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MPI-INF D3 Publications

MPI-INF D3 Publications

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#YearAuthor(s) [non member]TitleType
1
Hide details for Eckhardt, ManonEckhardt, Manon
2012Bozek, Katarzyna
[Eckhardt, Manon]
[Sierra, Saleta]
[Kaiser, Rolf]
[Kräusslich, Hans-Georg]
[Müller, Barbara]
Lengauer, Thomas
An expanded model of HIV cell entry phenotype based on multi-parameter single-cell data
In: Retrovirology [9], 60.1-60.15
Journal Article
1
Hide details for Egashira, ToruEgashira, Toru
2002[Nishida, Yoshiharu]
[Hirano, Kenichi]
[Tsukamoto, Kosuke]
[Nagano, Makoto]
[Ikegami, Chiaki]
Roomp, Kirsten
[Ishihara, Mitsuaki]
[Sakane, Naoki]
[Zhang, Zhongyan]
[Tsujii, Ken-ichi]
[Matsuyama, Akifumi]
[Ohama, Tohru]
[Matsuura, Fumihiko]
[Ishigami, Masato]
[Sakai, Naohiko]
[Hiraoka, Hisatoyo]
[Hattori, Hiroaki]
[Wellington, Cheryl L.]
[Yoshida, Yoshihide]
[Misugi, Susumu]
[Hayden, Michael R.]
[Egashira, Toru]
[Yamashita, Shizuya]
[Matsuzawa, Yuji]
Expression and Functional Analyses of Novel Mutations ot ATP-Binding Cassette Transporter-1 in Japanese Patients with High-Density Lipoprotein Deficiency
In: Biochemical and Biophysical Research Communications [290], 713-721
Journal Article
2
Hide details for Eggan, KevinEggan, Kevin
2012[Mekhubad, Shila]
Bock, Christoph
[de Boer, A. Sophie]
[Kiskinis, Evangelos]
[Meissner, Alexander]
[Eggan, Kevin]
Erosion of dosage compensation impacts human iPSC disease modeling
In: Cell Stem Cell [10], 595-609
Journal Article
2011Bock, Christoph
[Kiskinis, Evangelos]
[Verstappen, Griet]
[Gu, Hongcang]
[Boulting, Gabriella]
[Smith, Zachary D.]
[Ziller, Michael]
[Croft, Gist F.]
[Amoroso, MacKenzie W.]
[Oakley, Derek H.]
[Gnirke, Andreas]
[Eggan, Kevin]
[Meissner, Alexander]
Reference Maps of Human ES and iPS Cell Variation Enable High-Throughput Characterization of Pluripotent Cell Lines
In: Cell [144], 439-452
Journal Article
1
Hide details for Ehlers, StefanEhlers, Stefan
2005[Valentonyte, Ruta]
[Hampe, Jochen]
[Huse, Klaus]
[Rosenstiel, Philip]
Albrecht, Mario
[Stenzel, Annette]
[Nagy, Marion]
[Gaede, Karoline I.]
[Franke, Andre]
[Haesler, Robert]
[Koch, Andreas]
Lengauer, Thomas
[Seegert, Dirk]
[Reiling, Norbert]
[Ehlers, Stefan]
[Schwinger, Eberhard]
[Platzer, Mathias]
[Krawczak, Michael]
[Müller-Quernheim, Joachim]
[Schürmann, Manfred]
[Schreiber, Stefan]
Sarcoidosis is associated with a truncating splice site mutation in BTNL2
In: Nature Genetics [37], 357-364
Journal Article
1
Hide details for Ehrentraut, DeniseEhrentraut, Denise
2007[Mikeska, Thomas]
Bock, Christoph
[El-Maarri, Osman]
[Hübner, Anika]
[Ehrentraut, Denise]
[Schramm, Johannes]
[Felsberg, Jörg]
[Kahl, Philip]
[Büttner, Reinhard]
[Pietsch, Torsten]
[Waha, Andreas]
Attachment IconOptimization of Quantitative MGMT Promoter Methylation Analysis Using Pyrosequencing and Combined Bisulfite Restriction Analysis
In: Journal of Molecular Diagnostics [9], 368-381
Journal Article
1
Hide details for Ehret, RobertEhret, Robert
2012[Obermeier, Martin]
Pironti, Alejandro
[Berg, Thomas]
[Braun, Patrick]
[Däumer, Martin]
[Eberle, Josef]
[Ehret, Robert]
[Kaiser, Rolf]
[Kleinkauf, Niels]
[Korn, Klaus]
[Kücherer, Claudia]
[Müller, Harm]
[Noah, Christian]
[Stürmer, Martin]
Thielen, Alexander
[Wolf, Eva]
[Walter, Hauke]
HIV-GRADE: A Publicly Available, Rules-Based Drug Resistance Interpretation Algorithm Integrating Bioinformatic Knowledge
In: Intervirology [55], 102-107
Journal Article
1
Hide details for Ehrhardt, A.Ehrhardt, A.
2013Beggel, Bastian
[Münk, C.]
[Däumer, M.]
[Hauck, K.]
[Häussinger, D.]
Lengauer, Thomas
[Ehrhardt, A.]
Full genome ultra-deep pyrosequencing associates G-to-A-hypermutation of the hepatitis B virus genome with the natural progression of hepatitis B
In: Journal of Viral Hepatitis [12], 882-889
Journal Article
1
Hide details for Eickhoff, HolgerEickhoff, Holger
2005[Costello, Christine M.]
[Mah, Nancy]
[Häsler, Robert]
[Rosenstiel, Philip]
[Waetzig, Georg H.]
Hahn, Andreas
[Lu, Tim]
[Gurbuz, Yesim]
[Nikolaus, Susanna]
Albrecht, Mario
[Hampe, Jochen]
[Lucius, Ralph]
[Klöppel, Günther]
[Eickhoff, Holger]
[Lehrach, Hans]
Lengauer, Thomas
[Schreiber, Stefan]
Dissection of the inflammatory bowel disease transcriptome using genome-wide cDNA microarrays identifies novel candidate disease genes
In: PLoS Medicine [2], 771-787
Journal Article
1
Hide details for Eils, RolandEils, Roland
2011[Reiss, Simon]
[Rebhan, Ilka]
[Backes, Perdita]
[Romero-Brey, Ines]
[Erfle, Holger]
[Matula, Petr]
[Kaderali, Lars]
[Poenisch, Marion]
Blankenburg, Hagen
[Hiet, Marie-Sophie]
[Longerich, Thomas]
Diehl, Sarah
Ramírez, Fidel
[Balla, Tamas]
[Rohr, Karl]
[Kaul, Artur]
[Bühler, Sandra]
[Pepperkok, Rainer]
Lengauer, Thomas
Albrecht, Mario
[Eils, Roland]
[Schirmacher, Peter]
[Lohmann, Volker]
[Bartenschlager, Ralf]
Recruitment and activation of a lipid kinase by hepatitis C virus NS5A is essential for integrity of the membranous replication compartment
In: Cell Host & Microbe [9], 32-45
Journal Article
1
Hide details for Eisenberg, DavidEisenberg, David
2011[Aranda, Bruno]
Blankenburg, Hagen
[Kerrien, Samuel]
[Brinkman, Fiona S.]
[Ceol, Arnaud]
[Chautard, Emilie]
[Dana, Jose M.]
[De Las Rivas, Javier]
[Dumousseau, Marine]
[Galeota, Eugenia]
[Gaulton, Anna]
[Goll, Johannes]
[Hancock, Robert E. W.]
[Isserlin, Ruth]
[Jimenez, Rafael C.]
[Kerssemakers, Jules]
[Khadake, Jyoti]
[Lynn, David J.]
[Michaut, Magali]
[O'Kelly, Gavin]
[Ono, Keiichiro]
[Orchard, Sandra]
[Prieto, Carlos]
[Razick, Sabry]
[Rigina, Olga]
[Salwinski, Lukasz]
[Simonovic, Milan]
[Velankar, Sameer]
[Winter, Andrew]
[Wu, Guanming]
[Bader, Gary D.]
[Cesareni, Gianni]
[Donaldson, Ian M.]
[Eisenberg, David]
[Kleywegt, Gerard J.]
[Overington, John]
[Ricard-Blum, Sylvie]
[Tyers, Mike]
Albrecht, Mario
[Hermjakob, Henning]
PSICQUIC and PSISCORE: accessing and scoring molecular interactions
In: Nature Methods [8], 528-529
Journal Article
1
Hide details for Eisinger, KathrinEisinger, Kathrin
2014[Maurer, Felix]
Hauschild, Anne-Christin
[Eisinger, Kathrin]
Baumbach, Jan
[Mayor, Arno]
[Baumbach, Jörg Ingo]
MIMA - A software for analyte identification in MCC/IMS chromatograms by mapping accompanying GC/MS measurements
In: International Journal for Ion Mobility Spectrometry [?], ?
Journal Article
1
Hide details for Ekawardhani, SaviraEkawardhani, Savira
2009[Moser, Dirk]
[Ekawardhani, Savira]
[Kumsta, Robert]
[Palmason, Haukur]
Bock, Christoph
[Athanassiadou, Zoi]
[Lesch, Klaus-Peter]
[Meyer, Jobst]
Attachment IconFunctional Analysis of a Potassium-Chloride Co-Transporter 3 (SLC12A6) Promoter Polymorphism Leading to an Additional DNA Methylation Site
In: Neuropsychopharmacology [34], 458-467
Journal Article
1
Hide details for Eksteen, BertusEksteen, Bertus
2013[Liu, Jimmy Z.]
[Hov, Johannes Roksund]
[Folseraas, Trine]
[Ellinghaus, Eva]
[Rushbrook, Simon M.]
Doncheva, Nadezhda T.
[Andreassen, Ole A.]
[Weersma, Rinse K.]
[Weismuller, Tobias J.]
[Eksteen, Bertus]
[Invernizzi, Pietro]
[Hirschfield, Gideon M.]
[Gotthardt, Daniel Nils]
[Pares, Albert]
[Ellinghaus, David]
[Shah, Tejas]
[Juran, Brian D.]
[Milkiewicz, Piotr]
[Rust, Christian]
[Schramm, Christoph]
[Muller, Tobias]
[Srivastava, Brijesh]
[Dalekos, Georgios]
[Nothen, Markus M.]
[Herms, Stefan]
[Winkelmann, Juliane]
[Mitrovic, Mitja]
[Braun, Felix]
[Ponsioen, Cyriel Y.]
[Croucher, Peter J. P.]
[Sterneck, Martina]
[Teufel, Andreas]
[Mason, Andrew L.]
[Saarela, Janna]
[Leppa, Virpi]
[Dorfman, Ruslan]
[Alvaro, Domenico]
[Floreani, Annarosa]
[Onengut-Gumuscu, Suna]
[Rich, Stephen S.]
[Thompson, Wesley K.]
[Schork, Andrew J.]
[Naess, Sigrid]
[Thomsen, Ingo]
Mayr, Gabriele
[Konig, Inke R.]
[Hveem, Kristian]
[Cleynen, Isabelle]
[Gutierrez-Achury, Javier]
[Ricano-Ponce, Isis]
[van Heel, David]
[Bjornsson, Einar]
[Sandford, Richard N.]
[Durie, Peter R.]
[Melum, Espen]
[Vatn, Morten H.]
[Silverberg, Mark S.]
[Duerr, Richard H.]
[Padyukov, Leonid]
[Brand, Stephan]
[Sans, Miquel]
[Annese, Vito]
[Achkar, Jean-Paul]
[Boberg, Kirsten Muri]
[Marschall, Hanns-Ulrich]
[Chazouilleres, Olivier]
[Bowlus, Christopher L.]
[Wijmenga, Cisca]
[Schrumpf, Erik]
[Vermeire, Severine]
Albrecht, Mario
[The UK-PSCSC Consortium,]
[The International IBD Genetics Consortium,]
[Rioux, John D.]
[Alexander, Graeme]
[Bergquist, Annika]
[Cho, Judy]
[Schreiber, Stefan]
[Manns, Michael P.]
[Farkkila, Martti]
[Dale, Anders M.]
[Chapman, Roger W.]
[Lazaridis, Konstantinos N.]
[The International PSC Study Group,]
[Franke, Andre]
[Anderson, Carl A.]
[Karlsen, Tom H.]
Dense genotyping of immune-related disease regions identifies nine new risk loci for primary sclerosing cholangitis
In: Nature Genetics [45], 670-677
Journal Article
1
Hide details for El-Maarri, OsmanEl-Maarri, Osman
2007[Mikeska, Thomas]
Bock, Christoph
[El-Maarri, Osman]
[Hübner, Anika]
[Ehrentraut, Denise]
[Schramm, Johannes]
[Felsberg, Jörg]
[Kahl, Philip]
[Büttner, Reinhard]
[Pietsch, Torsten]
[Waha, Andreas]
Attachment IconOptimization of Quantitative MGMT Promoter Methylation Analysis Using Pyrosequencing and Combined Bisulfite Restriction Analysis
In: Journal of Molecular Diagnostics [9], 368-381
Journal Article
1
Hide details for Eldarov, NasimiEldarov, Nasimi
2012Eldarov, NasimiModeling influenza evolution in response to immune system pressure
Universität des Saarlandes
Thesis - Masters thesis
1
Hide details for Elder, James T.Elder, James T.
2010[Ellinghaus, Eva]
[Ellinghaus, David]
[Stuart, Philip E.]
[Nair, Rajan P.]
[Debrus, Sophie]
[Raelson, John V.]
[Belouchi, Majid]
[Fournier, Hélène]
[Reinhard, Claudia]
[Ding, Jun]
[Li, Yun]
[Tejasvi, Trilokraj]
[Gudjonsson, Johann]
[Stoll, Stefan W.]
[Voorhees, John J.]
[Lambert, Sylviane]
[Weidinger, Stephan]
[Eberlein, Bernadette]
[Kunz, Manfred]
[Rahman, Proton]
[Gladman, Dafna D.]
[Gieger, Christian]
[Wichmann, H. Erich]
[Karlsen, Tom H.]
Mayr, Gabriele
Albrecht, Mario
[Kabelitz, Dieter]
[Mrowietz, Ulrich]
[Abecasis, Gonçalo R.]
[Elder, James T.]
[Schreiber, Stefan]
[Weichenthal, Michael]
[Franke, Andre]
Genome-wide association study identifies a psoriasis susceptibility locus at TRAF3IP2
In: Nature Genetics [42], 991-995
Journal Article
5
Hide details for Ellinghaus, DavidEllinghaus, David
2013[Ellinghaus, David]
[Zhang, Hu]
[Zeissig, Sebastian]
[Lipinski, Simone]
[Till, Andreas]
[Jiang, Tao]
[Stade, Björn]
[Bromberg, Yana]
[Ellinghaus, Eva]
[Keller, Andreas]
[Rivas, Manuel A.]
[Skieceviciene, Jurgita]
Doncheva, Nadezhda T.
[Liu, Xiao]
[Liu, Qing]
[Jiang, Fuman]
[Forster, Michael]
Mayr, Gabriele
Albrecht, Mario
[Häsler, Robert]
[Boehm, Bernhard O.]
[Goodall, Jane]
[Berzuini, Carlo R.]
[Lee, James]
[Andersen, Vibeke]
[Vogel, Ulla]
[Kupcinskas, Limas]
[Kayser, Manfred]
[Krawczak, Michael]
[Nikolaus, Susanna]
[Weersma, Rinse K.]
[Ponsioen, Cyriel Y.]
[Sans, Miquel]
[Wijmenga, Cisca]
[Strachan, David P.]
[McArdle, Wendy L.]
[Vermeire, Séverine]
[Rutgeerts, Paul]
[Sanderson, Jeremy D.]
[Mathew, Christopher G.]
[Vatn, Morten H.]
[Wang, Jun]
[Nöthen, Markus M.]
[Duerr, Richard H.]
[Büning, Carsten]
[Brand, Stephan]
[Glas, Jürgen]
[Winkelmann, Juliane]
[Illig, Thomas]
[Latiano, Anna]
[Annese, Vito]
[Halfvarson, Jonas]
[D'Amato, Mauro]
[Daly, Mark J.]
[Nothnagel, Michael]
[Karlsen, Tom H.]
[Subramani, Suresh]
[Rosenstiel, Philip]
[Schreiber, Stefan]
[Parkes, Miles]
[Franke, Andre]
Association between variants of PRDM1 and NDP52 and Crohn's disease, based on exome sequencing and functional studies
In: Gastroenterology [145], 339-347
Journal Article
2013[Liu, Jimmy Z.]
[Hov, Johannes Roksund]
[Folseraas, Trine]
[Ellinghaus, Eva]
[Rushbrook, Simon M.]
Doncheva, Nadezhda T.
