the EVE study)
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Kaiser, Rolf
Klein, Rolf
Lengauer, Thomas
Thiele, Bernhard
Thielen, Alexander
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In: BMC Medical Informatics and Decision Making [11], 30,1-30,8
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Lengauer2011cLengauer (ed.)2011Computermodelle in der Wissenschaft - zwischen Analyse, Vorhersage und SuggestionBook
lengauer2012aHeger, Eva
Thielen, Alexander
Gilles, Ramona
Obermeier, Martin
Lengauer, Thomas
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Trapp, Susanna
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Bock, Christoph
Lengauer, Thomas
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In: Evolutionary Genomics : Statistical and Computational Methods, Volume 2, 431-467
In: Methods of Molecular Biology [856], 431-467
Part of a Book
lengauer2012cWelsch, Christoph
Shimakami, Tetsuro
Hartmann, Christoph
Yang, Yan
Domingues, Francisco S.
Lengauer, Thomas
Zeuzem, Stefan
Lemon, Stanley M.
2012Peptidomimetic Escape Mechanisms Arise via Genetic Diversity in the Ligand-Binding Site of the Hepatitis C Virus NS3/4A Serine Protease
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lengauer2012dBock, Christoph
Lengauer, Thomas
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lengauer2012eBozek, Katarzyna
Eckhardt, Manon
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lengauer2012gBozek, K.
Lengauer, Thomas
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Domingues, F.S.
2013Analysis of physicochemical and structural properties determining HIV-1 coreceptor usage
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In: Bioinformatics [28], i589-i595
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Lengauer2012zLengauer, Thomas2012Bioinformatical Assistance of Selecting Anti-HIV Therapies: Where Do We Stand?
In: Intervirology [55], 108-112
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lengauer2013bLengauer, Thomas
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2012Managing drug resistance in cancer: lessons from HIV therapy
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2013Interactive exploration of large genome and epigenome datasets in real time
In: Genome Biology [13], xx
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lengauer2013gSimmer, F.
Brinkmann, A.B.
Assenov, Yassen
Matarese, F.
Kaan, A.
Lengauer, Thomas
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Altucci, L.
Stunnenberg, H.G.
2013Comparative genome-wide DNA methylation analysis of colorectal tumor and matched human tissue
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Mihm, U.
Susser, S.
Welker, M.-W.
Füller, C.
Däumer, M.
Teuber, G.
Wedemeyer, H.
Berg, T.
Lengauer, Thomas
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lengauer2013mSchelhorn, Sven-Eric
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LengauerBioInf2_2007Lengauer (ed.)2007Bioinformatics - From Genomes to Therapies 2. Getting at the Inner Workings: Molecular InteractionsBook
LengauerBioInf3_2007Lengauer (ed.)2007Bioinformatics - From Genomes to Therapies 3. The Holy Grail: Molecular FunctionBook
LengauerISMB2007Lengauer, Rost, Schuster (ed.)2007Proceedings ISMB2007Proceedings
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2009Computerjagd auf das AIDSVIRUS
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LengauerNatRev2006Lengauer, Thomas
Sing, Tobias
2006Bioinformatics-assisted anti-HIV therapy
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LengauerSander2007Lengauer, Thomas
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D'Arrigo, Roberta
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Santoro, Mario
Marconi, Patrizia
Zaccarelli, Mauro
Trotta, Maria Paola
Bellagamba, Rita
Narciso, Pasquale
Antinori, Andrea
Lengauer, Thomas
Perno, Carlo Federico
Ceccherini-Silberstein, Francesca
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lengauerwelsch2010Mihm, Ulrike
Hofmann, W.P.
Welsch, Christoph
Polta, A.
Lengauer, Thomas
Zeuzem, Stefan
Sarrazin, Christoph
Herrmann, E.
2010Effect of ribavirin on the frequency of RNAse L cleavage sites within the hepatitis C viral genome
In: Journal of Viral Hepatitis [17], 217-221
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LengauerZeuzem2007Lengauer, Thomas
Albrecht, Mario
Sarrazin, C.
Mihm, U.
Herrmann, E.
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Sarrazin, U.
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Ackermann, Oliver
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Herrmann, Eva
Hofmann, Wolf Peter
Grigorian, Natalia
Welker, Martin Walter
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Zeuzem, Stefan
Sarrazin, Christoph
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Zhu, Hongbo
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Sierra, S.
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2009Resistenzbestimmung
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Lenguaer2004eHannemann, A.
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Jansen, M.
Putz, H.
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Liu2007Liu, Fang
Tostesen, Eivind
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Hovig, Eivind
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Universität des Saarlandes
Thesis - Masters thesis
LowDong2007Low, Andrew J.
Dong, Winnie
Chan, Dennison
Sing, Tobias
Swanstrom, Ronald
Jensen, Mark
Pillai, Satish
Good, Benjamin
Harrigan, P. Richard
2007Current V3 genotyping algorithms are inadequate for predicting X4 co-receptor usage in clinical isolates
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Lutsik2010aLutsik, Pavlo2010Processing of high-throughput DNA methylation data
Universität des Saarlandes
Thesis - Masters thesis
LutsikFeuerbach2011Lutsik, Pavlo
Feuerbach, Lars
Arand, Julia
Lengauer, Thomas
Walter, Jörn
Bock, Christoph
2011BiQ Analyzer HT: locus-specific analysis of DNA methylation by high-throughput bisulfite sequencing
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Mangels2009Mangels, Miriam2009In Silico Models for the Prediction of Metabolism by Cytochrome P450 Enzymes
Universität des Saarlandes
Thesis - Bachelor thesis
Maydt2002aMaydt, Jochen
Lienhart, Rainer
2002A Fast Method for Training Support Vector Machines With a Very Large Set of Linear Features
In: Proceedings of the International Conference on Multimedia and Expo, 309-312
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Maydt2002bLienhart, Rainer
Maydt, Jochen
2002An Extended Set of Haar-like Features for Rapid Object Detection
In: Proceedings of the International Conference on Image Processing, 900-903
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Maydt2006Maydt, Jochen
Lengauer, Thomas
2006Recco: recombination analysis using cost optimization
In: Bioinformatics [22], 1064-1071
Journal Article
maydt2008Maydt, Jochen2008Analysis of recombination in Molecular Sequence Data
Universität des Saarlandes
Thesis - PhD thesis
Mayr2007Mayr, Gabriele
Domingues, Francisco S.