[Andreassen, Ole A.]
[Weersma, Rinse K.]
[Weismuller, Tobias J.]
[Eksteen, Bertus]
[Invernizzi, Pietro]
[Hirschfield, Gideon M.]
[Gotthardt, Daniel Nils]
[Pares, Albert]
[Ellinghaus, David]
[Shah, Tejas]
[Juran, Brian D.]
[Milkiewicz, Piotr]
[Rust, Christian]
[Schramm, Christoph]
[Muller, Tobias]
[Srivastava, Brijesh]
[Dalekos, Georgios]
[Nothen, Markus M.]
[Herms, Stefan]
[Winkelmann, Juliane]
[Mitrovic, Mitja]
[Braun, Felix]
[Ponsioen, Cyriel Y.]
[Croucher, Peter J. P.]
[Sterneck, Martina]
[Teufel, Andreas]
[Mason, Andrew L.]
[Saarela, Janna]
[Leppa, Virpi]
[Dorfman, Ruslan]
[Alvaro, Domenico]
[Floreani, Annarosa]
[Onengut-Gumuscu, Suna]
[Rich, Stephen S.]
[Thompson, Wesley K.]
[Schork, Andrew J.]
[Naess, Sigrid]
[Thomsen, Ingo]
Mayr, Gabriele
[Konig, Inke R.]
[Hveem, Kristian]
[Cleynen, Isabelle]
[Gutierrez-Achury, Javier]
[Ricano-Ponce, Isis]
[van Heel, David]
[Bjornsson, Einar]
[Sandford, Richard N.]
[Durie, Peter R.]
[Melum, Espen]
[Vatn, Morten H.]
[Silverberg, Mark S.]
[Duerr, Richard H.]
[Padyukov, Leonid]
[Brand, Stephan]
[Sans, Miquel]
[Annese, Vito]
[Achkar, Jean-Paul]
[Boberg, Kirsten Muri]
[Marschall, Hanns-Ulrich]
[Chazouilleres, Olivier]
[Bowlus, Christopher L.]
[Wijmenga, Cisca]
[Schrumpf, Erik]
[Vermeire, Severine]
Albrecht, Mario
[The UK-PSCSC Consortium,]
[The International IBD Genetics Consortium,]
[Rioux, John D.]
[Alexander, Graeme]
[Bergquist, Annika]
[Cho, Judy]
[Schreiber, Stefan]
[Manns, Michael P.]
[Farkkila, Martti]
[Dale, Anders M.]
[Chapman, Roger W.]
[Lazaridis, Konstantinos N.]
[The International PSC Study Group,]
[Franke, Andre]
[Anderson, Carl A.]
[Karlsen, Tom H.]
Dense genotyping of immune-related disease regions identifies nine new risk loci for primary sclerosing cholangitis
In: Nature Genetics [45], 670-677
Journal Article
2010[Franke, Andre]
[Balschun, Tobias]
[Sina, Christian]
[Ellinghaus, David]
[Häsler, Robert]
Mayr, Gabriele
Albrecht, Mario
[Wittig, Michael]
[Buchert, Eva]
[Nikolaus, Susanna]
[Gieger, Christian]
[Wichmann, H. Erich]
[Sventoraityte, Jurgita]
[Kupcinskas, Limas]
[Onnie, Clive M.]
[Gazouli, Maria]
[Anagnou, Nicholas P.]
[Strachan, David]
[McArdle, Wendy L.]
[Mathew, Christopher G.]
[Rutgeerts, Paul]
[Vermeire, Séverine]
[Vatn, Morten H.]
[Krawczak, Michael]
[Rosenstiel, Philip]
[Karlsen, Tom H.]
[Schreiber, Stefan]
Genome-wide association study for ulcerative colitis identifies risk loci at 7q22 and 22q13 (IL17REL)
In: Nature Genetics [42], 292-294
Journal Article
2010[Ellinghaus, Eva]
[Ellinghaus, David]
[Stuart, Philip E.]
[Nair, Rajan P.]
[Debrus, Sophie]
[Raelson, John V.]
[Belouchi, Majid]
[Fournier, Hélène]
[Reinhard, Claudia]
[Ding, Jun]
[Li, Yun]
[Tejasvi, Trilokraj]
[Gudjonsson, Johann]
[Stoll, Stefan W.]
[Voorhees, John J.]
[Lambert, Sylviane]
[Weidinger, Stephan]
[Eberlein, Bernadette]
[Kunz, Manfred]
[Rahman, Proton]
[Gladman, Dafna D.]
[Gieger, Christian]
[Wichmann, H. Erich]
[Karlsen, Tom H.]
Mayr, Gabriele
Albrecht, Mario
[Kabelitz, Dieter]
[Mrowietz, Ulrich]
[Abecasis, Gonçalo R.]
[Elder, James T.]
[Schreiber, Stefan]
[Weichenthal, Michael]
[Franke, Andre]
Genome-wide association study identifies a psoriasis susceptibility locus at TRAF3IP2
In: Nature Genetics [42], 991-995
Journal Article
2008[Franke, Andre]
[Balschun, Tobias]
[Karlsen, Tom H.]
[Sventoraityte, Jurgita]
[Nikolaus, Susanna]
Mayr, Gabriele
Domingues, Francisco S.
Albrecht, Mario
[Nothnagel, Michael]
[Ellinghaus, David]
[Sina, Christian]
[Onnie, Clive M.]
[Weersma, Rinse K.]
[Stokkers, Pieter C. F.]
[Wijmenga, Cisca]
[Gazouli, Maria]
[Strachan, David]
[McArdle, Wendy L.]
[Vermeire, Séverine]
[Rutgeers, Paul]
[Rosenstiel, Philip]
[Krawczak, Michael]
[Vatn, Morten H.]
[IBSEN study group, the]
[Mathew, Christopher G.]
[Schreiber, Stefan]
Sequence variants in IL10, ARPC2, and multiple other loci contribute to ulcerative colitis
In: Nature Genetics [40], 1319-1323
Journal Article
3
Hide details for Ellinghaus, EvaEllinghaus, Eva
2013[Ellinghaus, David]
[Zhang, Hu]
[Zeissig, Sebastian]
[Lipinski, Simone]
[Till, Andreas]
[Jiang, Tao]
[Stade, Björn]
[Bromberg, Yana]
[Ellinghaus, Eva]
[Keller, Andreas]
[Rivas, Manuel A.]
[Skieceviciene, Jurgita]
Doncheva, Nadezhda T.
[Liu, Xiao]
[Liu, Qing]
[Jiang, Fuman]
[Forster, Michael]
Mayr, Gabriele
Albrecht, Mario
[Häsler, Robert]
[Boehm, Bernhard O.]
[Goodall, Jane]
[Berzuini, Carlo R.]
[Lee, James]
[Andersen, Vibeke]
[Vogel, Ulla]
[Kupcinskas, Limas]
[Kayser, Manfred]
[Krawczak, Michael]
[Nikolaus, Susanna]
[Weersma, Rinse K.]
[Ponsioen, Cyriel Y.]
[Sans, Miquel]
[Wijmenga, Cisca]
[Strachan, David P.]
[McArdle, Wendy L.]
[Vermeire, Séverine]
[Rutgeerts, Paul]
[Sanderson, Jeremy D.]
[Mathew, Christopher G.]
[Vatn, Morten H.]
[Wang, Jun]
[Nöthen, Markus M.]
[Duerr, Richard H.]
[Büning, Carsten]
[Brand, Stephan]
[Glas, Jürgen]
[Winkelmann, Juliane]
[Illig, Thomas]
[Latiano, Anna]
[Annese, Vito]
[Halfvarson, Jonas]
[D'Amato, Mauro]
[Daly, Mark J.]
[Nothnagel, Michael]
[Karlsen, Tom H.]
[Subramani, Suresh]
[Rosenstiel, Philip]
[Schreiber, Stefan]
[Parkes, Miles]
[Franke, Andre]
Association between variants of PRDM1 and NDP52 and Crohn's disease, based on exome sequencing and functional studies
In: Gastroenterology [145], 339-347
Journal Article
2013[Liu, Jimmy Z.]
[Hov, Johannes Roksund]
[Folseraas, Trine]
[Ellinghaus, Eva]
[Rushbrook, Simon M.]
Doncheva, Nadezhda T.
[Andreassen, Ole A.]
[Weersma, Rinse K.]
[Weismuller, Tobias J.]
[Eksteen, Bertus]
[Invernizzi, Pietro]
[Hirschfield, Gideon M.]
[Gotthardt, Daniel Nils]
[Pares, Albert]
[Ellinghaus, David]
[Shah, Tejas]
[Juran, Brian D.]
[Milkiewicz, Piotr]
[Rust, Christian]
[Schramm, Christoph]
[Muller, Tobias]
[Srivastava, Brijesh]
[Dalekos, Georgios]
[Nothen, Markus M.]
[Herms, Stefan]
[Winkelmann, Juliane]
[Mitrovic, Mitja]
[Braun, Felix]
[Ponsioen, Cyriel Y.]
[Croucher, Peter J. P.]
[Sterneck, Martina]
[Teufel, Andreas]
[Mason, Andrew L.]
[Saarela, Janna]
[Leppa, Virpi]
[Dorfman, Ruslan]
[Alvaro, Domenico]
[Floreani, Annarosa]
[Onengut-Gumuscu, Suna]
[Rich, Stephen S.]
[Thompson, Wesley K.]
[Schork, Andrew J.]
[Naess, Sigrid]
[Thomsen, Ingo]
Mayr, Gabriele
[Konig, Inke R.]
[Hveem, Kristian]
[Cleynen, Isabelle]
[Gutierrez-Achury, Javier]
[Ricano-Ponce, Isis]
[van Heel, David]
[Bjornsson, Einar]
[Sandford, Richard N.]
[Durie, Peter R.]
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Albrecht, Mario
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[Cho, Judy]
[Schreiber, Stefan]
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Dense genotyping of immune-related disease regions identifies nine new risk loci for primary sclerosing cholangitis
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2010[Ellinghaus, Eva]
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Mayr, Gabriele
Albrecht, Mario
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[Weichenthal, Michael]
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Genome-wide association study identifies a psoriasis susceptibility locus at TRAF3IP2
In: Nature Genetics [42], 991-995
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1
Hide details for ElSharawy, AbdouElSharawy, Abdou
2007[Franke, Andre]
[Hampe, Jochen]
[Rosenstiel, Philip]
[Becker, Christoph]
[Wagner, Florian]
[Häsler, Robert]
[Little, Randall D.]
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[ElSharawy, Abdou]
Mayr, Gabriele
Albrecht, Mario
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[Nürnberg, Peter]
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Systematic association mapping identifies NELL1 as a novel IBD disease gene
In: PLoS ONE [2], e691.1-13
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Hide details for Emig, DorotheaEmig, Dorothea
2012Emig, Dorothea
Blankenburg, Hagen
Ramírez, Fidel
Albrecht, Mario
Functional characterization of human genes from exon expression and RNA interference results
In: Bioinformatics and Drug Discovery, 33-53
Part of a Book
2012[Garai, Ágnes]
[Zeke, András]
[Gógl, Gergo]
[Töro, Imre]
[Fördos, Ferenc]
Blankenburg, Hagen
[Bárkai, Tünde]
[Varga, János]
[Alexa, Anita]
Emig, Dorothea
Albrecht, Mario
[Reményi, Attila]
Specificity of linear motifs that bind to a common mitogen-activated protein kinase docking groove
In: Science Signaling [5], ra74,1-ra74,14
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2011[Wittkop, Tobias]
Emig, Dorothea
[Truss, Anke]
Albrecht, Mario
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Baumbach, Jan
Comprehensive cluster analysis with Transitivity Clustering
In: Nature Protocols [6], 285-295
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2011Emig, Dorothea
Kacprowski, Tim
Albrecht, Mario
Measuring and analyzing tissue specificity of human genes and protein complexes
In: EURASIP Journal on Bioinformatics and Systems Biology [2011], 5,1-5,6
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2011Emig, DorotheaNovel analysis approaches to context-dependent molecular networks
Universität des Saarlandes
Thesis - PhD thesis
2011Emig, Dorothea
Sander, Oliver
Mayr, Gabriele
Albrecht, Mario
Structure collisions between interacting proteins
In: PLoS ONE [6], e19581,1-e19581,7
Electronic Journal Article
2011Emig, Dorothea
Albrecht, Mario
Tissue-specific proteins and functional implications
In: Journal of Proteome Research [10], 1893-1903
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2010Emig, Dorothea
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Lengauer, Thomas
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Albrecht, Mario
AltAnalyze and DomainGraph: analyzing and visualizing exon expression data
In: Nucleic Acids Research [38], W755-W762
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2010Emig, Dorothea
Kacprowski, Tim
Albrecht, Mario
Measuring and analyzing tissue specificity of human genes and protein complexes
In: Seventh International Workshop on Computational Systems
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2010[Wittkop, Tobias]
Emig, Dorothea
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Albrecht, Mario
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Baumbach, Jan
Partitioning biological data with transitivity clustering
In: Nature Methods [7], 419-420
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2009Blankenburg, Hagen
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Ramírez, Fidel
Emig, Dorothea
Schelhorn, Sven-Eric
Büch, Joachim
Lengauer, Thomas
Albrecht, Mario
DASMI: exchanging, annotating and assessing molecular interaction data
In: Bioinformatics [25], 1321-1328
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2008Emig, Dorothea
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Lengauer, Thomas
Albrecht, Mario
Integrating expression data with domain interaction networks
In: Bioinformatics [24], 2546-2548
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2008Emig, Dorothea
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Lengauer, Thomas
Albrecht, Mario
Integrative visual analysis of the effects of alternative splicing on protein domain interaction networks
In: Journal of Integrative Bioinformatics [5], 101-115
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2008Emig, Dorothea
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Albrecht, Mario
Visualizing domain interaction networks and the impact of alternative splicing events
In: Proceedings of the 5th International Conference on BioMedical Visualization (MediVis): Information Visualization in Medical and Biomedical Informatics, 36-43
Proceedings Article
2007Emig, DorotheaThe Impact of Alternative Splicing on Protein Interaction Networks
Eberhard Karls Universität Tübingen
Thesis - other
1
Hide details for Engers, RainerEngers, Rainer
2007[Schulz, Wolfgang A.]
Alexa, Adrian
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Lengauer, Thomas
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Rahnenführer, Jörg
Attachment IconFactor interaction analysis for chromosome 8 and DNA methylation alterations highlights innate immune response suppression and cytoskeletal changes in prostate cancer
In: Molecular Cancer [6], 1-16
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Hide details for Engert, J.C.Engert, J.C.
2002[Zwarts, K.Y.]
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Roomp, Kirsten
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ABCA1 regulatory variants influence coronary artery disease independent of effects on plasma lipid levels
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Common genetic variation in ABCA1 is associated with altered lipoprotein levels and a modified risk for coronary artery disease
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Hide details for Engström, PGEngström, PG
2013[Steijger, T]
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Assessment of transcript reconstruction methods for RNA-seq
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2013[Steijger, T]
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Assessment of transcript reconstruction methods for RNA-seq
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2012[Adams, David]
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BLUEPRINT to decode the epigenetic signature written in blood
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2011Nebot, Victoria
Ye, Min
Albrecht, Mario
Eom, Jae-Hong
Weikum, Gerhard
DIDO: a disease-determinants ontology from web sources
In: Proceedings of the 20th International Conference on World Wide Web (WWW 2011), 237-240
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2010Albrecht, Mario
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On open problems in biological network visualization
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2011[Ziller, Michael J.]
Müller, Fabian
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Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications
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A large-scale evaluation of computational protein function prediction
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Recruitment and activation of a lipid kinase by hepatitis C virus NS5A is essential for integrity of the membranous replication compartment
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Buning, Christian
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The Helmholtz Network for Bioinformatics: an integrative web portal for bioinformatics resources
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Attachment IconVariants in a novel epidermal collagen gene (COL29A1) are associated with atopic dermatitis
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2012[Sierra, Saleta]
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Pironti, Alejandro
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Thielen, Alexander
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Optimisation of baseline genotypic testing for safe and efficient maraviroc administration
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HIV prevalence and route of transmission in Turkish immigrants
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Prediction of HIV-1 coreceptor usage (tropism) by sequence analysis using a genotypic approach
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Evolution of raltegravir resistance during therapy
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Assenov, Yassen
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BLUEPRINT to decode the epigenetic signature written in blood
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Comparative genome-wide DNA methylation analysis of colorectal tumor and matched normal tissues
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Hide details for Esteller,ManelEsteller,Manel
2013[Sandoval, Juan]
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[Nadal, Ernest]
[Chen, Guoan]
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Assenov, Yassen
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A Prognostic DNA Methylation Signature for Stage I Non-Small-Cell Lung Cancer
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Hide details for Estivill, XavierEstivill, Xavier
2012[Adams, David]
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Bock, Christoph
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Lengauer, Thomas
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BLUEPRINT to decode the epigenetic signature written in blood
In: Nature Biotechnology [30], 224-226
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Hide details for Evers, A.Evers, A.
2005[Hessler, G.]
[Zimmermann, M.]
[Matter, H.]
[Evers, A.]
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Lengauer, Thomas
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Multiple-Ligand-Based Virtual Screening: Methods and Applications of the MTree Approach
In: Journal of Medicinal Chemistry [48], 6575-6584
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Hide details for Evert, Bernd O.Evert, Bernd O.
2006[Boeddrich, Annett]
[Gaumer, Sébastien]
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Albrecht, Mario
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An arginine/lysine-rich motif is crucial for VCP/p97-mediated modulation of ataxin-3 fibrillogenesis
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Lengauer, Thomas
Structural modeling of ataxin-3 reveals distant homology to adaptins
In: Proteins: Structure, Function, and Genetics [50], 355-370
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Hide details for Eyrisch, SusanneEyrisch, Susanne
2004Eyrisch, SusanneAttachment IconFun2Struc-A Tool For Predicting Protein Structure
Classes from Function Predictions
Universität des Saarlandes
Thesis - Bachelor thesis
15
Hide details for Faetkenheuer, GerdFaetkenheuer, Gerd
2012[Sierra, Saleta]
[Dzbowski, Jan Nikolaj]
Pironti, Alejandro
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Thielen, Alexander
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Lengauer, Thomas
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Optimisation of baseline genotypic testing for safe and efficient maraviroc administration
In: Journal of the International AIDS Society, 101-102
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2012[Reuter, Stefan]
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Lengauer, Thomas
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Risk factors associated with older age in treatment-naive HIV-positive patients
In: Intervirology [55], 147-153
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In: Medical Microbiology and Immunology [200], 51-51
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HIV prevalence and route of transmission in Turkish immigrants
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In: Medical Microbiology and Immunology [200], 219-223
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Prediction of HIV-1 coreceptor usage (tropism) by sequence analysis using a genotypic approach
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Prevalence and characteristics of hepatitis B and C virus infections in treatment-naïve HIV-infected patients
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Relevance of HIV gag cleavage site mutations in failures of protease inhibitor therapies
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Compensatory mutations at the HIV cleavage sites p7/p1 and p1/p6-gag in therapy-naive and therapy-experienced patients
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Stable coreceptor usage of HIV in patients with ongoing treatment failure on HAART
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Characterization of novel HIV Drug Resistance Mutations using clustering, multidimensional scaling and SVM-based feature ranking
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Sing, Tobias
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Computational methods for the design of effective therapies against drug resistant HIV strains
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Stable coreceptor usage of HIV-1 in patients with ongoing treatment failure on HAART
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Geno2pheno is predictive of short-term virological response
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Hide details for Falcão, André OFalcão, André O
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Albrecht, Mario
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Mining GO annotations for improving annotation consistency
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Evidence for Reductive Genome Evolution and Lateral Acquisition of Virulence Functions in two Corynebacterium pseudotuberculosis strains
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Hide details for Falch, Peter A. (ed.)Falch, Peter A. (ed.)
2004Sing, Tobias
Beerenwinkel, Niko
Lengauer, Thomas
Learning mixtures of localized rules by maximizing the area under the ROC curve
In: ROCAI-2004: 1st International Workshop on ROC Analysis in Artificial Intelligence, 89-96
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Hide details for Falda, MarcoFalda, Marco
2013[Radivojac, Predrag]
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Gatzmann, Fanny
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A large-scale evaluation of computational protein function prediction
In: Nature Methods [10], 221-227
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Hide details for Fang, HaiFang, Hai
2013[Radivojac, Predrag]
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[Schnoes, Alexandra M]
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[Casadio, Rita]
[Wang, Zheng]
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[Ka\ss ner, Rebecca]
[Seemayer, Stefan]
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Gatzmann, Fanny
Sommer, Ingolf
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[{Di Camillo}, Barbara]
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[Guo, Yuhong]
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A large-scale evaluation of computational protein function prediction
In: Nature Methods [10], 221-227
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Hide details for Fang, JianwenFang, Jianwen
2007[Salamat-Miller, Nazila]
[Fang, Jianwen]
[Seidel, Christopher W.]
Assenov, Yassen
Albrecht, Mario
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Attachment IconA network-based analysis of polyanion-binding proteins utilizing human protein arrays
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A network-based analysis of polyanion-binding proteins utilizing yeast protein arrays
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2012[Faria, Daniel]
Schlicker, Andreas
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Albrecht, Mario
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Mining GO annotations for improving annotation consistency
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Hide details for Fariselli, PieroFariselli, Piero
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Attachment IconThe implications of alternative splicing in the ENCODE protein complement
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Dense genotyping of immune-related disease regions identifies nine new risk loci for primary sclerosing cholangitis
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Attachment IconPatients with high grade gliomas harboring delections of chromosomes 9p and 10q benefit from temozolomide treatment
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Genomic organization of the human tissue inhibitor of metalloproteinases-3 (TIMP3)
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Somatic hypermutation and mRNA expression levels of the BCL-6 gene in patients with hepatitis C virus-associated lymphoproliferative diseases
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Bock, Christoph
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A promoter DNA demethylation landscape of human hematopoietic differentiation
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Welsch, Christoph
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Somatic hypermutation and mRNA expression levels of the BCL-6 gene in patients with hepatitis C virus-associated lymphoproliferative diseases
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Schlicker, Andreas
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A promoter DNA demethylation landscape of human hematopoietic differentiation
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A DNA methylation fingerprint of 1628 human samples
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2004Sing, Tobias
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Learning mixtures of localized rules by maximizing the area under the ROC curve
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Evidence for Reductive Genome Evolution and Lateral Acquisition of Virulence Functions in two Corynebacterium pseudotuberculosis strains
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Evidence for Reductive Genome Evolution and Lateral Acquisition of Virulence Functions in two Corynebacterium pseudotuberculosis strains
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Sing, Tobias
Savenkov, Igor
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Improved prediction of response to antiretroviral combination therapy using the genetic barrier to drug resistance
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Lengauer, Thomas
Inferring virological response from genotype: with or without predicted phenotypes?
In: Proceedings of the 16th International HIV Drug Resistance Workshop, S169
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2009Altmann, André
Sing, Tobias
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Advantages of Predicted Phenotypes and Statistical Learning Models in Inferring Virological Response to Antiretroviral Therapy from HIV Genotype
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Predicting the Response to Combination Antiretroviral Therapy: Retrospective Validation of
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2012[Feuerbach, Lars]
Halachev, Konstantin
Assenov, Yassen
Mueller, Fabian
Bock, Christoph
Lengauer, Thomas
Analyzing epigenome data in context of genome evolution and human diseases
In: Evolutionary Genomics : Statistical and Computational Methods, Volume 2, 431-467
In: Methods of Molecular Biology [856], 431-467
Part of a Book
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Feuerbach, Lars
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MicroRNA Transcription Start Site Prediction with Multi-objective Feature Selection
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Ancestral germline methylation reconstruction of young repeats
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Comparative Epigenomiocs - Towards Ancestral Germline Methylome Reconstruction
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Halachev, Konstantin
Lengauer, Thomas
Bock, Christoph
An exhaustive methode for CpG island annotation
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Christopher, Bock
Halachev, Konstantin
Büch, Joachim
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Towards Comparative Epigenomics: A Software Toolkit For Cross-Species Epigenome Data Analysis
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2007Feuerbach, LarsAttachment IconTowards Comparative Epigenomics: A Pilot Study on DNA Methylation of CpG Islands on Human Chromosome 21
Universität des Saarlandes
Thesis - Masters thesis
1
Hide details for Feuerbach, L.Feuerbach, L.
2013[Bhadra, T.]
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Lengauer, Thomas
Bandyopadhyay, S.
DNA Methylation Patterns Facilitate the Identification of Transcription Start Sites: A Brain-specofoc Study
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1999[Brooks-Wilson, A]
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Roomp, Kirsten
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Mutations in ABC1 in Tangier disease and familial high-density lipoprotein
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1999[Marcil, Michel]
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Roomp, Kirsten
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Mutations in the ABC1 gene in familial HDL deficiency with defective cholesterol efflux
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Hide details for Fielder, MFielder, M
2007[Zazzi, Maurizio]
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EuResist: exploration of multiple modeling techniques for prediction of response to treatment
In: Proceedings of the 5th European HIV Drug Resistance Workshop, -
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A Prognostic DNA Methylation Signature for Stage I Non-Small-Cell Lung Cancer
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Hauschild, Anne-Christin
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Baumbach, Jan
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2011[Zacharek, Sima J.]
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Lung stem cell self-renewal relies on BMI1-dependent control of expression at imprinted loci
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2009Blankenburg, Hagen
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Ramírez, Fidel
Emig, Dorothea
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Integrating biological data - the Distributed Annotation System
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Predicting drug susceptibility of non-small cell lung cancers based on genetic lesions
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Sensitive detection of viral transcripts in human tumor transcriptomes
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2005[Beerenwinkel, Niko]
Sing, Tobias
Lengauer, Thomas
Rahnenführer, Jörg
Roomp, Kirsten
Savenkov, Igor
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Computational methods for the design of effective therapies against drug resistant HIV strains
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2008Fischer, SandraStructure-based prediction of HIV-1 drug resistance
Universität des Saarlandes
Thesis - Masters thesis
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Hanna, megan
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Predicting drug susceptibility of non-small cell lung cancers based on genetic lesions
In: Journal of Clinical Investigation [119], 1727-1740
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2013[Dietz, J.]
Schelhorn, Sven-Eric
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Deep sequencing reveals mutagenic effects of ribavirin during monotherapy of HCV genotype 1-infected patients
In: Journal of Virology [87], 6172-6181
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Hide details for Fitzgibbon, JudeFitzgibbon, Jude
2012[Adams, David]
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BLUEPRINT to decode the epigenetic signature written in blood
In: Nature Biotechnology [30], 224-226
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Hide details for Flandre, PhilippeFlandre, Philippe
2011[Alcaro, Stefano]
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Docking Analysis and Resistance Evaluation of Clinically Relevant Mutations Associated with the HIV-1 Nonnucleoside Reverse Transcriptase Inhibitors Nevirapine, Efavirenz and Etravirine
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Hide details for Fleurye, HervèFleurye, Hervè
2011[Svichera, Valentina]
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Beggel, Bastian
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Role of hepatitis B virus genetic barrier in drug-resistance and immune-escape development
In: Digestive and Liver Disease [43], 975–983
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Hide details for Fleury, HervèFleury, Hervè
2011[Svicher, Valentina]
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Role of hepatitis B virus genetic barrier in drug-resistance and immune-escape development
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Hide details for Flicek, PaulFlicek, Paul
2012[Adams, David]
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[Ballesteros, Juan]
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Bock, Christoph
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Lengauer, Thomas
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BLUEPRINT to decode the epigenetic signature written in blood
In: Nature Biotechnology [30], 224-226
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Hide details for Flockerzi, AlineFlockerzi, Aline
2007[Flockerzi, Aline]
Maydt, Jochen
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Attachment IconExpression pattern analysis of transcribed HERV sequences is complicated by ex vitvo recombination
In: Retrovirology [4], 39
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2013[Liu, Jimmy Z.]
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Albrecht, Mario
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Dense genotyping of immune-related disease regions identifies nine new risk loci for primary sclerosing cholangitis
In: Nature Genetics [45], 670-677
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Hide details for Florl, Andrea R.Florl, Andrea R.
2007[Schulz, Wolfgang A.]
Alexa, Adrian
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Rahnenführer, Jörg
Attachment IconFactor interaction analysis for chromosome 8 and DNA methylation alterations highlights innate immune response suppression and cytoskeletal changes in prostate cancer
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Hide details for Fluck, JulianeFluck, Juliane
2003[Zien, Alexander]
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Lengauer, Thomas
Microarrays: How many do you need?
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Microarrays: How Many Do You Need?
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Hide details for Fölsch, Ulrich R.Fölsch, Ulrich R.
2007[Hampe, Jochen]
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A genome-wide association scan of nonsynonymous SNPs identifies a susceptibility variant for Crohn disease in ATG16L1
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Genetic variation in DLG5 is associated with inflammatory bowel disease
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2012[Garai, Ágnes]
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Specificity of linear motifs that bind to a common mitogen-activated protein kinase docking groove
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[Teufel, Andreas]
[Mason, Andrew L.]
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[Leppa, Virpi]
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[Thompson, Wesley K.]
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Mayr, Gabriele
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[Cleynen, Isabelle]
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[Ricano-Ponce, Isis]
[van Heel, David]
[Bjornsson, Einar]
[Sandford, Richard N.]
[Durie, Peter R.]
[Melum, Espen]
[Vatn, Morten H.]
[Silverberg, Mark S.]
[Duerr, Richard H.]
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[Brand, Stephan]
[Sans, Miquel]
[Annese, Vito]
[Achkar, Jean-Paul]
[Boberg, Kirsten Muri]
[Marschall, Hanns-Ulrich]
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Albrecht, Mario
[The UK-PSCSC Consortium,]
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[Alexander, Graeme]
[Bergquist, Annika]
[Cho, Judy]
[Schreiber, Stefan]
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[Dale, Anders M.]
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[Anderson, Carl A.]
[Karlsen, Tom H.]
Dense genotyping of immune-related disease regions identifies nine new risk loci for primary sclerosing cholangitis
In: Nature Genetics [45], 670-677
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1
Hide details for Fontana, PaoloFontana, Paolo
2013[Radivojac, Predrag]
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[Oron, Tal Ronnen]
[Schnoes, Alexandra M]
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[Wang, Zheng]
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Gatzmann, Fanny
Sommer, Ingolf
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A large-scale evaluation of computational protein function prediction
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Hide details for Forbici, FedericaForbici, Federica
2011[Alcaro, Stefano]
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Sing, Tobias
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Docking Analysis and Resistance Evaluation of Clinically Relevant Mutations Associated with the HIV-1 Nonnucleoside Reverse Transcriptase Inhibitors Nevirapine, Efavirenz and Etravirine
In: ChemMedChem [6], 2203-2213
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Sing, Tobias
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Lengauer, Thomas
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Dynamics of NRTI resistance mutations during therapy interruption
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Sing, Tobias
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Lengauer, Thomas
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Attachment IconCharacterization and structural analysis of novel mutations in human immunodeficiency virus type 1 reverse transcriptase involved in the regulation of restistance to nonnucleoside inhibitors
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Involvement of novel HIV-1 reverse transcriptase mutations in the regulation of resistance to nucleoside inhibitors
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Hide details for Forestier, NicoleForestier, Nicole
2010[Welker, Martin-Walter]
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Antes, Iris
Albrecht, Mario
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Lengauer, Thomas
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Dimerization of the hepatitis C virus nonstructural protein 4B depends on the integrity of an aminoterminal basic leucine zipper
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Hide details for Forsberg, Kevin J.Forsberg, Kevin J.
2010[Harris, R. Alan]
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Bock, Christoph
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Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications
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Hide details for Forster, MichaelForster, Michael
2013[Ellinghaus, David]
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Doncheva, Nadezhda T.
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Association between variants of PRDM1 and NDP52 and Crohn's disease, based on exome sequencing and functional studies
In: Gastroenterology [145], 339-347
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Hide details for Fournier, HélèneFournier, Hélène
2010[Ellinghaus, Eva]
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Genome-wide association study identifies a psoriasis susceptibility locus at TRAF3IP2
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Systematic association mapping identifies NELL1 as a novel IBD disease gene
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Hide details for Fouse, Shaun D.Fouse, Shaun D.
2010[Harris, R. Alan]
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Bock, Christoph
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Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications
In: Nature Biotechnology [28], 1097-1105
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Hide details for Fraga, Mario F.Fraga, Mario F.
2012[Fernandez, Agustin F.]
Assenov, Yassen
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A DNA methylation fingerprint of 1628 human samples
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A promoter DNA demethylation landscape of human hematopoietic differentiation
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Hide details for Franco, Gloria R.Franco, Gloria R.
2011[Ruiz, Jeronimo C.]
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Evidence for Reductive Genome Evolution and Lateral Acquisition of Virulence Functions in two Corynebacterium pseudotuberculosis strains
In: PLoS One [6], e18551
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Hide details for Franke, AndreFranke, Andre
2013[Ellinghaus, David]
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Doncheva, Nadezhda T.