Lackner, Peter
2007Attachment IconComparative Analysis of Protein Structure Alignments
In: BMC Structural Biology [7], 1
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McGovern2010McGovern, Rachel A
Thielen, Alexander
Mo, Theresa
Dong, Winnie
Woods, Conan K
Chapman, Douglass
Lewis, Marilyn
James, Ian
Heera, Jayvant
Valdez, Hernan
Harrigan, P Richard
2010Population-based V3 genotypic tropism assay: a retrospective analysis using screening samples from the A4001029 and MOTIVATE studies
In: AIDS [24], 2517-2525
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McHardy2009cMcHardy, Alice C.
Adams, Ben
2009The role of genomics in tracking the evolution of influenza A virus
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Meiser2005Meiser, Ina2005Identification of functionally important regions in cytochrome P450 systems and a systematic analysis of various CYP P450 homology models
Universität des Saarlandes
Thesis - Bachelor thesis
Merkwirth2003ECCTDMerkwirth, Christian
Ogorzalek, Maciej
Wichard, Jörg Daniel
2003Attachment IconStochastic Gradient Descent Training of Ensembles of DT-CNN Classifiers for Digit Recognition
In: Proceedings of the 16th European Conference on Circuit Theory and Design ECCTD'03, 337-341
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Merkwirth2004aMerkwirth, Christian
Bröcker, J.
Ogorzalek, Maciej
Wichard, J.D.
2004Finite iteration DT-CNN - new design and operation principles
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Merkwirth2004bMerkwirth, Christian
Mauser, H.
Schulz-Gasch, T.
Roche, O.
Stahl, M.
Lengauer, Thomas
2004Ensemble methods for classification in cheminformatics
In: Journal of Chemical Information and Modeling [44], 1971-1978
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Merkwirth2004dWichard, J.D.
Ogorzalek, Maciej
Merkwirth, Christian
Bröcker, J.
2004Finite iteration DT-CNN with stationary templates
In: Proceedings of the 8th IEEE International Workshop on Cellular Neural Networks and their Applications (CNNA 2004), 459-464
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Mikeska2007Mikeska, Thomas
Bock, Christoph
El-Maarri, Osman
Hübner, Anika
Ehrentraut, Denise
Schramm, Johannes
Felsberg, Jörg
Kahl, Philip
Büttner, Reinhard
Pietsch, Torsten
Waha, Andreas
2007Attachment IconOptimization of Quantitative MGMT Promoter Methylation Analysis Using Pyrosequencing and Combined Bisulfite Restriction Analysis
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Moores2008Moores, Andrew
Thielen, Alexander
Dong, Winnie
Low, Andrew J.
Woods, Conan
Jensen, Mark
Wynhoven, Brian
Chan, Dennison
Glascock, Christopher
Harrigan, P Richard
2008Improved detection of X4 virus by V3 genotyping: application to plasma RNA and proviral DNA
In: Antiviral Therapy, A99
Poster
Moser2009Moser, Dirk
Ekawardhani, Savira
Kumsta, Robert
Palmason, Haukur
Bock, Christoph
Athanassiadou, Zoi
Lesch, Klaus-Peter
Meyer, Jobst
2009Attachment IconFunctional Analysis of a Potassium-Chloride Co-Transporter 3 (SLC12A6) Promoter Polymorphism Leading to an Additional DNA Methylation Site
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Mueller2006Müller, Oliver2007Using Shape Retrieval Techniques for Identifying Similar Protein Binding Sites
Universität des Saarlandes
Thesis - Masters thesis
Mueller2009Müller, Fabian2009Assessing Antibody Neutralization of HIV-1 as an Initial Step in the Search for gp160-based Immunogens
Universität des Saarlandes
Thesis - Masters thesis
MuellerMaster2012Müller, Joachim2012Extracting pathways from biological networks incorporating omics data, introducing a webinterface for KeyPathwayMiner
Universität des Saarlandes
Thesis - Masters thesis
NB2003aBeerenwinkel, Niko2004Methoden zur Interpretation genotypischer Resistenztests
In: Resistenz in der HIV-Therapie : Diagnostik und Management, 66-68
Part of a Book
NB2003bBeerenwinkel, Niko2004Das Arevir-Projekt : neue Wege zur Optimierung von Anti-HIV-Therapien
In: Resistenz in der HIV-Therapie : Diagnostik und Management, 94-98
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Nebot2011Nebot, Victoria
Ye, Min
Albrecht, Mario
Eom, Jae-Hong
Weikum, Gerhard
2011DIDO: a disease-determinants ontology from web sources
In: Proceedings of the 20th International Conference on World Wide Web (WWW 2011), 237-240
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Nickels2005aNickels, Stefan2005Attachment IconGenerating Molecular Hashcodes for
Finding Duplicates in Virtual Screening
Libraries
Universität des Saarlandes
Thesis - Bachelor thesis
Obermeier2008Obermeier, Martin
Sichtig, Nadine
Braun, Patrick
Däumer, Martin
Walter, Hauke
Noah, Christian
Wolf, Eva
Müller, Harm
Stürmer, Martin
Kaiser, Rolf
Thielen, Alexander
2008Determination of HIV-1 coreceptor usage in German patients - comparison of genotypic methods with the TROFILE phenotypic assay
In: Antiviral Therapy, A112
Poster
Obermeier2008GlasgowObermeier, Martin
Berg, Thomas
Sichtig, Nadine
Braun, Patrick
Däumer, Martin
Walter, Hauke
Noah, Christian
Wolf, Eva
Müller, Harm
Stürmer, Martin
Thielen, Alexander
Kaiser, Rolf
2008Determination of HIV-1 co-receptor usage in German patients – comparison of genotypic methods with the TROFILE® phenotypic assay
In: Abstracts of the Ninth International Congress on Drug Therapy in HIV Infection, 123
Poster
Obermeier2012Obermeier, Martin
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Braun, Patrick
Däumer, Martin
Eberle, Josef
Ehret, Robert
Kaiser, Rolf
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Korn, Klaus
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Müller, Harm
Noah, Christian
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Patil2013Patil, Kaustubh Raosaheb2013Genome Signature based Sequence Comparison for Taxonomic Assignment and tree inference
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pauling2012coryneregnetPauling, Josch
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Tauch, Andreas
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pauling2012ehecPauling, Josch
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Tauch, Andreas
Pühler, Alfred
Baumbach, Jan
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PeinadoLengauer2003aPeinado, M.
Lengauer, Thomas
2003Parallel "go with the winners algorithms" in Distributed Memory Models
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Perner2008_bachelorPerner, Juliane2008Attachment IconSemi-Supervised Learning for Predicting Anti-HIV Drug Resistance
Universität des Saarlandes
Thesis - Bachelor thesis
Perner2010aPerner, Juliane2010Finding local similarities in gene expression patterns between partially reprogrammed cells and know cell types using a module network approach
Universität des Saarlandes
Thesis - Masters thesis
Pfeifer2006aPfeifer, Susanne2006Development of a fast
geometry-based screening
compound prefiltering technique
Universität des Saarlandes
Thesis - Bachelor thesis
Pfeifer2012Pfeifer, Nico
Lengauer, Thomas
2012Attachment IconImproving HIV coreceptor usage prediction in the clinic using hints from next-generation sequencing data
In: Bioinformatics [28], i589-i595
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Lengauer, Thomas
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Poster
Pironti2009aPironti, Alejandro2009Probabilistic disease gene prioritization
Universität des Saarlandes
Thesis - Masters thesis
Pironti2011Pironti, Alejandro
Altmann, André
Büch, Joachim
Lengauer, Thomas
2011A Computational Method for Predicting First-Line Antiretroviral Therapy Success
In: Abstract Book. 9th Workshop on HIV & Hepatitis Treatment Strategies & Antiviral Drug Resistance, 94
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Pironti2012Pironti, Alejandro
Lengauer, Thomas
Kaiser, Rolf
Schülter, Eugen
Verheyen, Jens
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In: Abstract Book. 9th Workshop on HIV \& Hepatitis Treatment Strategies \& Antiviral Drug Resistance, 40-41
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Pironti2012hiv12aSierra, Saleta
Dzbowski, Jan Nikolaj
Pironti, Alejandro
Gueney, L
Thielen, Alexander
Reuter, Stefan
Esser, Stefan
Fätkenheuer, Gerd
Lengauer, Thomas
Hider, Dominik
Hoffmann, Daniel
Pfister, Holger
Jensen, Björn
Kaiser, Rolf
2012Optimisation of baseline genotypic testing for safe and efficient maraviroc administration
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Pironti2012hiv12bObermeier, Martin
Camacho, Ricardo
Charpentier, Charlotte
Deschamps, Diane
Eberle, Joseph
Gürtler, Lutz
Ruelle, Jean
Pironti, Alejandro
Brun-Veziet, Francoise
Stürmer, Martin
Kaiser, Rolf
2012HIV2EU: supporting standardized HIV-2 drug resistance interpretation in Europe
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Pironti2012hiv12cSchuelter, Eugen
Lübcke, Nadine
Jensen, Björn
Zazzi, Maurizio
Sönnerborg, Anders
Lengauer, Thomas
Incardona, Francesca
Camacho, Richardo
Schmit, J
Clotet, Bonaventura
Kaiser, Rolf
Pironti, Alejandro
2012Etravirine in protease inhibitor-free antiretroviral combination therapies
In: Journal of the International AIDS Society, 155-156
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Pironti2013Pironti, Alejandro2013HIV-1 fitness landscape models for indinavir treatment pressure using observed evolution in longitudinal sequence data are predictive for treatment failure
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Pironti2013Pironti, Alejandro
Lengauer, Thomas
Pfeifer, Nico
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Pironti2013Pironti, Alejandro
Lengauer, Thomas
Pfeifer, Nico
2013In silico analysis of the effects of sequencing errors on geno2pheno[coreceptor]
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Prosperi2010aProsperi, Mattia C. F.
Rosen-Zvi, Michal
Altmann, Andre
Zazzi, Maurizio
Di Giambenedetto, Simona
Kaiser, Rolf
Schülter, Eugen
Struck, Daniel
Sloot, Peter
van de Vijver, David A.
Vandamme, Anne-Mieke
Sönnerborg, Anders
2010Antiretroviral Therapy Optimisation without Genotype Resistance Testing: A Perspective on Treatment History Based Models
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Rahnenf2001aRahnenführer, Jörg2003Statistical Inference for Clustering Microarrays
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Rahnenf2002aRahnenführer, Jörg
Bozinov, Daniel
2002Unsupervised technique for robust target separation and analysis of DNA microarray spots through adaptive pixel clustering
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Rahnenf2002cBozinov, Daniel
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Burson, Cathy
Spiegelstein, Ofer
2002Automated Grid Alignment for High-Throughput Analysis of Microarray Images (CIIST-02)
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Rahnenf2002dRahnenführer, Jörg2002Hybrid clustering for microarray analysis combining intensity and shape features
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Rahnenf2003aRahnenführer, Jörg2003On preferences of general two-sided tests with applications to Kolmogorov-Smirnov-type tests
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Rahnenführer, Jörg
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Rahnenf2003dRahnenführer, Jörg
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Rahnenfuehrer2003eRahnenführer, Jörg
Futschik, Andreas
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Rahnenfuehrer2003fJames, Jackson
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Leon, FAS
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2003Identification of rat brahma (rBRM), a subunit of SWI/SNF chromatin remodeling complex: Involvement in the differentiation of retinal stem cells/progenitorsMiscellaneous
Rahnenfuehrer2004aRahnenführer, Jörg
Domingues, Francisco S.
Maydt, Jochen
Lengauer, Thomas
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Rahnenfuehrer2004bJames, Jackson
Das, Ani V.
Rahnenführer, Jörg
Ahmad, Iqbal
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Rahnenfuehrer2004cJames, Jackson
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Zhao, Xing
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Ahmad, Iqbal
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Rahnenfuehrer2004dRahnenführer, Jörg
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Universität des Saarlandes
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Rahnenfuehrer2007aRahnenführer, Jörg
Lengauer, Thomas
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Part of a Book
Rahnenfuehrer2007cSchulz, Wolfgang A.