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Mayr, Gabriele
Albrecht, Mario
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Association between variants of PRDM1 and NDP52 and Crohn's disease, based on exome sequencing and functional studies
In: Gastroenterology [145], 339-347
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Albrecht, Mario
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Dense genotyping of immune-related disease regions identifies nine new risk loci for primary sclerosing cholangitis
In: Nature Genetics [45], 670-677
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Mayr, Gabriele
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Genome-wide association study for ulcerative colitis identifies risk loci at 7q22 and 22q13 (IL17REL)
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Genome-wide association study identifies a psoriasis susceptibility locus at TRAF3IP2
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Sequence variants in IL10, ARPC2, and multiple other loci contribute to ulcerative colitis
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A genome-wide association scan of nonsynonymous SNPs identifies a susceptibility variant for Crohn disease in ATG16L1
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Mayr, Gabriele
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Systematic association mapping identifies NELL1 as a novel IBD disease gene
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Sarcoidosis is associated with a truncating splice site mutation in BTNL2
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Hide details for Frankish, AdamFrankish, Adam
2007[Tress, Michael L.]
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Albrecht, Mario
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Assenov, Yassen
Blankenburg, Hagen
Huthmacher, Carola
Ramírez, Fidel
Schlicker, Andreas
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Attachment IconThe implications of alternative splicing in the ENCODE protein complement
In: Proceedings of the National Academy of Sciences [104], 5495-5500
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Hide details for Frank, OliverFrank, Oliver
2007[Flockerzi, Aline]
Maydt, Jochen
[Frank, Oliver]
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Lengauer, Thomas
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Attachment IconExpression pattern analysis of transcribed HERV sequences is complicated by ex vitvo recombination
In: Retrovirology [4], 39
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Hide details for Frank, RonaldFrank, Ronald
2006[Boeddrich, Annett]
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Albrecht, Mario
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An arginine/lysine-rich motif is crucial for VCP/p97-mediated modulation of ataxin-3 fibrillogenesis
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Hide details for Fraune, MariaFraune, Maria
2011[Svicher, Valentina]
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Beggel, Bastian
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Role of hepatitis B virus genetic barrier in drug-resistance and immune-escape development
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Role of hepatitis B virus genetic barrier in drug-resistance and immune-escape development
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Hide details for Freudenberg, JanFreudenberg, Jan
2002[Freudenberg, Jan]
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Lengauer, Thomas
A hypergraph-based method for unification of existing protein structure- and sequence-families
In: In Silico Biology [2], 339 - 349
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Hide details for Freund, ChristianFreund, Christian
2005[Gu, Wei]
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Antes, Iris
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Alternative Binding Modes of Polyproline Peptides Binding to the GYF Domain
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Hide details for Friedberg, IddoFriedberg, Iddo
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A large-scale evaluation of computational protein function prediction
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2006[Plotz, Guido]
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Albrecht, Mario
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Attachment IconMutations in the MutSalpha interaction interface of MLH1 can abolish DNA mismatch repair
In: Nucleic Acids Research [34], 6574-6586
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Hide details for Frings, OliverFrings, Oliver
2006Frings, OliverDevelopment of a
Smith-Waterman-Like Multi-Aspect
Alignment Tool
Universität des Saarlandes
Thesis - Bachelor thesis
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2009Adams, Ben
McHardy, Alice
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Lengauer, Thomas
Viral Bioinformatics
In: Modern Genome Annotation - The BioSapiens Network, 429-452
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2009[Frishman, Dmitrij]
Albrecht, Mario
Blankenburg, Hagen
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Protein-protein interactions: analysis and prediction
In: Modern Genome Annotation - The Biosapiens Network, 353-410
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Hide details for Frishman, Dmitrij (ed.)Frishman, Dmitrij (ed.)
2009[Frishman, Dmitrij]
Albrecht, Mario
Blankenburg, Hagen
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Protein-protein interactions: analysis and prediction
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Sommer, Ingolf
Domingues, Francisco S.
Structure to function
In: Modern Genome Annotation, 239-262
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2007[Schulz, Wolfgang A.]
Alexa, Adrian
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Attachment IconFactor interaction analysis for chromosome 8 and DNA methylation alterations highlights innate immune response suppression and cytoskeletal changes in prostate cancer
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Mutations in ABC1 in Tangier disease and familial high-density lipoprotein
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Predicting drug susceptibility of non-small cell lung cancers based on genetic lesions
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Schelhorn, Sven-Eric
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Deep sequencing reveals mutagenic effects of ribavirin during monotherapy of HCV genotype 1-infected patients
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2009[Prosperi, Mattia C. F.]
Altmann, André
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Investigation of expert rule bases, logistic regression, and non-linear machine learning techniques for predicting response to antiretroviral treatment
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Hide details for Funk, ChristopherFunk, Christopher
2013[Radivojac, Predrag]
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Gatzmann, Fanny
Sommer, Ingolf
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A large-scale evaluation of computational protein function prediction
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1
Hide details for Futschik, AndreasFutschik, Andreas
2003Rahnenführer, Jörg
[Futschik, Andreas]
Cost-effective screening for differentially expressed genes in microarray experiments based on normal mixtures
In: Austrian Journal of Statistics [32], 225-238
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Hide details for Gaasterland, TerryGaasterland, Terry
2012[Rost, Burkhard]
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Lengauer, Thomas
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Paving the future: finding suitable ISMB venues
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Hide details for Gabor, BorgulyaGabor, Borgulya
2009[Prosperi, Mattia C. F.]
Altmann, André
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Investigation of expert rule bases, logistic regression, and non-linear machine learning techniques for predicting response to antiretroviral treatment
In: Antiviral Therapy [14], 433-442
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1
Hide details for Gaede, Karoline I.Gaede, Karoline I.
2005[Valentonyte, Ruta]
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[Huse, Klaus]
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Albrecht, Mario
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Lengauer, Thomas
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Sarcoidosis is associated with a truncating splice site mutation in BTNL2
In: Nature Genetics [37], 357-364
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Hide details for Gago, FederigoGago, Federigo
2006[Svicher, Valentina]
Sing, Tobias
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Lengauer, Thomas
Ceccherini-Silberstein, Francesca
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Involvement of novel HIV-1 reverse transcriptase mutations in the regulation of resistance to nucleoside inhibitors
In: Journal of Virology [80], 7186-7198
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Hide details for Gago, F.Gago, F.
2005[Svicher, Valentina]
[Ceccherini-Silberstein, Francesca]
Sing, Tobias
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[Gori, C.]
Beerenwinkel, Niko
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A highly ordered network of HIV-1 RT mutations regulates the continuous escape from antiviral drugs
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2005[Svicher, Valentina]
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Sing, Tobias
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Beerenwinkel, Niko
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Additional Mutations in HIV-1 Reverse Transcriptase are Involved in the Highly Ordered Regulation of NRTI Resistance
In: Proceedings of the 3rd European HIV Drug Resistance Workshop, -
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Hide details for Gailus-Durner, V.Gailus-Durner, V.
2004[Crass, T.]
Antes, Iris
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Buning, Christian
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Lengauer, Thomas
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Sommer, Ingolf
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The Helmholtz Network for Bioinformatics: an integrative web portal for bioinformatics resources
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Hide details for Galao, Rui PedroGalao, Rui Pedro
2007[Scheller, Nicoletta]
[Resa-Infante, Patricia]
[de la Luna, Susana]
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Albrecht, Mario
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Lengauer, Thomas
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[Díez, Juana]
Identification of PatL1, a human homolog to yeast P body component Pat1
In: Biochimica et Biophysica Acta - Molecular Cell Research [1773], 1786-1792
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Hide details for Galata, ValentinaGalata, Valentina
2012Galata, ValentinaApplying Lasso regression to related cell types for gene network astimation
Universität des Saarlandes
Thesis - Bachelor thesis
1
Hide details for Galeota, EugeniaGaleota, Eugenia
2011[Aranda, Bruno]
Blankenburg, Hagen
[Kerrien, Samuel]
[Brinkman, Fiona S.]
[Ceol, Arnaud]
[Chautard, Emilie]
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[Hancock, Robert E. W.]
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[Tyers, Mike]
Albrecht, Mario
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PSICQUIC and PSISCORE: accessing and scoring molecular interactions
In: Nature Methods [8], 528-529
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Hide details for Galias, Zbigniew (ed.)Galias, Zbigniew (ed.)
2003Merkwirth, Christian
[Ogorzalek, Maciej]
[Wichard, Jörg Daniel]
Attachment IconStochastic Gradient Descent Training of Ensembles of DT-CNN Classifiers for Digit Recognition
In: Proceedings of the 16th European Conference on Circuit Theory and Design ECCTD'03, 337-341
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1
Hide details for Gallinaroi, ValentinaGallinaroi, Valentina
2011[Svichera, Valentina]
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Role of hepatitis B virus genetic barrier in drug-resistance and immune-escape development
In: Digestive and Liver Disease [43], 975–983
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Hide details for Gallinaro, ValentinaGallinaro, Valentina
2011[Svicher, Valentina]
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Beggel, Bastian
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Role of hepatitis B virus genetic barrier in drug-resistance and immune-escape development
In: Digestive and Liver Disease [43], 975-983
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Hide details for Galm, OliverGalm, Oliver
2012[Fernandez, Agustin F.]
Assenov, Yassen
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Bock, Christoph
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A DNA methylation fingerprint of 1628 human samples
In: Genome Research [22], 407-419
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Hide details for Gama, J (ed.)Gama, J (ed.)
2005Sing, Tobias
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Beerenwinkel, Niko
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Fätkenheuer, Gerd
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Lengauer, Thomas
Characterization of novel HIV Drug Resistance Mutations using clustering, multidimensional scaling and SVM-based feature ranking
In: Knowledge Discovery in Databases: PKDD 2005., 285-296
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Hide details for Gansner, Emden R. (ed.)Gansner, Emden R. (ed.)
2010Albrecht, Mario
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On open problems in biological network visualization
In: Graph Drawing : 17th International Symposium, GD 2009, 256-267
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Hide details for Garai, ÁgnesGarai, Ágnes
2012[Garai, Ágnes]
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Specificity of linear motifs that bind to a common mitogen-activated protein kinase docking groove
In: Science Signaling [5], ra74,1-ra74,14
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Hide details for García, FedericoGarcía, Federico
2011[Codoner, Francisco]
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Thielen, Alexander
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Dynamic escape of pre-existing raltegravir-resistant HIV-1 from raltegravir selection pressure
In: Antiviral Research [88], 281-286
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Hide details for Garcia, SergioGarcia, Sergio
2000Ramírez, Fidel
[Garcia, Sergio]
GenLab: Laboratorio virtual de genetica
In: Acta Biologica Colombiana [5], 45-48
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Hide details for Garda, Bartlomiej (ed.)Garda, Bartlomiej (ed.)
2003Merkwirth, Christian
[Ogorzalek, Maciej]
[Wichard, Jörg Daniel]
Attachment IconStochastic Gradient Descent Training of Ensembles of DT-CNN Classifiers for Digit Recognition
In: Proceedings of the 16th European Conference on Circuit Theory and Design ECCTD'03, 337-341
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1
Hide details for Garraway, Levi A.Garraway, Levi A.
2009[Sos, Martin L.]
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Hanna, megan
Tolosi, Laura
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Predicting drug susceptibility of non-small cell lung cancers based on genetic lesions
In: Journal of Clinical Investigation [119], 1727-1740
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Hide details for Gatzmann, FannyGatzmann, Fanny
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A large-scale evaluation of computational protein function prediction
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2010Gatzmann, FannyGOdot Sequence - function prediction from protein sequence
Universität des Saarlandes
Thesis - Bachelor thesis
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Hide details for Gaub, S.Gaub, S.
2010Bozek, Katarzyna
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[Lorenzen, S.]
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Circadian transcription in liver
In: Biosystems [102], 61-69
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Hide details for Gaulton, AnnaGaulton, Anna
2011[Aranda, Bruno]
Blankenburg, Hagen
[Kerrien, Samuel]
[Brinkman, Fiona S.]
[Ceol, Arnaud]
[Chautard, Emilie]
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Albrecht, Mario
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PSICQUIC and PSISCORE: accessing and scoring molecular interactions
In: Nature Methods [8], 528-529
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Hide details for Gaul, Wolfgang (ed.)Gaul, Wolfgang (ed.)
2003Rahnenführer, JörgEfficient Clustering Methods for Tumor Classification with Microarrays
In: Proceedings of the 26th Annual Conference of the Gesellschaft für Klassifikation, 670-679
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Hide details for Gaumer, SébastienGaumer, Sébastien
2006[Boeddrich, Annett]
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Albrecht, Mario
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An arginine/lysine-rich motif is crucial for VCP/p97-mediated modulation of ataxin-3 fibrillogenesis
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Hide details for Gazdar, Adi F.Gazdar, Adi F.
2009[Sos, Martin L.]
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[Pfeifer, Martin]
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Hanna, megan
Tolosi, Laura
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Predicting drug susceptibility of non-small cell lung cancers based on genetic lesions
In: Journal of Clinical Investigation [119], 1727-1740
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Hide details for Gazit, RoiGazit, Roi
2011[Zacharek, Sima J.]
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Lung stem cell self-renewal relies on BMI1-dependent control of expression at imprinted loci
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2010[Franke, Andre]
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Mayr, Gabriele
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Genome-wide association study for ulcerative colitis identifies risk loci at 7q22 and 22q13 (IL17REL)
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Sequence variants in IL10, ARPC2, and multiple other loci contribute to ulcerative colitis
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Hide details for Gelfer, AllisonGelfer, Allison
2002[Wellington, Cheryl L.]
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Hide details for Genest, JacquesGenest, Jacques
1999[Marcil, Michel]
[Brooks-Wilson, A.]
[Clee, Susanne M.]
Roomp, Kirsten
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[Yu, L.]
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Mutations in the ABC1 gene in familial HDL deficiency with defective cholesterol efflux
In: The Lancet [354], 1341-6
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Hide details for Genest, Jacques JrGenest, Jacques Jr
2002[Wellington, Cheryl L.]
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Roomp, Kirsten
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Truncation mutations in ABCA1 suppress normal upregulation of full-length ABCA1 by 9-cis-retinoic acid and 22-R-hydroxycholesterol
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Roomp, Kirsten
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Common genetic variation in ABCA1 is associated with altered lipoprotein levels and a modified risk for coronary artery disease
In: Circulation [103], 1198-205
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2000[Clee, Susanne M.]
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Age and residual cholesterol efflux affect HDL cholesterol levels and coronary artery disease in ABCA1 heterozygotes
In: Journal of Clinical Investigation [106], 1263-70
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Hide details for Gerstein, MGerstein, M
2013[Steijger, T]
[Abril, JF]
[Engström,PG]
[Kokocinski, F]
[Abril, JF]
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Schulz, Marcel Holger
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Assessment of transcript reconstruction methods for RNA-seq
In: Nature Methods [10], 1177-84
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Hide details for Getz, GadGetz, Gad
2009[Sos, Martin L.]
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Hanna, megan
Tolosi, Laura
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Predicting drug susceptibility of non-small cell lung cancers based on genetic lesions
In: Journal of Clinical Investigation [119], 1727-1740
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Hide details for Giachino, DanielaGiachino, Daniela
2005[Van Duist, Marjan M.]
Albrecht, Mario
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Lengauer, Thomas
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A new CARD15 mutation in Blau syndrome
In: European Journal of Human Genetics [13], 742-747
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Hide details for Giannella, S.Giannella, S.
2005[Svicher, Valentina]
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Sing, Tobias
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Beerenwinkel, Niko
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A highly ordered network of HIV-1 RT mutations regulates the continuous escape from antiviral drugs
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Additional Mutations in HIV-1 Reverse Transcriptase are Involved in the Highly Ordered Regulation of NRTI Resistance
In: Proceedings of the 3rd European HIV Drug Resistance Workshop, -
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Hide details for Giannotti, Fosca (ed.)Giannotti, Fosca (ed.)
2008Saigo, Hiroto
[Tsuda, Koji]
Iterative Subgraph Mining for Principal Component Analysis.
In: Proceedings of the IEEE International Conference on Data Mining (ICDM2008), DM934
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Hide details for Giaretti, Walter (ed.)Giaretti, Walter (ed.)
2009Feuerbach, Lars
Halachev, Konstantin
Lengauer, Thomas
Bock, Christoph
An exhaustive methode for CpG island annotation
In: Special Issue: Abstracts of the 3rd MC-GARD Meeting, 146-146
Poster
2008Feuerbach, Lars
Christopher, Bock
Halachev, Konstantin
Büch, Joachim
Lengauer, Thomas
Towards Comparative Epigenomics: A Software Toolkit For Cross-Species Epigenome Data Analysis
In: Abstracts of the 2nd MC-GARD Meeting, 230
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Hide details for Gieger, ChristianGieger, Christian
2010[Franke, Andre]
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Mayr, Gabriele
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Genome-wide association study for ulcerative colitis identifies risk loci at 7q22 and 22q13 (IL17REL)
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Mayr, Gabriele
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Genome-wide association study identifies a psoriasis susceptibility locus at TRAF3IP2
In: Nature Genetics [42], 991-995
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Hide details for Giehl, ClaudiaGiehl, Claudia
2012[Adams, David]
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BLUEPRINT to decode the epigenetic signature written in blood
In: Nature Biotechnology [30], 224-226
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Hide details for Gilbert, D. (ed.)Gilbert, D. (ed.)