Alexa, Adrian
Jung, Volker
Hader, Christiane
Hoffmann, Michele J.
Yamanaka, Masanori
Fritzsche, Sandy
Wlazlinski, Agnes
Müller, Mirko
Lengauer, Thomas
Engers, Rainer
Florl, Andrea R.
Wullich, Bernd
Rahnenführer, Jörg
2007Attachment IconFactor interaction analysis for chromosome 8 and DNA methylation alterations highlights innate immune response suppression and cytoskeletal changes in prostate cancer
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Romeike, Bernd F.M.
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Henn, Wolfram
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Davis, Sean
Stöckle, Michael
Meltzer, Paul
Wullich, Bernd
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Ramirez2010Ramirez, Fidel2010Tutorial Cytoscape
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Ramirez2012thRamirez, Fidel2012Novel Approaches to the Integration and Analysis of Systems Biology
Universität des Saarlandes
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Ray2003Jose, Joachim
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Reimer2006Reimer, Daniela2006Docking studies to investigate the effect of correlated mutations in the HIV-Protease on the drug resistance of HIV
Universität des Saarlandes
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Reppas2012Reppas, Andreas
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Faetkenheuer, Gerd
Pfister, Herbert
Haeussinger, Dieter
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Reuter2011Reuter, Kerstin2011Estimating and Using the Uncertainty in the Phenotypic Resistance Assay of the Hepatitis B Virus to Improve IC-50 Prediction from Genotype
Universität des Saarlandes
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Reuter2012aReuter, Stefan
Oette, Mark
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Lengauer, Thomas
Fätkenheuer, Gerd
Rockstroh, Jürgen
Knechten, Heribert
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Rhee2010Rhee, Soo-Yon
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roettger2012densityRöttger, Richard
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roettger2012littleRöttger, Richard
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roettger2012onlineRöttger, Richard
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Peres, Yardena
Incardona, Francesca
Kaiser, Rolf
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Lengauer, Thomas
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RosenZvi2008IDRWRosen-Zvi, Michal
Schülter, Eugen
Altmann, Andre
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Sönnerborg, Anders
Oette, Mark
Lengauer, Thomas
Kaiser, Rolf
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Rost2012Rost, Burkhard
Gaasterland, Terry
Lengauer, Thomas
Linial, Michal
Markel, Scott
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Kashima, Hisashi
Tsuda, Koji
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Saigo2011Saigo, Hiroto
Altmann, André
Bogojeska, Jasmina
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Lengauer, Thomas
2011Attachment IconLearning from past treatments and their outcome improves prediction of In Vivo response to anti-HIV therapy
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Sander2004Sander, Oliver2004Local sequence-structure relationships in proteins
Friedrich-Alexander-Universität Erlangen-Nürnberg
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Sander2006Sander, Oliver
Sommer, Ingolf
Lengauer, Thomas
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Sander2007Sander, Oliver
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Sommer, Ingolf
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Cheung, Peter K.
Harrigan, P. Richard
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2007Attachment IconStructural Descriptors of gp120 V3 Loop for the Prediction of HIV-1 Coreceptor Usage
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Sander2008EDRWSander, Oliver
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SanderDiss2008Sander, Oliver2008Structural Descriptors for the Analysis of Protein Structure, Function, and Evolution
Universität des Saarlandes
Thesis - PhD thesis
Sandoval2013Sandoval, Juan
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Schelhorn2007Schelhorn, Sven-Eric2007Prediction of Domain and Motif Interactions from Protein Networks
Universität des Saarlandes
Thesis - Masters thesis
Schlicker2004aSchlicker, Andreas2004Attachment IconAutomated Differential Analysis of Proteomes
Universität des Saarlandes
Thesis - Bachelor thesis
Schlicker2005Schlicker, Andreas2005A Global Approach to Comparative Genomics: Comparison of Functional Annotation over the Taxonomic Tree
Universität des Saarlandes
Thesis - Masters thesis
Schlicker2007Schlicker, Andreas
Rahnenführer, Jörg
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Lengauer, Thomas
Domingues, Francisco S.
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Schlicker2010Schlicker, Andreas2010Attachment IconOntology-based Similarity Measures and their Application in Bioinformatics
Universität des Saarlandes
Thesis - PhD thesis
Schlicker_BMCBioinformatics_2006Schlicker, Andreas
Domingues, Francisco S.
Rahnenführer, Jörg
Lengauer, Thomas
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Schüffler2008Schüffler, Peter2008MethMarker – A toolkit for design, optimization and validation of DNA methylation biomarkers for cancer diagnosis and therapy optimization
Universität des Saarlandes
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Schulter2011Schülter, Eugen
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Balduin, Melanie
Reuter, Stefan
Rockstroh, Jürgen
Fätkenheuer, Gerd
Esser, Stefan
Lengauer, Thomas
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Lengauer, Thomas
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Svicher, Valentina
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Kaiser, Rolf
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Universität des Saarlandes
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Speicher2010Speicher, Nora K.2010Network analysis of viral host factors
Universität des Saarlandes
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SpeicherMaster2012Speicher, Nora2012Towards the identification of cancer subtypes by integrative clustering of molecular data
Universität des Saarlandes
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Steffen2004Steffen, Andreas
Kämper, Andreas
Lengauer, Thomas
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Steffen2004aSteffen, Andreas
Kämper, Andreas
Lengauer, Thomas
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Steffen2005Steffen, Andreas
Kämper, Andreas
Lengauer, Thomas
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In: Synthetic Receptors 2005: Second World Congress on Synthetic Receptors, O7
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Steffen2006aSteffen, Andreas
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Steffen2006bSteffen, Andreas
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Lengauer, Thomas
2006Virtual screening for guest molecules of a biosensor
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steffen2008aSteffen, Andreas2008Computational Approaches in Supramolecular Chemistry with a special Focus on Virtual Screening
Universität des Saarlandes
Thesis - PhD thesis
Stöckel2008Stöckel, Daniel2008Protein Surface Remeshing and Characterisation Using Morse-Smale Complexes
Universität des Saarlandes
Thesis - Bachelor thesis
StoeckelMaster2010Stöckel, Daniel2010History Based HIV Therapy Outcome Prediction
Universität des Saarlandes
Thesis - Masters thesis
Sun2011Kumar, Vinod
Sun, Peng
Vamathevan, Jessica
Li, Yong
Ingraham, Karen
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2011Comparative Genomics of Klebsiella pneumoniae Strains with Different Antibiotic Resistance Profiles
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Susser2009Susser, Simone
Welsch, Christoph
Wang, Yalan
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Karey, Ursula
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Tong, Xiao
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Sarrazin, Christoph
2009Characterization of resistance to the protease inhibitor boceprevir in hepatitis C virus-infected patients.