2004Proceedings Twelfth International Conference on Intelligent Systems for Molecular Biology/Third European Conference on Computional Biology 2004 (ISMB/ECCB 2004)Proceedings
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Hide details for Gilles, RamonaGilles, Ramona
2012[Heger, Eva]
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Lengauer, Thomas
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APOBEC3G/F a one possible driving source for co-receptor switch of the human immunodeficiency virus-1
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APOBEC3G/F as one possible driving force for co-receptor switch of the human immunodeficiency virus-1
In: Medical Microbiology and Immunology [201], 7-16
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Hide details for Gimelbrant, Alexander A.Gimelbrant, Alexander A.
2011[Zacharek, Sima J.]
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Bock, Christoph
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Lung stem cell self-renewal relies on BMI1-dependent control of expression at imprinted loci
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Hide details for Gingeras, TRGingeras, TR
2013[Steijger, T]
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Schulz, Marcel Holger
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Assessment of transcript reconstruction methods for RNA-seq
In: Nature Methods [10], 1177-84
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Hide details for Giorgetti, AlejandroGiorgetti, Alejandro
2007[Tress, Michael L.]
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Attachment IconThe implications of alternative splicing in the ENCODE protein complement
In: Proceedings of the National Academy of Sciences [104], 5495-5500
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Hide details for Girard, LucGirard, Luc
2009[Sos, Martin L.]
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Hanna, megan
Tolosi, Laura
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Predicting drug susceptibility of non-small cell lung cancers based on genetic lesions
In: Journal of Clinical Investigation [119], 1727-1740
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1
Hide details for Girolami, Mark (ed.)Girolami, Mark (ed.)
2012Bogojeska, Jasmina
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Lengauer, Thomas
History-alignment models for bias-aware prediction of virological response to HIV combination therapy
In: Proceedings of the Fifteenth International Conference on Artificial Intelligence and Statistics (AISTATS 2012), 118-126
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Hide details for Giron-Monzon, LuisGiron-Monzon, Luis
2006[Plotz, Guido]
[Welsch, Christoph]
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Albrecht, Mario
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Biondi, Ricardo M.
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Attachment IconMutations in the MutSalpha interaction interface of MLH1 can abolish DNA mismatch repair
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Hide details for Glaab, EnricoGlaab, Enrico
2006Glaab, EnricoOn the predictability of CpG methylation in human tissue at single basepair resolution
Universität des Saarlandes
Thesis - Bachelor thesis
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Hide details for Gladman, Dafna D.Gladman, Dafna D.
2010[Ellinghaus, Eva]
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Mayr, Gabriele
Albrecht, Mario
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[Weichenthal, Michael]
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Genome-wide association study identifies a psoriasis susceptibility locus at TRAF3IP2
In: Nature Genetics [42], 991-995
Journal Article
1
Hide details for Gladyshev, Vadim N.Gladyshev, Vadim N.
2005[Castellano, Sergi]
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Diversity and functional plasticity of eukaryotic selenoproteins: Identification and characterization of the SelJ family
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Hide details for Glascock, ChristopherGlascock, Christopher
2010[Swenson, Luke C.]
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Thielen, Alexander
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Improved detection of CXCR4-using HIV by V3 genotyping: application of population-based and "deep" sequencing to plasma RNA and proviral DNA
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Low, Andrew J.
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Improved detection of X4 virus by V3 genotyping: application to plasma RNA and proviral DNA
In: Antiviral Therapy, A99
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Hide details for Glass, BärbelGlass, Bärbel
2012Kalinina, Olga V.
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[Kräusslich, Hans-Georg]
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Computational Identification of Novel Amino-Acid Interactions in HIV Gag via Correlated Evolution
In: PLoS ONE [7], e42468,1-e42468,5
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Hide details for Glas, JürgenGlas, Jürgen
2013[Ellinghaus, David]
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Doncheva, Nadezhda T.
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Mayr, Gabriele
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Association between variants of PRDM1 and NDP52 and Crohn's disease, based on exome sequencing and functional studies
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Hide details for Glatting, K.-H.Glatting, K.-H.
2004[Crass, T.]
Antes, Iris
[Basekow, R.]
[Bork, P.]
Buning, Christian
[Christensen, M.]
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[Gailus-Durner, V.]
[Glatting, K.-H.]
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Lengauer, Thomas
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Sommer, Ingolf
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The Helmholtz Network for Bioinformatics: an integrative web portal for bioinformatics resources
In: Bioinformatics [20], 268-270
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Hide details for Gludish, David W.Gludish, David W.
2011[Zacharek, Sima J.]
[Fillmore, Christine M.]
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Bock, Christoph
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Lung stem cell self-renewal relies on BMI1-dependent control of expression at imprinted loci
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Hide details for Gnirke, AndreasGnirke, Andreas
2013[Ziller, Michael J.]
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Müller, Fabian
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Charting a dynamic DNA methylation landscape of the human genome
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Genomic distribution and inter-sample variation of non-CpG methylation across human cell types
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Reference Maps of Human ES and iPS Cell Variation Enable High-Throughput Characterization of Pluripotent Cell Lines
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Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications
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Attachment IconGenome-scale DNA methylation mapping of clinical samples at single-nucleotide resolution
In: Nature Methods [7], 133-136
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Attachment IconQuantitative comparison of genome-wide DNA methylation mapping technologies
In: Nature Biotechnology [28], 1106-1114
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Hide details for Gobbi, SilviaGobbi, Silvia
2008[Lucas, Simon]
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Novel Aldosterone Synthase Inhibitors with Extended Carbocyclic Skeleton by a Combined Ligand-Based and Structure-Based Drug Design Approach
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Hide details for Goble, C. (ed.)Goble, C. (ed.)
2004Proceedings Twelfth International Conference on Intelligent Systems for Molecular Biology/Third European Conference on Computional Biology 2004 (ISMB/ECCB 2004)Proceedings
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Hide details for Goesmann, AlexanderGoesmann, Alexander
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Baumbach, Jan
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RhizoRegNet - A database of rhizobial transcription factors and regulatory networks.
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Hide details for Gößling, F.Gößling, F.
2004[Crass, T.]
Antes, Iris
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Buning, Christian
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The Helmholtz Network for Bioinformatics: an integrative web portal for bioinformatics resources
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Hide details for Gógl, GergoGógl, Gergo
2012[Garai, Ágnes]
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Specificity of linear motifs that bind to a common mitogen-activated protein kinase docking groove
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Antes, Iris
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Buning, Christian
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The Helmholtz Network for Bioinformatics: an integrative web portal for bioinformatics resources
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Hide details for Golatta, MichaelGolatta, Michael
2004Albrecht, Mario
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Structural and functional analysis of ataxin-2 and ataxin-3
In: European Journal of Biochemistry [271], 3155-3170
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Hide details for Goldman, N. (ed.)Goldman, N. (ed.)
2004Proceedings Twelfth International Conference on Intelligent Systems for Molecular Biology/Third European Conference on Computional Biology 2004 (ISMB/ECCB 2004)Proceedings
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Hide details for Goll, JohannesGoll, Johannes
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Hide details for Gomez Merino, Fernando Carlos (ed.)Gomez Merino, Fernando Carlos (ed.)
2010Ramirez, FidelTutorial Cytoscape
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A Prognostic DNA Methylation Signature for Stage I Non-Small-Cell Lung Cancer
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High Concordance between the Position-Specific Scoring Matrix and Geno2pheno Algorithms for Genotypic Interpretation of HIV-1 Tropism: V3 Length as the Major Cause of Disagreement
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High Concordance between the Position-Specific Scoring Matrix and Geno2pheno Algorithms for Genotypic Interpretation of HIV-1 Tropism: V3 Length as the Major Cause of Disagreement
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Association between variants of PRDM1 and NDP52 and Crohn's disease, based on exome sequencing and functional studies
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Current V3 genotyping algorithms are inadequate for predicting X4 co-receptor usage in clinical isolates
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Role of hepatitis B virus genetic barrier in drug-resistance and immune-escape development
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Additional Mutations in HIV-1 Reverse Transcriptase are Involved in the Highly Ordered Regulation of NRTI Resistance
In: Proceedings of the 3rd European HIV Drug Resistance Workshop, -
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Hide details for Gotthardt, Daniel NilsGotthardt, Daniel Nils
2013[Liu, Jimmy Z.]
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Doncheva, Nadezhda T.
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Mayr, Gabriele
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Albrecht, Mario
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Dense genotyping of immune-related disease regions identifies nine new risk loci for primary sclerosing cholangitis
In: Nature Genetics [45], 670-677
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Hide details for Gough, JulianGough, Julian
2013[Radivojac, Predrag]
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A large-scale evaluation of computational protein function prediction
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Hide details for Goulart, Luiz R.Goulart, Luiz R.
2011[Ruiz, Jeronimo C.]
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Evidence for Reductive Genome Evolution and Lateral Acquisition of Virulence Functions in two Corynebacterium pseudotuberculosis strains
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Hide details for Graf, ThomasGraf, Thomas
2012[Adams, David]
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BLUEPRINT to decode the epigenetic signature written in blood
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2012[Fernandez, Agustin F.]
Assenov, Yassen
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2009[Sos, Martin L.]
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2004Proceedings Twelfth International Conference on Intelligent Systems for Molecular Biology/Third European Conference on Computional Biology 2004 (ISMB/ECCB 2004)Proceedings
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Hide details for Grigorian, NataliaGrigorian, Natalia
2009[Mihm, Ulrike]
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Antes, Iris
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Attachment IconDNA methylation analysis of chromosome 21 gene promoters at single base pair and single allele resolution
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Attachment IconVariants in a novel epidermal collagen gene (COL29A1) are associated with atopic dermatitis
In: PLoS Biology [5], e242.1952-1961
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Hide details for Grynberg, PriscilaGrynberg, Priscila
2011[Ruiz, Jeronimo C.]
[D'Afonseca, Vivian]
[Silva, Artur]
[Ali, Amjad]
[Pinto, Anne C.]
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[Lopes, Debora O.]
[Dorella, Fernanda A.]
[Pacheco, Luis G. C.]
[Costa, Marcilia P.]
[Turk, Meritxell Z.]
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[Moraes, Pablo M. R. O.]
[Soares, Siomar C.]
[Almeida, Sintia S.]
[Castro, Thiago L. P.]
[Abreu, Vinicius A. C.]
[Trost, Eva]
Baumbach, Jan
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[Schneider, Maria P. C.]
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[Cerdeira, Louise T.]
[Ramos, Rommel T. J.]
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[Dominitini, Anderson]
[Resende, Daniela M.]
[Coser, Elisangela M.]
[Oliveira, Luciana M.]
[Pedrosa, Andre L.]
[Vieira, Carlos U.]
[Guimaraes, Claudia T.]
[Bartholomeu, Daniela C.]
[Oliveira, Diana M.]
[Santos, Fabricio R.]
[Rabelo, Elida Mara]
[Lobo, Francisco P.]
[Franco, Gloria R.]
[Costa, Ana Flavia]
[Castro, Ieso M.]
[Dias, Silvia Regina]
[Ferro, Jesus A.]
[Ortega, Jose Miguel]
[Paiva, Luciano V.]
[Goulart, Luiz R.]
[Almeida, Juliana Franco]
[Ferro, Maria Ines]
[Carneiro, Newton P.]
[Falcao, Paula R. K.]
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[Teixeira, Santuza M. R.]
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[Oliveira, Sergio C.]
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[Oliveira, Guilherme C.]
[Azevedo, Vaco]
Evidence for Reductive Genome Evolution and Lateral Acquisition of Virulence Functions in two Corynebacterium pseudotuberculosis strains
In: PLoS One [6], e18551
Electronic Journal Article
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Hide details for Gubertinig, GuidoGubertinig, Guido
2011[Svichera, Valentina]
[Centoa, Valeria]
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[Mercurioa, Fabio]
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Beggel, Bastian
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Role of hepatitis B virus genetic barrier in drug-resistance and immune-escape development
In: Digestive and Liver Disease [43], 975–983
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Hide details for Gubertini, GuidoGubertini, Guido
2011[Svicher, Valentina]
[Cento, Valeria]
[Salpini, Romina]
[Mercurio, Fabio]
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Beggel, Bastian
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Role of hepatitis B virus genetic barrier in drug-resistance and immune-escape development
In: Digestive and Liver Disease [43], 975-983
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Hide details for Gudjonsson, JohannGudjonsson, Johann
2010[Ellinghaus, Eva]
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Mayr, Gabriele
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Genome-wide association study identifies a psoriasis susceptibility locus at TRAF3IP2
In: Nature Genetics [42], 991-995
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1
Hide details for Gueney, LGueney, L
2012[Sierra, Saleta]
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Pironti, Alejandro
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Thielen, Alexander
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Optimisation of baseline genotypic testing for safe and efficient maraviroc administration
In: Journal of the International AIDS Society, 101-102
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Hide details for Günther, SimoneGünther, Simone
2007[Hampe, Jochen]
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Albrecht, Mario
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Lengauer, Thomas
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A genome-wide association scan of nonsynonymous SNPs identifies a susceptibility variant for Crohn disease in ATG16L1
In: Nature Genetics [39], 207-211
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Hide details for Gürtler, LutzGürtler, Lutz
2012[Obermeier, Martin]
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HIV2EU: supporting standardized HIV-2 drug resistance interpretation in Europe
In: Journal of the International AIDS Society, 135
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Hide details for Guigó, RGuigó, R
2013[Steijger, T]
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Assessment of transcript reconstruction methods for RNA-seq
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Hide details for Guigo, RodericGuigo, Roderic
2012[Adams, David]
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Attachment IconThe implications of alternative splicing in the ENCODE protein complement
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Diversity and functional plasticity of eukaryotic selenoproteins: Identification and characterization of the SelJ family
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Hide details for Guimaraes, Claudia T.Guimaraes, Claudia T.
2011[Ruiz, Jeronimo C.]
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Evidence for Reductive Genome Evolution and Lateral Acquisition of Virulence Functions in two Corynebacterium pseudotuberculosis strains
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Hide details for Gunopulos, Dimitrios (ed.)Gunopulos, Dimitrios (ed.)
2008Saigo, Hiroto
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Iterative Subgraph Mining for Principal Component Analysis.
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Hide details for Gunsteren van, Wilfred F.Gunsteren van, Wilfred F.
2002Antes, Iris
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Molecular dynamics simulations of photoactive yellow protein (PYP) in three states of its photocycle: a comparison with X-ray and NMR data and analysis of the effects of Glu46 deprotonation and mutation
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Hide details for Guo, XinGuo, Xin
2006Guo, XinImproving Fold Recognition Using Protein
and Domain Interactions
Universität des Saarlandes
Thesis - Masters thesis
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Hide details for Guo, YuhongGuo, Yuhong
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A large-scale evaluation of computational protein function prediction
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2005[Costello, Christine M.]
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Hahn, Andreas
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Dissection of the inflammatory bowel disease transcriptome using genome-wide cDNA microarrays identifies novel candidate disease genes
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Hide details for Gusfield, Dan (ed.)Gusfield, Dan (ed.)
2004Beerenwinkel, Niko
Rahnenführer, Jörg
Däumer, Martin
Hoffmann, Daniel
Kaiser, Rolf
Selbig, Joachim
Lengauer, Thomas
Learning multiple evolutionary pathways from cross-sectional data
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Hide details for Gutierrez-Achury, JavierGutierrez-Achury, Javier
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Albrecht, Mario
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Dense genotyping of immune-related disease regions identifies nine new risk loci for primary sclerosing cholangitis
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Hide details for Gut, IvoGut, Ivo
2012[Adams, David]
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Lengauer, Thomas
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BLUEPRINT to decode the epigenetic signature written in blood
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Reference Maps of Human ES and iPS Cell Variation Enable High-Throughput Characterization of Pluripotent Cell Lines
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Bock, Christoph
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Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications
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Bock, Christoph
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Attachment IconGenome-scale DNA methylation mapping of clinical samples at single-nucleotide resolution
In: Nature Methods [7], 133-136
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Attachment IconQuantitative comparison of genome-wide DNA methylation mapping technologies
In: Nature Biotechnology [28], 1106-1114
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Hide details for Gu, JunchenGu, Junchen
2010[Harris, R. Alan]
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Bock, Christoph
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Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications
In: Nature Biotechnology [28], 1097-1105
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Hide details for Gu, WeiGu, Wei
2005[Gu, Wei]
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Antes, Iris
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Alternative Binding Modes of Polyproline Peptides Binding to the GYF Domain
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Hide details for Gwinner, FrederikGwinner, Frederik
2009Gwinner, FrederikAssessing the Conservation of Protein Function on Evolutionary Defined Patches
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Hide details for "{o}nigschmid, Peter"{o}nigschmid, Peter
2013[Radivojac, Predrag]
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2006[Boeddrich, Annett]
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Albrecht, Mario
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An arginine/lysine-rich motif is crucial for VCP/p97-mediated modulation of ataxin-3 fibrillogenesis
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Hide details for Haasis, Klaus (ed.)Haasis, Klaus (ed.)
2006Bock, Christoph
Halachev, Konstantin
Lengauer, Thomas
Bioinformatisches Data Mining erschließt neue Strategien gegen Krebs
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2007[Schulz, Wolfgang A.]
Alexa, Adrian
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Attachment IconFactor interaction analysis for chromosome 8 and DNA methylation alterations highlights innate immune response suppression and cytoskeletal changes in prostate cancer
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Dissection of the inflammatory bowel disease transcriptome using genome-wide cDNA microarrays identifies novel candidate disease genes
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Sarcoidosis is associated with a truncating splice site mutation in BTNL2
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2012[Reuter, Stefan]
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Lengauer, Thomas
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Risk factors associated with older age in treatment-naive HIV-positive patients
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Lengauer, Thomas
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Attachment IconErratum to: Prevalence and characteristics of hepatitis B and C virus infections in treatment-naïve HIV-infected patients.
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Lengauer, Thomas
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Prevalence and characteristics of hepatitis B and C virus infections in treatment-naïve HIV-infected patients
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Hide details for Häussinger, Dieter (ed.)Häussinger, Dieter (ed.)
2004Beerenwinkel, NikoDas Arevir-Projekt : neue Wege zur Optimierung von Anti-HIV-Therapien
In: Resistenz in der HIV-Therapie : Diagnostik und Management, 94-98
Part of a Book
2004Beerenwinkel, NikoMethoden zur Interpretation genotypischer Resistenztests
In: Resistenz in der HIV-Therapie : Diagnostik und Management, 66-68
Part of a Book
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2013Beggel, Bastian
[Münk, C.]
[Däumer, M.]
[Hauck, K.]
[Häussinger, D.]
Lengauer, Thomas
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Full genome ultra-deep pyrosequencing associates G-to-A-hypermutation of the hepatitis B virus genome with the natural progression of hepatitis B
In: Journal of Viral Hepatitis [12], 882-889
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2007European Journal of Medical ResearchJournal
4
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2005Hahn, Andreas
Rahnenführer, Jörg
Talwar, Priti
Lengauer, Thomas
Confirmation of human protein interaction data by human expression data
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Hahn, Andreas
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Albrecht, Mario
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Lengauer, Thomas
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Dissection of the inflammatory bowel disease transcriptome using genome-wide cDNA microarrays identifies novel candidate disease genes
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Lengauer, Thomas
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Expression analysis for inflammatory bowel disease
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[Lu, Tim]
Lengauer, Thomas
[Schreiber, Stefan]
Attachment IconExpression analysis for inflammatory bowel disease
In: Proceedings of the n?th Conference on, ?
Poster
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Hide details for Haid, CarlaHaid, Carla
2007Haid, CarlaBSIFlex: Binding Site Identification including protein flexibility
Universität des Saarlandes
Thesis - Masters thesis
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Hide details for Halachev, KonstantinHalachev, Konstantin
2013Tolosi, Laura
[Theißen, J.]
Halachev, Konstantin
[Hero, B.]
[Berthold, F.]
Lengauer, Thomas
A method for finding consensus breakpoints in the cancer genome from copy number data
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Bast, H.
Lengauer, Thomas
Bock, Christoph
Interactive exploration of large genome and epigenome datasets in real time
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Halachev, Konstantin
Assenov, Yassen
Mueller, Fabian
Bock, Christoph
Lengauer, Thomas
Analyzing epigenome data in context of genome evolution and human diseases
In: Evolutionary Genomics : Statistical and Computational Methods, Volume 2, 431-467
In: Methods of Molecular Biology [856], 431-467
Part of a Book
2012Halachev, Konstantin
[Bast, Hannah]
Albrecht, Felipe
Lengauer, Thomas
Bock, Christoph
Attachment IconEpiExplorer: live exploration and global analysis of large epigenomic datasets
In: Genome Biology [13], R96,1-R96,14
Electronic Journal Article
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Halachev, Konstantin
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Lengauer, Thomas
Web-based analysis of (epi-) genome data using EpiGRAPH and Galaxy.
In: Genetic Variation : Methods and Protocols, 275-296
In: Methods of Molecular Biology [628], 275-296
Part of a Book
2009Feuerbach, Lars
Halachev, Konstantin
Lengauer, Thomas
Bock, Christoph
An exhaustive methode for CpG island annotation
In: Special Issue: Abstracts of the 3rd MC-GARD Meeting, 146-146
Poster
2009Bock, Christoph
Halachev, Konstantin
Büch, Joachim
Lengauer, Thomas
Attachment IconEpiGRAPH: user-friendly software for statistical analysis and prediction of (epi)genomic data
In: Genome Biology [10], R14.1-R14.14
Journal Article
2008Feuerbach, Lars
Christopher, Bock
Halachev, Konstantin
Büch, Joachim
Lengauer, Thomas
Towards Comparative Epigenomics: A Software Toolkit For Cross-Species Epigenome Data Analysis
In: Abstracts of the 2nd MC-GARD Meeting, 230
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2006Bock, Christoph
Halachev, Konstantin
Lengauer, Thomas
Bioinformatisches Data Mining erschließt neue Strategien gegen Krebs
In: Aktuelle Trends in der Softwareforschung, 91-99
Part of a Book
2006Halachev, KonstantinEpiGRAPHregression: A toolkit for (epi-)genomic correlation analysis and prediction of quantitative attributes
Universität des Saarlandes
Thesis - Masters thesis
1
Hide details for Halachev, K.Halachev, K.
2012Halachev, K.
[Bast, H.]
Albrecht, F.
Lengauer, Thomas
Bock, Christoph
EpiExplorer: live exploration and global analysis of large epigenomic datasets
In: Genome Biology [13], R96,1-R96,14
Journal Article
1
Hide details for Halfvarson, JonasHalfvarson, Jonas
2013[Ellinghaus, David]
[Zhang, Hu]
[Zeissig, Sebastian]
[Lipinski, Simone]
[Till, Andreas]
[Jiang, Tao]
[Stade, Björn]
[Bromberg, Yana]
[Ellinghaus, Eva]
[Keller, Andreas]
[Rivas, Manuel A.]
[Skieceviciene, Jurgita]
Doncheva, Nadezhda T.
[Liu, Xiao]
[Liu, Qing]
[Jiang, Fuman]
[Forster, Michael]
Mayr, Gabriele
Albrecht, Mario
[Häsler, Robert]
[Boehm, Bernhard O.]
[Goodall, Jane]
[Berzuini, Carlo R.]
[Lee, James]
[Andersen, Vibeke]
[Vogel, Ulla]
[Kupcinskas, Limas]
[Kayser, Manfred]
[Krawczak, Michael]
[Nikolaus, Susanna]
[Weersma, Rinse K.]
[Ponsioen, Cyriel Y.]
[Sans, Miquel]
[Wijmenga, Cisca]
[Strachan, David P.]
[McArdle, Wendy L.]
[Vermeire, Séverine]
[Rutgeerts, Paul]
[Sanderson, Jeremy D.]
[Mathew, Christopher G.]
[Vatn, Morten H.]
[Wang, Jun]
[Nöthen, Markus M.]
[Duerr, Richard H.]
[Büning, Carsten]
[Brand, Stephan]
[Glas, Jürgen]
[Winkelmann, Juliane]
[Illig, Thomas]
[Latiano, Anna]
[Annese, Vito]
[Halfvarson, Jonas]
[D'Amato, Mauro]
[Daly, Mark J.]
[Nothnagel, Michael]
[Karlsen, Tom H.]
[Subramani, Suresh]
[Rosenstiel, Philip]
[Schreiber, Stefan]
[Parkes, Miles]
[Franke, Andre]
Association between variants of PRDM1 and NDP52 and Crohn's disease, based on exome sequencing and functional studies
In: Gastroenterology [145], 339-347
Journal Article
1
Hide details for Hall, RabeaHall, Rabea
2007[Kupfer, Bernd]
Sing, Tobias
Schüffler, Peter
[Hall, Rabea]
[Kurz, Ralf]
[McKeown, Astrid]
[Schneweis, Karl-Eduard]
[Eberl, Wolfgang]
[Oldenburg, Johannes]
[Brackmann, Hans H.]
[Rockstroh, Jürgen K.]
[Spengler, Ulrich]
Däumer, Martin
[Kaiser, Rolf]
Lengauer, Thomas
[Matz, Bertfried]
Fifteen years of env C2V3C3 evolution in six individuals clonally infected with human immunodeficiency virus type 1
In: Journal of Medical Virology [79], 1629-1639
Journal Article
2
Hide details for Hamilton, Peter (ed.)Hamilton, Peter (ed.)
2009Feuerbach, Lars
Halachev, Konstantin
Lengauer, Thomas
Bock, Christoph
An exhaustive methode for CpG island annotation
In: Special Issue: Abstracts of the 3rd MC-GARD Meeting, 146-146
Poster
2008Feuerbach, Lars
Christopher, Bock
Halachev, Konstantin
Büch, Joachim
Lengauer, Thomas
Towards Comparative Epigenomics: A Software Toolkit For Cross-Species Epigenome Data Analysis
In: Abstracts of the 2nd MC-GARD Meeting, 230
Electronic Proceedings Article
1
Hide details for Hamouda, O. (ed.)Hamouda, O. (ed.)
2007European Journal of Medical ResearchJournal
6
Hide details for Hampe, JochenHampe, Jochen
2007[Hampe, Jochen]
[Franke, Andre]
[Rosenstiel, Philip]
[Till, Andreas]
[Teuber, Markus]
[Huse, Klaus]
Albrecht, Mario
Mayr, Gabriele
[De La Vega, Francisco M.]
[Briggs, Jason]
[Günther, Simone]
[Prescott, Natalie J.]
[Onnie, Clive M.]
[Häsler, Robert]
[Sipos, Bence]
[Fölsch, Ulrich R.]
Lengauer, Thomas
[Platzer, Matthias]
[Mathew, Christopher G.]
[Krawczak, Michael]
[Schreiber, Stefan]
A genome-wide association scan of nonsynonymous SNPs identifies a susceptibility variant for Crohn disease in ATG16L1
In: Nature Genetics [39], 207-211
Journal Article
2007[Franke, Andre]
[Hampe, Jochen]
[Rosenstiel, Philip]
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[Little, Randall D.]
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[Balschun, Tobias]
[Wittig, Michael]
[ElSharawy, Abdou]
Mayr, Gabriele
Albrecht, Mario
[Prescott, Natalie J.]
[Onnie, Clive M.]
[Fournier, Hélène]
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[Radelof, Uwe]
[Platzer, Matthias]
[Mathew, Christopher G.]
[Stoll, Monika]
[Krawczak, Michael]
[Nürnberg, Peter]
[Schreiber, Stefan]
Systematic association mapping identifies NELL1 as a novel IBD disease gene
In: PLoS ONE [2], e691.1-13
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2005[Costello, Christine M.]
[Mah, Nancy]
[Häsler, Robert]
[Rosenstiel, Philip]
[Waetzig, Georg H.]
Hahn, Andreas
[Lu, Tim]
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Albrecht, Mario
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[Lucius, Ralph]
[Klöppel, Günther]
[Eickhoff, Holger]
[Lehrach, Hans]
Lengauer, Thomas
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Dissection of the inflammatory bowel disease transcriptome using genome-wide cDNA microarrays identifies novel candidate disease genes
In: PLoS Medicine [2], 771-787
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2005[Schreiber, Stefan]
[Rosenstiel, Philip]
Albrecht, Mario
[Hampe, Jochen]
[Krawczak, Michael]
Genetics of Crohn disease, an archetypal inflammatory barrier disease
In: Nature Reviews Genetics [6], 376-388
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2005[Valentonyte, Ruta]
[Hampe, Jochen]
[Huse, Klaus]
[Rosenstiel, Philip]
Albrecht, Mario
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[Gaede, Karoline I.]
[Franke, Andre]
[Haesler, Robert]
[Koch, Andreas]
Lengauer, Thomas
[Seegert, Dirk]
[Reiling, Norbert]
[Ehlers, Stefan]
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[Platzer, Mathias]
[Krawczak, Michael]
[Müller-Quernheim, Joachim]
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[Schreiber, Stefan]
Sarcoidosis is associated with a truncating splice site mutation in BTNL2
In: Nature Genetics [37], 357-364
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2004[Stoll, Monika]
[Corneliussen, Brit]
[Costello, Christine M.]
[Waetzig, Georg H.]
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Albrecht, Mario
[Croucher, Peter J.P.]
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Lengauer, Thomas
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[Lagerstrom-Fermer, Maria]
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Genetic variation in DLG5 is associated with inflammatory bowel disease
In: Nature Genetics [36], 376-380
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Hide details for Hamp, TobiasHamp, Tobias
2013[Radivojac, Predrag]
[Clark, Wyatt T]
[Oron, Tal Ronnen]
[Schnoes, Alexandra M]
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[Yunes, Jeffrey M]
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[Casadio, Rita]
[Wang, Zheng]
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[Holm, Liisa]
[Cozzetto, Domenico]
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[Venner, Eric]
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[Yang, Haixuan]
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[Paccanaro, Alberto]
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[Ka\ss ner, Rebecca]
[Seemayer, Stefan]
[Vicedo, Esmeralda]
[Schaefer, Christian]
[Achten, Dominik]
[Auer, Florian]
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[H\"{o}nigschmid, Peter]
[Hopf, Thomas A]
[Kaufmann, Stefanie]
[Kiening, Michael]
[Krompass, Denis]
[Landerer, Cedric]
[Mahlich, Yannick]
[Roos, Manfred]
[Bj\"{o}rne, Jari]
[Salakoski, Tapio]
[Wong, Andrew]
[Shatkay, Hagit]
Gatzmann, Fanny
Sommer, Ingolf
[Wass, Mark N]
[Sternberg, Michael J E]
[Skunca, Nives]
[Supek, Fran]
[Bo\v{s}njak, Matko]
[Panov, Pan\v{c}e]
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[Kourmpetis, Yiannis A I]
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[Braak, Cajo J F Ter]
[Zhou, Yuanpeng]
[Gong, Qingtian]
[Dong, Xinran]
[Tian, Weidong]
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[Mooney, Sean D]
[Friedberg, Iddo]
A large-scale evaluation of computational protein function prediction
In: Nature Methods [10], 221-227
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1
Hide details for Hancock, Robert E. W.Hancock, Robert E. W.
2011[Aranda, Bruno]
Blankenburg, Hagen
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[Brinkman, Fiona S.]
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Albrecht, Mario
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PSICQUIC and PSISCORE: accessing and scoring molecular interactions
In: Nature Methods [8], 528-529
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1
Hide details for Hanc, YueHanc, Yue
2011[Svichera, Valentina]
[Centoa, Valeria]
[Salpinia, Romina]
[Mercurioa, Fabio]
[Fraune, Maria]
Beggel, Bastian
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[Gorid, Caterina]
[Wittkope, Linda]
[Bertolif, Ada]
[Michelig, Valeria]
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[Angelicoa, Mario]
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[Zhangc, Xin Xin]
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[Ceccherini-Silbersteina, Francesca]
[Pernoa, Carlo Federico]
Role of hepatitis B virus genetic barrier in drug-resistance and immune-escape development
In: Digestive and Liver Disease [43], 975–983
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5
Hide details for Hanisch, DanielHanisch, Daniel
2002[Freudenberg, Jan]
[Zimmer, Ralf]
[Hanisch, Daniel]
Lengauer, Thomas
A hypergraph-based method for unification of existing protein structure- and sequence-families
In: In Silico Biology [2], 339 - 349
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2002[Hoffmann, Daniel]
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Albrecht, Mario
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A new method for the fast solution of protein-3D-structures, combining experiments and bioinformatics
In: Coupling of Biological and Electronic Systems: Proceedings of the 2nd Caesarium, Bonn, 1-3 November 2000, 59-78
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2002[Hanisch, Daniel]
[Zien, Alexander]
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Lengauer, Thomas
Co-clustering of biological networks and gene expression data
In: Proceedings of the Tenth Conference on Intelligent Systems for Molecular Biology (ISMB 2002), 145-154
Proceedings Article
2002Albrecht, Mario
[Hanisch, Daniel]
[Zimmer, Ralf]
Lengauer, Thomas
Attachment IconImproving fold recognition of protein threading by experimental distance constraints
In: In Silico Biology [2], 325-337
Journal Article
2002[Hanisch, Daniel]
[Zimmer, Ralf]
Lengauer, Thomas
ProML - the Protein Markup Language for specification of protein sequences, structures and families
In: In Silico Biology [2], 313 - 324
Journal Article
1
Hide details for Hanna, meganHanna, megan
2009[Sos, Martin L.]