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Svicher2005aSvicher, Valentina
Ceccherini-Silberstein, Francesca
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Santoro, Maria Mercedes
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Bellochi, M.C.
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2005A highly ordered network of HIV-1 RT mutations regulates the continuous escape from antiviral drugs
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Bellocchi, M. C.
Giannella, S.
Bertoli, A.
D'Arminio Monforte, A.
Antinori, A.
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2005Additional Mutations in HIV-1 Reverse Transcriptase are Involved in the Highly Ordered Regulation of NRTI Resistance
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Svicher2011Svicher, Valentina
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Mercurio, Fabio
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Wittkop, Linda
Bertoli, Ada
Micheli, Valeria
Gubertini, Guido
Longo, Roberta
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Gallinaro, Valentina
Marino, Nicoletta
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De Sanctis, Giuseppe Maria
Fleury, Hervè
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Dong, Winnie
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Jensen, Mark A.
Wynhoven, Brian
Chan, Dennison
Glascock, Christopher
Harrigan, P. Richard
2010Improved detection of CXCR4-using HIV by V3 genotyping: application of population-based and "deep" sequencing to plasma RNA and proviral DNA
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Swenson2010aSwenson, Luke C.
Boehme, Richard
Thielen, Alexander
McGovern, Rachel A.
Harrigan, P. Richard
2010Genotypic determination of HIV-1 tropism in the clinical setting
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Swenson2011Swenson, Luke C.
Mo, Theresa
Dong, Winnie W. Y.
Zhong, Xiaoyin
Woods, Conan K.
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Thielen, Alexander
Chapman, Douglass
Lewis, Marilyn
James, Ian
Heera, Jayvant
Valdez, Hernan
Harrigan, P. Richard
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Swenson2011bSwenson, Luke C
Mo, Theresa
Dong, Winnie WY
Zhong, Xiaoyin
Woods, Conan K
Thielen, Alexander
Jensen, Mark A
Knapp, David JHF
Chapman, Douglass
Lewis, Marilyn
James, Ian
Heera, Jayvant
Valdez, Hernan
Harrigan, P Richard
2011Deep V3 sequencing for HIV type 1 tropism in treatment-naive patients: a reanalysis of the MERIT trial of maraviroc.
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S.Domingues2006Domingues, Francisco S.
Lengauer, Thomas
2007Inferring Protein Function from Protein Structure
In: Bioinformatics - From Genomes to Therapies 3. The Holy Grail: Molecular Function, 1211-1252
Part of a Book
Talwar2003Talwar, Priti
Lengauer, Thomas
Wittmann, Christoph
Mangadu, Vidya
Heinzle, Elmar
2003Towards cellular function through metabolite screening
In: Proceedings of the 3rd Annual Conference on Metabolic Profiling: Pathways in Discovery, 7
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Talwar2003aTalwar, Priti
Wittmann, Christoph
Lengauer, Thomas
Heinzle, Elmar
2003Software tool for automated processing of 13C labeling data from mass spectrometry data
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Talwar2004aTalwar, Priti
Lengauer, Thomas
Rahnenführer, Jörg
Velagapudi, VR
Wittmann, Christoph
Heinzle, Elmar
2004Computational Methods For Metabolite Screening
In: Proceedings of the 12th International Conference on Intelligent Systems for Molecular Biology + 3rd European Conference on Computational Biology (ISMB/ECCB 2004), 1
Poster
Talwar2004bTalwar, Priti
Lengauer, Thomas
Rahnenführer, Jörg
Velagapudi, VR
Wittmann, Christoph
Heinzle, Elmar
2004Computational Methods For Metabolite Screening
In: Proceedings of the 5th International Conference on Systems Biology (ICSB 2004), 1
Poster
Talwar2005Talwar, Priti
Lengauer, Thomas
Rahnenführer, Jörg
Wittmann, Christoph
Velagapudi, VR
Heinzle, Elmar
2005Computational Methods for Protein Function Prediction using Metabolomics Data
In: Proceedings of International Workshop on Systems Biology 2005, 1
Poster
Talwar2006Talwar, Priti
Lengauer, Thomas
Wittmann, Christoph
Velagapudi, V. R.
Heinzle, Elmar
2006Development of Computational Methods for Analysis of Metabolic Profiling Data
In: Proceedings of International Conference on Systems Biology (ICSB 2006), Japan, 42-42
Proceedings Article
Talwar2006aTalwar, Priti
Lengauer, Thomas
Rahnenführer, Jörg
Heinzle, Elmar
Velagapudi, VR
Wittmann, Christoph
2005Towards computational analysis of metabolic profiling data for protein function prediction.
In: Proceedings of the Yeast Systems Biology, 6th International Conference on Systems Biology (ICSB 2005), 1
Poster
talwar2008Talwar, Priti2008Development of Computational Methods for Metabolic Network Analysis based on Metabolomics Data
Universität des Saarlandes
Thesis - PhD thesis
Thielen2006Thielen, Alexander2006Prediction of linear B-cell epitopes and MHC class II binding peptides
Eberhardt-Karls-Universität Tübingen
Thesis - Masters thesis
Thielen2008EDRWThielen, Alexander
Sichtig, Nadine
Braun, Patrick
Däumer, Martin
Walter, Hauke
Noah, Christian
Wolf, Eva
Müller, Harm
Stürmer, Martin
Lengauer, Thomas
Kaiser, Rolf
Obermeier, Martin
2009Performance of genotypic coreceptor measurement using geno2pheno[coreceptor] in B- and non-B HIV subtypes in a large cohort of therapy-experienced patients in Germany
In: Reviews in Antiviral Therapy, 99-99
Poster
Thielen2008EntryThielen, Alexander
Kaiser, Rolf
Lengauer, Thomas
2008Improving HIV-1 coreceptor usage prediction from genotype with regions outside of V3
In: Reviews in Antiviral Therapy, 81-82
Poster
Thielen2008IDRWThielen, Alexander
Harrigan, P Richard
Low, Andrew J.
Moores, A
Altmann, Andre
Bozek, Kasia
Heger, Eva
Sichtig, Nadine
Kaiser, Rolf
Lengauer, Thomas
2008Improved genotypic prediction of HIV-1 coreceptor usage by incorporating V2 loop sequence variation
In: Antiviral Therapy, A100
Poster
Thielen2009IDRWThielen, Alexander
Altmann, André
Bogojeska, Jasmina
Kaiser, Rolf
Lengauer, Thomas
2009Estimating evolutionary pathways to 7CXCR4 usage from cross-sectional data
In: Abstracts presented at the XVIII International HIV Drug Resistance Workshop : Basic Principles & Clinical Implications, A16-A16
Poster
Thielen2010Thielen, Alexander
Sichtig, Nadine
Kaiser, Rolf
Lam, Jeffrey
Harrigan, P. Richard
Lengauer, Thomas
2010Improved prediction of HIV-1 coreceptor usage with sequence information from the second hypervariable loop of gp120
In: Journal of Infectious Diseases [202], 1435-1443
Journal Article
Thielen2010EDRWThielen, Alexander
Lengauer, Thomas
Harrigan, P Richard
Swenson, Luke
Dong, Winnie WY
McGovern, Rachel A
Lewis, Marilyn
James, Ian
Heera, Jayvant
Valdez, Hernan
2010Mutations within GP41 are correlated with coreceptor tropism but do not substantially improve coreceptor usage prediction
In: Reviews in Antiviral Therapy & Infectious Diseases, 47-47
Poster
Thielen2010gp41Thielen, Alexander
Lengauer, Thomas
Swenson, Luke C
Dong, Winnie W.Y.
McGovern, Rachel A
Lewis, Marilyn
James, Ian
Heera, Jayvant
Valdez, Hernan
Harrigan, P Richard
2011Mutations in gp41 are correlated with coreceptor tropism but do not improve prediction methods substantially
In: Antiviral Therapy [16], 319-328
Journal Article
Thielen2011Thielen, Alexander
Lengauer, Thomas
2012Geno2pheno[454]: A Web Server for the Prediction of HIV-1 Coreceptor Usage from Next-Generation Sequencing Data
In: Intervirology [55], 113-117
Journal Article
Thielen2011dissThielen, Alexander2011Genotypic Analysis of HIV-1 Coreceptor Usage
Universität des Saarlandes
Thesis - PhD thesis
Tolosi2006Tolosi, Laura2006Analysis of Array CGH Data for the Estimation of Genetic Tumor Progression
Universität des Saarlandes
Thesis - Masters thesis
tolosi2009Sos, Martin L.
Michel, Kathrin
Zander, Thomas
Weiss, Jonathan
Frommolt, Peter
Pfeifer, Martin
Li, Danan
Ullrich, Roland
Koker, Mirjam
Fischer, Florian
Shimamura, Takeshi
Rauh, Daniel
Mermel, Craig
Fischer, Stefanie
Stückrath, Isabel
Heynck, Stefanie
Beroukhim, Rameen
Lin, William
Winckler, Wendy
Shah, Kinjal
LaFramboise, Thomas
Moriarty, Whei F.
Hanna, megan
Tolosi, Laura
Rahnenführer, Jörg
Verhaak, Roel
Chiang, Derek
Getz, Gad
Hellmich, Martin
Wolf, Jürgen
Girard, Luc
Peyton, Michael
Weir, Barbara A.
Chen, Tzu-Hsiu
Greulich, Heidi
Barretina, Jordi
Shapiro, Geoffrey I.
Garraway, Levi A.
Gazdar, Adi F.
Minna, John D.
Meyerson, Matthew
Wong, Kwok-Kin
Thomas, Roman K.
2009Predicting drug susceptibility of non-small cell lung cancers based on genetic lesions
In: Journal of Clinical Investigation [119], 1727-1740
Journal Article
Tolosi2011Tolosi, Laura
Lengauer, Thomas
2011Classification with correlated features: unreliability of feature ranking and solutions
In: Bioinformatics [27], 1986-1994
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Tolosi2012thTolosi, Laura2012Finding Regions of Aberrant DNA Copy Number Associated With Tumor Phenotype
Universität des Saarlandes
Thesis - PhD thesis
Trajkovski2004Trajkovski, Igor2004Analysis of protein binding pocket flexibility
Universität des Saarlandes
Thesis - Masters thesis
Verheyen2006Verheyen, Jens
Litau, Elena
Sing, Tobias
Däumer, Martin
Balduin, Melanie
Oette, Mark
Fätkenheuer, Gerd
Rockstroh, Jürgen K.
Schuldenzucker, Ulrike
Hoffmann, Daniel
Pfister, Herbert
Kaiser, Rolf
2006Compensatory mutations at the HIV cleavage sites p7/p1 and p1/p6-gag in therapy-naive and therapy-experienced patients
In: Antiviral Therapy [11], 879-887
Journal Article
Verheyen2008aVerheyen, Jens
Altmann, Andre
Knops, Elena
Schülter, Eugen
Sichtig, Nadine
Reuter, Stefan
Fätkenheuer, Gerd
Pfister, Herbert
Kaiser, Rolf
2008Relevance of HIV gag cleavage site mutations in failures of protease inhibitor therapies
In: Antiviral Therapy, A53
Poster
Volkamer2006aVolkamer, Andrea2005Attachment IconImplementation of a method to filter
out compounds with toxic, reactive
and unsuitable functional groups
Universität des Saarlandes
Thesis - Bachelor thesis
Volkamer2007Volkamer, Andrea2007Automated generation of pharmacophore type constraints to improve FlexX docking
Universität des Saarlandes
Thesis - Masters thesis
vonOehsen2003von Öhsen, Niklas
Sommer, Ingolf
Zimmer, Ralf
2003Profile-Profile Alignment: A Powerful Tool For Protein Structure Prediction
In: Pacific Symposium on Biocomputing, PSB 2003, 252-263
Proceedings Article
Weimann2009aWeimann, Aaron2009Using multidimensional Scaling for visualizing similarities of proteins
Universität des Saarlandes
Thesis - Bachelor thesis
Weimann2011aWeimann, Aaron2011Functional Profiling in Metagenomics
Universität des Saarlandes
Thesis - Masters thesis
Weinhold2006Weinhold, Nils2006Inference of Protein Function based on Functionally Conserved Regions in Sequence and Structure Space
Universität des Saarlandes
Thesis - Masters thesis
Weinhold2008Weinhold, Nils
Sander, Oliver
Domingues, Francisco S.