[Michel, Kathrin]
[Zander, Thomas]
[Weiss, Jonathan]
[Frommolt, Peter]
[Pfeifer, Martin]
[Li, Danan]
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[Koker, Mirjam]
[Fischer, Florian]
[Shimamura, Takeshi]
[Rauh, Daniel]
[Mermel, Craig]
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[Stückrath, Isabel]
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[Lin, William]
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[Shah, Kinjal]
[LaFramboise, Thomas]
[Moriarty, Whei F.]
Hanna, megan
Tolosi, Laura
[Rahnenführer, Jörg]
[Verhaak, Roel]
[Chiang, Derek]
[Getz, Gad]
[Hellmich, Martin]
[Wolf, Jürgen]
[Girard, Luc]
[Peyton, Michael]
[Weir, Barbara A.]
[Chen, Tzu-Hsiu]
[Greulich, Heidi]
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[Shapiro, Geoffrey I.]
[Garraway, Levi A.]
[Gazdar, Adi F.]
[Minna, John D.]
[Meyerson, Matthew]
[Wong, Kwok-Kin]
[Thomas, Roman K.]
Predicting drug susceptibility of non-small cell lung cancers based on genetic lesions
In: Journal of Clinical Investigation [119], 1727-1740
Journal Article
1
Hide details for Hannemann, A.Hannemann, A.
2004[Hannemann, A.]
[Schön, J.C.]
[Jansen, M.]
[Putz, H.]
Lengauer, Thomas
Modelling amorphous Si3B3N7: Structure and elastic properties
In: Physical Review [B 70], 144201-144201
Journal Article
1
Hide details for Hannemann, FrankHannemann, Frank
2011[Bleif, Sabrina]
[Hannemann, Frank]
[Lisurek, Michael]
[von Kries, Jens Peter]
[Zapp, Josef]
Dietzen, Matthias
[Antes, Iris]
[Bernhardt, Rita]
Identification of CYP106A2 as a Regioselective Allylic Bacterial Diterpene Hydroxylase
In: ChemBioChem [12], 576-582
Journal Article
1
Hide details for Hannenhalli, Sridhar (ed.)Hannenhalli, Sridhar (ed.)
2002[Zien, Alexander]
[Fluck, Juliane]
[Zimmer, Ralf]
Lengauer, Thomas
Microarrays: How Many Do You Need?
In: Proceedings of the Sixth Annual Conference on Research in Computational Molecular Biology (RECOMB2002), 321-330
Proceedings Article
1
Hide details for Hansen, Mark H. (ed.)Hansen, Mark H. (ed.)
2003Rahnenführer, JörgStatistical Inference for Clustering Microarrays
In: Proceedings of the MSRI Workshop: Nonlinear Estimation and Classification, 323-332
Proceedings Article
1
Hide details for Han, YueHan, Yue
2011[Svicher, Valentina]
[Cento, Valeria]
[Salpini, Romina]
[Mercurio, Fabio]
[Fraune, Maria]
Beggel, Bastian
[Han, Yue]
[Gori, Caterina]
[Wittkop, Linda]
[Bertoli, Ada]
[Micheli, Valeria]
[Gubertini, Guido]
[Longo, Roberta]
[Romano, Sara]
[Visca, Michela]
[Gallinaro, Valentina]
[Marino, Nicoletta]
[Mazzotta, Francesco]
[De Sanctis, Giuseppe Maria]
[Fleury, Hervè]
[Trimoulet, Pascale]
[Angelico, Mario]
[Cappiello, Giuseppina]
[Zhang, Xin Xin]
[Verheyen, Jens]
[Ceccherini-Silberstein, Francesca]
[Perno, Carlo Federico]
Role of hepatitis B virus genetic barrier in drug-resistance and immune-escape development
In: Digestive and Liver Disease [43], 975-983
Journal Article
1
Hide details for Harigan, RichardHarigan, Richard
2010[Zazzi, Maurizio]
[Kaiser, Rolf]
[Sönnerborg, Anders]
[Struck, Daniel]
Altmann, Andre
[Prosperi, Mattia C. F.]
[Rosen-Zvi, Michal]
[Petroczi, Andrea]
[Peres, Yardena]
[Schülter, Eugen]
[Boucher, Charles]
[Brun-Vezinet, Francoise]
[Harigan, Richard]
[Morris, Lynn]
[Obermeier, Martin]
[Perno, Federico]
[Shafer, Robert]
[Vandamme, Anne-Mieke]
[van Laethem, Kristel]
[Wensing, Annemarie]
Lengauer, Thomas
[Incardona, Francesca]
Prediction of Response to Antiretroviral Therapy by Human Experts and by the EuResist Data-Driven Expert System (the EVE Study)
In: HIV Medicine [Early View], 1-8
Electronic Journal Article
1
Hide details for Haring, Michel A.Haring, Michel A.
2006[Tameling, Wladimir I.]
[Vossen, Jack H.]
Albrecht, Mario
Lengauer, Thomas
[Berden, Jan A.]
[Haring, Michel A.]
[Cornelissen, Ben J.C.]
Takken, Frank L. W.
Mutations in the NB-ARC domain of I-2 that impair ATP hydrolysis cause autoactivation
In: Plant Physiology [140], 1233-1245
Journal Article
7
Hide details for Harrigan, P RichardHarrigan, P Richard
2011[Swenson, Luke C]
[Mo, Theresa]
[Dong, Winnie WY]
[Zhong, Xiaoyin]
[Woods, Conan K]
Thielen, Alexander
[Jensen, Mark A]
[Knapp, David JHF]
[Chapman, Douglass]
[Lewis, Marilyn]
[James, Ian]
[Heera, Jayvant]
[Valdez, Hernan]
[Harrigan, P Richard]
Deep V3 sequencing for HIV type 1 tropism in treatment-naive patients: a reanalysis of the MERIT trial of maraviroc.
In: Clinical Infectious Diseases [53], 732-742
Journal Article
2011Thielen, Alexander
Lengauer, Thomas
[Swenson, Luke C]
[Dong, Winnie W.Y.]
[McGovern, Rachel A]
[Lewis, Marilyn]
[James, Ian]
[Heera, Jayvant]
[Valdez, Hernan]
[Harrigan, P Richard]
Mutations in gp41 are correlated with coreceptor tropism but do not improve prediction methods substantially
In: Antiviral Therapy [16], 319-328
Journal Article
2010Thielen, Alexander
Lengauer, Thomas
[Harrigan, P Richard]
[Swenson, Luke]
[Dong, Winnie WY]
[McGovern, Rachel A]
[Lewis, Marilyn]
[James, Ian]
[Heera, Jayvant]
[Valdez, Hernan]
Mutations within GP41 are correlated with coreceptor tropism but do not substantially improve coreceptor usage prediction
In: Reviews in Antiviral Therapy & Infectious Diseases, 47-47
Poster
2010[McGovern, Rachel A]
Thielen, Alexander
[Mo, Theresa]
[Dong, Winnie]
[Woods, Conan K]
[Chapman, Douglass]
[Lewis, Marilyn]
[James, Ian]
[Heera, Jayvant]
[Valdez, Hernan]
[Harrigan, P Richard]
Population-based V3 genotypic tropism assay: a retrospective analysis using screening samples from the A4001029 and MOTIVATE studies
In: AIDS [24], 2517-2525
Journal Article
2009[Harrigan, P Richard]
[McGovern, Rachel]
[Dong, Winnie]
Thielen, Alexander
[Jensen, Mark]
[Mo, Theresa]
[Chapman, Douglas]
[Lewis, Marilyn]
[James, Ian]
[Valdez, Hernan]
Screening for HIV tropism using population-based V3 genotypic analysis: a retrospective outcome analysis using stored plasma screening samples from MOTIVATE-1
In: Abstracts presented at the XVIII International HIV Drug Resistance Workshop : Basic Principles & Clinical Implications, A17-A17
Poster
2008[Moores, Andrew]
Thielen, Alexander
[Dong, Winnie]
Low, Andrew J.
[Woods, Conan]
[Jensen, Mark]
[Wynhoven, Brian]
[Chan, Dennison]
[Glascock, Christopher]
[Harrigan, P Richard]
Improved detection of X4 virus by V3 genotyping: application to plasma RNA and proviral DNA
In: Antiviral Therapy, A99
Poster
2008Thielen, Alexander
[Harrigan, P Richard]
Low, Andrew J.
[Moores, A]
Altmann, Andre
Bozek, Kasia
[Heger, Eva]
[Sichtig, Nadine]
[Kaiser, Rolf]
Lengauer, Thomas
Improved genotypic prediction of HIV-1 coreceptor usage by incorporating V2 loop sequence variation
In: Antiviral Therapy, A100
Poster
8
Hide details for Harrigan, P. RichardHarrigan, P. Richard
2011[Swenson, Luke C.]
[Mo, Theresa]
[Dong, Winnie W. Y.]
[Zhong, Xiaoyin]
[Woods, Conan K.]
[Jensen, Mark A.]
Thielen, Alexander
[Chapman, Douglass]
[Lewis, Marilyn]
[James, Ian]
[Heera, Jayvant]
[Valdez, Hernan]
[Harrigan, P. Richard]
Deep Sequencing to Infer HIV-1 Co-Receptor Usage: Application to Three Clinical Trials of Maraviroc in Treatment-Experienced Patients
In: The Journal of Infectious Diseases [203], 237-245
Journal Article
2010[Swenson, Luke C.]
[Boehme‌, Richard]
Thielen, Alexander
[McGovern‌, Rachel A.]
[Harrigan, P. Richard]
Genotypic determination of HIV-1 tropism in the clinical setting
In: HIV Therapy [4], 293-303
Journal Article
2010[Swenson, Luke C.]
[Moores, Andrew]
[Low, Andrew J.]
Thielen, Alexander
[Dong, Winnie]
[Woods, Conan]
[Jensen, Mark A.]
[Wynhoven, Brian]
[Chan, Dennison]
[Glascock, Christopher]
[Harrigan, P. Richard]
Improved detection of CXCR4-using HIV by V3 genotyping: application of population-based and "deep" sequencing to plasma RNA and proviral DNA
In: Journal of Acquired Immune Deficiency Syndromes [54], 506-510
Journal Article
2010Thielen, Alexander
[Sichtig, Nadine]
[Kaiser, Rolf]
[Lam, Jeffrey]
[Harrigan, P. Richard]
Lengauer, Thomas
Improved prediction of HIV-1 coreceptor usage with sequence information from the second hypervariable loop of gp120
In: Journal of Infectious Diseases [202], 1435-1443
Journal Article
2007[Low, Andrew J.]
[Dong, Winnie]
[Chan, Dennison]
Sing, Tobias
[Swanstrom, Ronald]
[Jensen, Mark]
[Pillai, Satish]
[Good, Benjamin]
[Harrigan, P. Richard]
Current V3 genotyping algorithms are inadequate for predicting X4 co-receptor usage in clinical isolates
In: AIDS [21], F19-F26
Journal Article
2007[Skrabal, Katharina]
[Low, Andrew J.]
[Dong, Winnie]
Sing, Tobias
[Cheung, Peter K.]
[Mammano, Fabrizio]
[Harrigan, P. Richard]
Attachment IconDetermining human immunodeficiency virus coreceptor use in a clinical setting: Degree of correlation between two phenotypic assays and a bioinformatic model
In: Journal of Clinical Microbiology [45], 279-284
Journal Article
2007Sing, Tobias
Low, Andrew J.
Beerenwinkel, Niko
Sander, Oliver
[Cheung, Peter K.]
Domingues, Francisco S.
Büch, Joachim
[Däumer, Martin]
[Kaiser, Rolf]
Lengauer, Thomas
[Harrigan, P. Richard]
Predicting HIV coreceptor usage on the basis of genetic and clinical covariates
In: Antiviral Therapy [12], 1097-1106
Journal Article
2007Sander, Oliver
Sing, Tobias
Sommer, Ingolf
[Low, Andrew J.]
[Cheung, Peter K.]
[Harrigan, P. Richard]
Lengauer, Thomas
Domingues, Francisco S.
Attachment IconStructural Descriptors of gp120 V3 Loop for the Prediction of HIV-1 Coreceptor Usage
In: PLoS Computational Biology [3], 555-564
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1
Hide details for Harrigan, R.Harrigan, R.
2011[Zazzi, M.]
[Kaiser, R.]
[Sönnerborg, A.]
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Altmann, Andre
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Lengauer, Thomas
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Prediction of Response to Antiretroviral Therapy by Human Experts and by the EuResist Data-Driven Expert System (the EVE study)
In: HIV Medicine [12], 211-218
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Hide details for Harrington, Eoghan D.Harrington, Eoghan D.
2009[Frishman, Dmitrij]
Albrecht, Mario
Blankenburg, Hagen
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[Harrington, Eoghan D.]
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Lengauer, Thomas
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Protein-protein interactions: analysis and prediction
In: Modern Genome Annotation - The Biosapiens Network, 353-410
Part of a Book
1
Hide details for Harris, R. AlanHarris, R. Alan
2010[Harris, R. Alan]
[Wang, Ting]
[Coarfa, Cristian]
[Nagarajan, Raman P.]
[Hong, Chibo]
[Downey, Sara L.]
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Bock, Christoph
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[Costello, Joseph F.]
Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications
In: Nature Biotechnology [28], 1097-1105
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Hide details for Harrow, JHarrow, J
2013[Steijger, T]
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Assessment of transcript reconstruction methods for RNA-seq
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Hide details for Harrow, JenniferHarrow, Jennifer
2007[Tress, Michael L.]
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Attachment IconThe implications of alternative splicing in the ENCODE protein complement
In: Proceedings of the National Academy of Sciences [104], 5495-5500
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Hide details for Hartl, Ulrich F.Hartl, Ulrich F.
2006[Boeddrich, Annett]
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Albrecht, Mario
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An arginine/lysine-rich motif is crucial for VCP/p97-mediated modulation of ataxin-3 fibrillogenesis
In: EMBO Journal [25], 1547-1558
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Hide details for Hartmann, ChristianHartmann, Christian
2005Rahnenführer, Jörg
Beerenwinkel, Niko
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Estimating cancer survival and clinical outcome based on genetic tumor progression scores
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Attachment IconPatients with high grade gliomas harboring delections of chromosomes 9p and 10q benefit from temozolomide treatment
In: Neoplasia [7], 883-893
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Hide details for Hartmann, ChristophHartmann, Christoph
2012[Welsch, Christoph]
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Lengauer, Thomas
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Peptidomimetic Escape Mechanisms Arise via Genetic Diversity in the Ligand-Binding Site of the Hepatitis C Virus NS3/4A Serine Protease
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Docking and scoring with alternative side-chain conformations
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Attachment IconMolecular basis of telaprevir resistance due to V36 and T54 mutations in the NS3-4A protease of HCV
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Lengauer, Thomas
Attachment IconIRECS: A new algorithm for the selection of most probable ensembles of side-chain conformations in protein models.
In: Protein Science [16], 1294-1307
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Hide details for Hartmann, RolfHartmann, Rolf
2003Antes, Iris
Lengauer, Thomas
Mueller, Ursula
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Docking into the homology models of CYP11B1 and CYP11B2
In: Proceedings of the German Conference on Bioinformatics 2003, 13
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Hide details for Hartmann, Rolf W.Hartmann, Rolf W.
2008[Lucas, Simon]
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Antes, Iris
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Novel Aldosterone Synthase Inhibitors with Extended Carbocyclic Skeleton by a Combined Ligand-Based and Structure-Based Drug Design Approach
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Synthesis and evaluation of heteroaryl substituted dihydronaphthalenes and indenes: potent and selective inhibitors of aldosterone synthase (CYP11B2) for the treatment of congestive heart failure and myocardial fibrosis
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Synthesis and Evaluation of Imidazolylmethylenetetrahydronaphthalenes and Imidazolylmethyleneindanes: Potent Inhibitors of Aldosterone Synthase
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Synthesis and Evaluation of Pyridylmethylene-tetrahydronaphthalenes and -indanes: Potent and Selective Inhibitors of Aldosterone Synthase (CYP11B2)
In: Journal of Medicinal Chemistry [48], 4489-4490
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Hide details for Hartmann, R. W.Hartmann, R. W.