Lengauer, Thomas
Sommer, Ingolf
2008Attachment IconLocal function conservation in sequence and structure space
In: PLoS Computational Biology [4], e1000105
Journal Article
Weiss2005aWeiss, Julia2005Attachment IconGenerating Frequency Profiles from Multiple
Structure Alignments
Universität des Saarlandes
Thesis - Bachelor thesis
Weisser2007Weisser, Hendrik2007Estimating the local variance of protein structure models
Universität des Saarlandes
Thesis - Masters thesis
Weisser2010aWeisser, Hendrik
Altmann, André
Sierra, Saleta
Incardona, Francesca
Struck, Daniel
Sönnerborg, Anders
Kaiser, Rolf
Zazzi, Maurizio
Tschochner, Monika
Walter, Hauke
Lengauer, Thomas
2010Only Slight Impact of Predicted Replicative Capacity for Therapy Response Prediction
In: PLoSOne [5], e9044,1-e9044,10
Electronic Journal Article
Welker2011Welker, M.-W.
Welsch, Christoph
Ochs, D.
Hofmann, W. P.
Herrmann, E.
Piiper, A.
Hartmann, R. W.
Zeuzem, S.
Sarrazin, C.
Kronenberger, Bernd
2011Comparison of Envelope 2 CD81 binding regions in PBMC-derived versus serum-derived hepatitis C virus isolates: higher conservation of CD81 region 2 in PBMC isolates
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Journal Article
Welsch2011Hofmann, Wolf Peter
Chung, Tje Lin
Osbahr, Carola
Susser, Simone
Karey, Ursel
Mihm, Ulrike
Welsch, Christoph
Lötsch, Jörn
Sarrazin, Christoph
Zeuzem, Stefan
Herrmann, Eva
2011Impact of ribavirin on HCV replicon RNA decline during treatment with interferon-α and the protease inhibitors boceprevir or telaprevir
In: Antiviral Therapy [16], 695-704
Journal Article
Welsch2012zWelsch, Christoph
Schweizer, Sabine
Shimakami, Testsuro
Domingues, Francisco S.
Kim, Seungtaek
Lemon, Stanley, M.
Antes, Iris
2012Ketoamide Resistance and Hepatitis C Virus Fitness in Val55 Variants
of the NS3 Serine Protease
In: Antimicrobial Agents and Chemotherapy [56], 1907-1915
Journal Article
Wemmert05Wemmert, Silke
Ketter, Ralf
Rahnenführer, Jörg
Beerenwinkel, Niko
Strowitzki, Martin
Feiden, Wolfgang
Hartmann, Christian
Lengauer, Thomas
Stockhammer, Florian
Zang, Klaus D.
Meese, Eckart
Steudel, Wolf-Ingo
von Deimling, Andreas
Urbschat, Steffi
2005Attachment IconPatients with high grade gliomas harboring delections of chromosomes 9p and 10q benefit from temozolomide treatment
In: Neoplasia [7], 883-893
Journal Article
Wittkop2010Wittkop, Tobias
Emig, Dorothea
Lange, Sita
Rahmann, Sven
Albrecht, Mario
Morris, John H.
Böcker, Sebastian
Stoye, Jens
Baumbach, Jan
2010Partitioning biological data with transitivity clustering
In: Nature Methods [7], 419-420
Journal Article
Wittkop2011Wittkop, Tobias
Emig, Dorothea
Truss, Anke
Albrecht, Mario
Böcker, Sebastian
Baumbach, Jan
2011Comprehensive cluster analysis with Transitivity Clustering
In: Nature Protocols [6], 285-295
Journal Article
Wohlers2010Wohlers, Inken
Domingues, Francisco S.
Klau, Gunnar W.
2010Towards optimal alignment of protein structure distance matrices
In: Bioinformatics [26], 2273-2280
Journal Article
Xi2011Xi, Yuanxin
Bock, Christoph
Müller, Fabian
Sun, Deqiang
Meissner, Alexander
Li, Wei
2011RRBSMAP: A Fast, Accurate and User-friendly Alignment Tool for Reduced Representation Bisulfite Sequencing
In: Bioinformatics [28], 430-432
Journal Article
Xi2012Xi, Yuanxin
Bock, Christoph
Müller, Fabian
Sun, Deqiang
Meissner, Alexander
Li, Wei
2012RRBSMAP: a fast, accurate and user-friendly alignment tool for reduced representation bisulfite sequencing
In: Bioinformatics [28], 430-432
Journal Article
Yalak2004aYalak, Garif2005Attachment IconAnalysis of Mutations in the Death Domains, Death Effector Domains, Caspase
Recruitment Domains, and Pyrin Domains
Universität des Saarlandes
Thesis - Bachelor thesis
Yamanishir2011Yamanishi, Yoshihiro
Pauwels, Edouard
Saigo, Hiroto
Stovent, Veronique
2011Extracting Sets of Chemical Substructures and Protein Domains Governing Drug-Target Interactions
In: Journal of Chemical Information and Modeling [51], 1183-1194
Journal Article
Yin05Yin, Junming
Beerenwinkel, Niko
Rahnenführer, Jörg
Lengauer, Thomas
2006Attachment IconModel Selection for Mixtures of Mutagenetic Trees
In: Statistical Applications in Genetics and Molecular Biology [5], Article 17
Journal Article
Yin2005aYin, Junming2005Model Selection for Mixtures of Mutagenetic Trees
Universität des Saarlandes
Thesis - Masters thesis
Zacharek2011Zacharek, Sima J.
Fillmore, Christine M.
Lau, Allison N.
Gludish, David W.
Chou, alan
Ho, Joshua W. K.
Zamponi, Raffaella
Gazit, Roi
Bock, Christoph
Jäger, Natalie
Smith, Zachary D.
Kim, Tae-min
Saunders, Arven H.
Wong, Janice
Lee, Joo-Hyeon
Roach, Rebecca R.
Rossi, Derrick J.
Meissner, Alex
Gimelbrant, Alexander A.
Park, Peter J.
Kim, Carla F.
2011Lung stem cell self-renewal relies on BMI1-dependent control of expression at imprinted loci
In: Cell Stem Cell [9], 272-280
Journal Article
Zazzi2010aZazzi, Maurizio
Kaiser, Rolf
Sönnerborg, Anders
Struck, Daniel
Altmann, Andre
Prosperi, Mattia C. F.
Rosen-Zvi, Michal
Petroczi, Andrea
Peres, Yardena
Schülter, Eugen
Boucher, Charles
Brun-Vezinet, Francoise
Harigan, Richard
Morris, Lynn
Obermeier, Martin
Perno, Federico
Shafer, Robert
Vandamme, Anne-Mieke
van Laethem, Kristel
Wensing, Annemarie
Lengauer, Thomas
Incardona, Francesca
2010Prediction of Response to Antiretroviral Therapy by Human Experts and by the EuResist Data-Driven Expert System (the EVE Study)
In: HIV Medicine [Early View], 1-8
Electronic Journal Article
Zazzi2012Zazzi, Maurizio
Incardona, Francesca
Rosen-Zvi, Michal
Prosperi, Mattia
Lengauer, Thomas
Altmann, Andre
Sonnerborg, Anders
Lavee, Tamar
Schülter, Eugen
Kaiser, Rolf
2012Predicting Response to Antiretroviral Treatment by Machine Learning:
The EuResist Project
In: Intervirology [55], 123-127
Journal Article
ZazziEU2006Zazzi, Maurizio
Aharoni, Ehud
Altmann, Andre
Baszó, Fulop
Bidgood, Penny
Borgulya, Gabór
Denholm-Prince, J
Fielder, M
Kaiser, Rolf
Kent, Carmel
Lengauer, Thomas
Nepusz, T
Neuvirth, Hanni
Peres, Yardena
Petroczi, Andrea
Prosperi, Mattia
Romano, L
Rosen-Zvi, Michal
Schülter, Eugen
Sing, Tobias
Sonnerborg, Andras
Thompson, R
Ulivi, G
Zalány, L
Incardona, Francesca
2007EuResist: exploration of multiple modeling techniques for prediction of response to treatment
In: Proceedings of the 5th European HIV Drug Resistance Workshop, -
Poster
ZeidlerBachelor2012Zeidler, Michael2012Cloudbasierte Analyse von viralen Sequenzdaten der neuesten Generation
Universität des Saarlandes
Thesis - Bachelor thesis
Zhang2009Zhang, Yingying
Rohde, Christian
Tierling, Sascha
Jurkowski, Tomasz P.
Bock, Christoph
Santacruz, Diana
Ragozin, Sergey
Reinhardt, Richard
Groth, Marco
Walter, Jörn
Jeltsch, Albert
2009Attachment IconDNA methylation analysis of chromosome 21 gene promoters at single base pair and single allele resolution
In: PLoS Genetics [5], e1000438:1-e1000438:15
Electronic Journal Article
Zhu2005Zhu, Hongbo
Domingues, Francisco S.
Sommer, Ingolf
Lengauer, Thomas
2005Analysis and prediction of protein-protein interaction types
In: 4th European Conference on Computational Biology (ECCB05), 1
Poster
Zhu2006Zhu, Hongbo
Domingues, Francisco S.
Sommer, Ingolf
Lengauer, Thomas
2006NOXclass: prediction of protein-protein interaction types
In: BMC Bioinformatics [7], 1-15
Electronic Journal Article
Zhu2008Zhu, Hongbo
Sommer, Ingolf
Lengauer, Thomas
Domingues, Francisco S.
2008Attachment IconAlignment of Non-Covalent Interactions at Protein-Protein Interfaces
In: PLoS ONE [3], e1926
Journal Article
Zhu2010aZhu, Hongbo2010Characterization, classification and alignment of protein-protein interfaces
Universität des Saarlandes
Thesis - PhD thesis
Ziller2011Ziller, Michael J.
Müller, Fabian
Liao, Jing
Zhang, Yingying
Gu, Hongcang
Bock, Christoph
Boyle, Patrick
Epstein, Charles B.
Bernstein, Bradley E.
Lengauer, Thomas
Gnirke, Andreas
Meissner, Alexander
2011Genomic distribution and inter-sample variation of non-CpG methylation across human cell types
In: PLoS Genetics [17], e1002389,1-e1002389,15
Electronic Journal Article
Ziller2013Ziller, Michael J.
Gu, Hongcang
Müller, Fabian
Donaghey, Julie
Tsai, Linus T.-Y.
Kohlbacher, Oliver
De Jager, Philip L.
Rosen, Evan D.
Bennett, David A.
Bernstein, Bradley E.
Gnirke, Andreas
Meissner, Alexander
2013Charting a dynamic DNA methylation landscape of the human genome
In: Nature [500], 477–481
Journal Article
Zimmer2006aZimmer, Tobias2006Functional Site Scaffolds
Universität des Saarlandes
Thesis - Bachelor thesis
Zotenko2008Zotenko, Elena
Mestre, Julian
O'Leary, Dianne
Przytycka, Teresa
2008Why Do Hubs in the Yeast Protein Interaction Network Tend To Be Essential: Reexamining the Connection between the Network Topology and Essentiality
In: PLoS Computational Biology [4], e1000140
Journal Article
?Ifrim, Georgiana2005A Bayesian Learning Approach to Concept-Based Document Classification
Universität des Saarlandes
Thesis - Masters thesis
?Johannsen, Daniel2010Random Combinatorial Structures and Randomized Search Heuristics
Universität des Saarlandes
Thesis - PhD thesis

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