2011[Welker, M.-W.]
Welsch, Christoph
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Comparison of Envelope 2 CD81 binding regions in PBMC-derived versus serum-derived hepatitis C virus isolates: higher conservation of CD81 region 2 in PBMC isolates
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Heteroaryl-substituted naphthalenes and structurally modified derivatives: selective inhibitors of CYP11B2 for the treatment of congestive heart failure and myocardial fibrosis
In: Journal of Medicinal Chemistry [48], 6632-6642
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Hide details for Hattori, HiroakiHattori, Hiroaki
2002[Nishida, Yoshiharu]
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Roomp, Kirsten
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Expression and Functional Analyses of Novel Mutations ot ATP-Binding Cassette Transporter-1 in Japanese Patients with High-Density Lipoprotein Deficiency
In: Biochemical and Biophysical Research Communications [290], 713-721
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Hide details for Hattori, MasahiroHattori, Masahiro
2010Saigo, Hiroto
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Reaction graph kernels predict EC numbers of unknown enzymatic reactions in plant secondary metabolism
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Electronic Journal Article
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Hide details for Hauck, K.Hauck, K.
2013Beggel, Bastian
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Lengauer, Thomas
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Full genome ultra-deep pyrosequencing associates G-to-A-hypermutation of the hepatitis B virus genome with the natural progression of hepatitis B
In: Journal of Viral Hepatitis [12], 882-889
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Hide details for Hauschild, Anne-ChristinHauschild, Anne-Christin
2014[Smolinska, Agnieszka]
Hauschild, Anne-Christin
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[Dallinga, Jan]
Baumbach, Jan
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Current breathomics – A review on data pre-processing techniques and machine learning in metabolomics breath analysisUnpublished/Draft
2014[Maurer, Felix]
Hauschild, Anne-Christin
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Baumbach, Jan
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MIMA - A software for analyte identification in MCC/IMS chromatograms by mapping accompanying GC/MS measurements
In: International Journal for Ion Mobility Spectrometry [?], ?
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Baumbach, Jan
Hauschild, Anne-Christin
On the importance of statistics in breath analysis - Hope or curse?Unpublished/Draft
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Hauschild, Anne-Christin
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Baumbach, Jan
An Integrative Clinical Database and Diagnostics Platform for Biomarker Identification and Analysis in Ion Mobility Spectra of Human Exhaled Air
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Baumbach, Jan
Attachment IconPaving the Way for Automated Clinical Breath Analysis and Biomarker DetectionMiscellaneous
2013Hauschild, Anne-Christin
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Baumbach, Jan
Peak Detection Method Evaluation for Ion Mobility Spectrometry by using Machine Learning Approaches
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Baumbach, Jan
Attachment IconComputational Methods for Metabolomic Data Analysis of Ion Mobility Spectrometry Data - Reviewing the State of the Art
In: Metabolites [2], 733-755
Electronic Journal Article
2012Hauschild, Anne-Christin
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Baumbach, Jan
Attachment IconIntegrated statistical learning of metabolic ion mobility spectrometry profiles for pulmonary disease identification
In: Genetics and Molecular Research [11], 2733-2744
Electronic Journal Article
2011Hauschild, Anne-ChristinModeling HIV Neutralization
Universität des Saarlandes
Thesis - Masters thesis
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Hide details for Haussler, DavidHaussler, David
2010[Harris, R. Alan]
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[Nagarajan, Raman P.]
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Bock, Christoph
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[Costello, Joseph F.]
Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications
In: Nature Biotechnology [28], 1097-1105
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Hide details for Hawkins, R. DavidHawkins, R. David
2010[Harris, R. Alan]
[Wang, Ting]
[Coarfa, Cristian]
[Nagarajan, Raman P.]
[Hong, Chibo]
[Downey, Sara L.]
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Bock, Christoph
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Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications
In: Nature Biotechnology [28], 1097-1105
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Hide details for Hayden, Michael R.Hayden, Michael R.
2002[Zwarts, K.Y.]
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Roomp, Kirsten
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ABCA1 regulatory variants influence coronary artery disease independent of effects on plasma lipid levels
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Expression and Functional Analyses of Novel Mutations ot ATP-Binding Cassette Transporter-1 in Japanese Patients with High-Density Lipoprotein Deficiency
In: Biochemical and Biophysical Research Communications [290], 713-721
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Truncation mutations in ABCA1 suppress normal upregulation of full-length ABCA1 by 9-cis-retinoic acid and 22-R-hydroxycholesterol
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Mutations in the ABC1 gene in familial HDL deficiency with defective cholesterol efflux
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Hide details for Hecht, MaximilianHecht, Maximilian
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[Venner, Eric]
[Lichtarge, Olivier]
[Rentzsch, Robert]
[Yang, Haixuan]
[Romero, Alfonso E]
[Bhat, Prajwal]
[Paccanaro, Alberto]
[Hamp, Tobias]
[Ka\ss ner, Rebecca]
[Seemayer, Stefan]
[Vicedo, Esmeralda]
[Schaefer, Christian]
[Achten, Dominik]
[Auer, Florian]
[Boehm, Ariane]
[Braun, Tatjana]
[Hecht, Maximilian]
[Heron, Mark]
[H\"{o}nigschmid, Peter]
[Hopf, Thomas A]
[Kaufmann, Stefanie]
[Kiening, Michael]
[Krompass, Denis]
[Landerer, Cedric]
[Mahlich, Yannick]
[Roos, Manfred]
[Bj\"{o}rne, Jari]
[Salakoski, Tapio]
[Wong, Andrew]
[Shatkay, Hagit]
Gatzmann, Fanny
Sommer, Ingolf
[Wass, Mark N]
[Sternberg, Michael J E]
[Skunca, Nives]
[Supek, Fran]
[Bo\v{s}njak, Matko]
[Panov, Pan\v{c}e]
[D\v{z}eroski, Sa\v{s}o]
[Smuc, Tomislav]
[Kourmpetis, Yiannis A I]
[van Dijk, Aalt D J]
[Braak, Cajo J F Ter]
[Zhou, Yuanpeng]
[Gong, Qingtian]
[Dong, Xinran]
[Tian, Weidong]
[Falda, Marco]
[Fontana, Paolo]
[Lavezzo, Enrico]
[{Di Camillo}, Barbara]
[Toppo, Stefano]
[Lan, Liang]
[Djuric, Nemanja]
[Guo, Yuhong]
[Vucetic, Slobodan]
[Bairoch, Amos]
[Linial, Michal]
[Babbitt, Patricia C]
[Brenner, Steven E]
[Orengo, Christine]
[Rost, Burkhard]
[Mooney, Sean D]
[Friedberg, Iddo]
A large-scale evaluation of computational protein function prediction
In: Nature Methods [10], 221-227
Journal Article
1
Hide details for Heckmann-Pohl, Dorothee M.Heckmann-Pohl, Dorothee M.
2006[Heckmann-Pohl, Dorothee M.]
[Bastian, Sabine]
[Altmeier, S.]
Antes, Iris
Improvement of the fungal enzyme pyranose 2-oxidase using protein engineering
In: Journal of Biotechnology [124], 26-40
Journal Article
5
Hide details for Heera, JayvantHeera, Jayvant
2011[Swenson, Luke C.]
[Mo, Theresa]
[Dong, Winnie W. Y.]
[Zhong, Xiaoyin]
[Woods, Conan K.]
[Jensen, Mark A.]
Thielen, Alexander
[Chapman, Douglass]
[Lewis, Marilyn]
[James, Ian]
[Heera, Jayvant]
[Valdez, Hernan]
[Harrigan, P. Richard]
Deep Sequencing to Infer HIV-1 Co-Receptor Usage: Application to Three Clinical Trials of Maraviroc in Treatment-Experienced Patients
In: The Journal of Infectious Diseases [203], 237-245
Journal Article
2011[Swenson, Luke C]
[Mo, Theresa]
[Dong, Winnie WY]
[Zhong, Xiaoyin]
[Woods, Conan K]
Thielen, Alexander
[Jensen, Mark A]
[Knapp, David JHF]
[Chapman, Douglass]
[Lewis, Marilyn]
[James, Ian]
[Heera, Jayvant]
[Valdez, Hernan]
[Harrigan, P Richard]
Deep V3 sequencing for HIV type 1 tropism in treatment-naive patients: a reanalysis of the MERIT trial of maraviroc.
In: Clinical Infectious Diseases [53], 732-742
Journal Article
2011Thielen, Alexander
Lengauer, Thomas
[Swenson, Luke C]
[Dong, Winnie W.Y.]
[McGovern, Rachel A]
[Lewis, Marilyn]
[James, Ian]
[Heera, Jayvant]
[Valdez, Hernan]
[Harrigan, P Richard]
Mutations in gp41 are correlated with coreceptor tropism but do not improve prediction methods substantially
In: Antiviral Therapy [16], 319-328
Journal Article
2010Thielen, Alexander
Lengauer, Thomas
[Harrigan, P Richard]
[Swenson, Luke]
[Dong, Winnie WY]
[McGovern, Rachel A]
[Lewis, Marilyn]
[James, Ian]
[Heera, Jayvant]
[Valdez, Hernan]
Mutations within GP41 are correlated with coreceptor tropism but do not substantially improve coreceptor usage prediction
In: Reviews in Antiviral Therapy & Infectious Diseases, 47-47
Poster
2010[McGovern, Rachel A]
Thielen, Alexander
[Mo, Theresa]
[Dong, Winnie]
[Woods, Conan K]
[Chapman, Douglass]
[Lewis, Marilyn]
[James, Ian]
[Heera, Jayvant]
[Valdez, Hernan]
[Harrigan, P Richard]
Population-based V3 genotypic tropism assay: a retrospective analysis using screening samples from the A4001029 and MOTIVATE studies
In: AIDS [24], 2517-2525
Journal Article
4
Hide details for Heger, EvaHeger, Eva
2012[Heger, Eva]
[Thielen, Alexander]
[Gilles, Ramona]
[Obermeier, Martin]
Lengauer, Thomas
[Kaiser, Rolf]
[Trapp, Susanna]
APOBEC3G/F a one possible driving source for co-receptor switch of the human immunodeficiency virus-1
In: Medical Microbiology and Immunology [201], 7-16
Journal Article
2011[Heger, Eva]
Thielen, Alexander
[Gilles, Ramona]
[Obermeier, Martin]
Lengauer, Thomas
[Kaiser, Rolf]
[Trapp, Susanna]
APOBEC3G/F as one possible driving force for co-receptor switch of the human immunodeficiency virus-1
In: Medical Microbiology and Immunology [201], 7-16
Journal Article
2011[Sierra, Saleta]
[Kaiser, Rolf]
[Lübke, Nadine]
Thielen, Alexander
[Schuelter, Eugen]
[Heger, Eva]
[Däumer, Martin]
[Reuter, Stefan]
[Esser, Stefan]
[Fätkenheuer, Gerd]
[Pfister, Herbert]
[Oette, Mark]
Lengauer, Thomas
Prediction of HIV-1 coreceptor usage (tropism) by sequence analysis using a genotypic approach
In: Journal of Visualized Experiments [58], e3264,1-e3264,9
Electronic Journal Article
2008Thielen, Alexander
[Harrigan, P Richard]
Low, Andrew J.
[Moores, A]
Altmann, Andre
Bozek, Kasia
[Heger, Eva]
[Sichtig, Nadine]
[Kaiser, Rolf]
Lengauer, Thomas
Improved genotypic prediction of HIV-1 coreceptor usage by incorporating V2 loop sequence variation
In: Antiviral Therapy, A100
Poster
1
Hide details for Hegyi, HediHegyi, Hedi
2007[Tress, Michael L.]
[Martelli, Pier L.]
[Frankish, Adam]
[Reeves, Gabrielle A.]
[Wesselink, Jan J.]
[Yeats, Corin]
[Ólason, Páll Í.]
Albrecht, Mario
[Hegyi, Hedi]
[Giorgetti, Alejandro]
[Raimondo, Domenico]
[Lagarde, Julien]
[Laskowski, Roman A.]
[López, Gonzalo]
[Sadowski, Michael I.]
[Watson, James D.]
[Fariselli, Piero]
[Rossi, Ivan]
[Nagy, Alinda]
[Kai, Wang]
[Størling, Zenia]
[Orsini, Massimiliano]
Assenov, Yassen
Blankenburg, Hagen
Huthmacher, Carola
Ramírez, Fidel
Schlicker, Andreas
[Denoued, France]
[Jones, Phil]
[Kerrien, Samuel]
[Orchard, Sandra]
[Antonarakis, Stylianos E.]
[Reymond, Alexandre]
[Birney, Ewan]
[Brunak, Søren]
[Casadio, Rita]
[Guigo, Roderic]
[Harrow, Jennifer]
[Hermjakob, Henning]
[Jones, David T.]
Lengauer, Thomas
[Orengo, Christine A.]
[Patthy, László]
[Thornton, Janet M.]
[Tramontano, Anna]
[Valencia, Alfonso]
Attachment IconThe implications of alternative splicing in the ENCODE protein complement
In: Proceedings of the National Academy of Sciences [104], 5495-5500
Journal Article
3
Hide details for Heidari, Shirin (ed.)Heidari, Shirin (ed.)
2012[Schuelter, Eugen]
[Lübcke, Nadine]
[Jensen, Björn]
[Zazzi, Maurizio]
[Sönnerborg, Anders]
Lengauer, Thomas
[Incardona, Francesca]
[Camacho, Richardo]
[Schmit, J]
[Clotet, Bonaventura]
[Kaiser, Rolf]
Pironti, Alejandro
Etravirine in protease inhibitor-free antiretroviral combination therapies
In: Journal of the International AIDS Society, 155-156
Poster
2012[Obermeier, Martin]
[Camacho, Ricardo]
[Charpentier, Charlotte]
[Deschamps, Diane]
[Eberle, Joseph]
[Gürtler, Lutz]
[Ruelle, Jean]
Pironti, Alejandro
[Brun-Veziet, Francoise]
[Stürmer, Martin]
[Kaiser, Rolf]
HIV2EU: supporting standardized HIV-2 drug resistance interpretation in Europe
In: Journal of the International AIDS Society, 135
Poster
2012[Sierra, Saleta]
[Dzbowski, Jan Nikolaj]
Pironti, Alejandro
[Gueney, L]
Thielen, Alexander
[Reuter, Stefan]
[Esser, Stefan]
[Fätkenheuer, Gerd]
Lengauer, Thomas
[Hider, Dominik]
[Hoffmann, Daniel]
[Pfister, Holger]
[Jensen, Björn]
[Kaiser, Rolf]
Optimisation of baseline genotypic testing for safe and efficient maraviroc administration
In: Journal of the International AIDS Society, 101-102
Poster
1
Hide details for Heidtke, K.Heidtke, K.
2004[Crass, T.]
Antes, Iris
[Basekow, R.]
[Bork, P.]
Buning, Christian
[Christensen, M.]
[Claußen, H.]
[Ebeling, C.]
[Ernst,P.]
[Gailus-Durner, V.]
[Glatting, K.-H.]
[Gohla, R.]
[Gößling, F.]
[Grote, K.]
[Heidtke, K.]
[Herrmann, A.]
[O Keefe, S.]
[Kießlich, O.]
[Kolibal, S.]
[Korbel, J.O.]
Lengauer, Thomas
[Liebich, I.]
[van der Linden, M.]
[Luz, H.]
[Meissner, K.]
[von Mering, C.]
[Mevissen, T.]
[Mewes, H.-W.]
[Michael, H.]
[Mokrejs, M.]
[Müller, T.]
[Pospisil, H.]
[Rarey, Matthias]
[Reich, J.G.]
[Schneider, R.]
[Schomburg, D.]
[Schulze-Kremer, S.]
[Schwarzer, K.]
Sommer, Ingolf
[Springstubbe, S.]
[Suhai, S.]
[Thoppae, G.]
[Vingron, M.]
[Warfsmann, J.]
[Werner, T.]
[Wetzler, D.]
[Wingender, E.]
[Zimmer, Ralf]
The Helmholtz Network for Bioinformatics: an integrative web portal for bioinformatics resources
In: Bioinformatics [20], 268-270
Journal Article
1
Hide details for Heil, BurkhardHeil, Burkhard
2006[Heil, Burkhard]
[Ludwig, Jost]
[Lichtenberg-Fraté, Hella]
Lengauer, Thomas
Computational recognition of potassium channel sequences
In: Bioinformatics [13], 1562-1568
Journal Article
1
Hide details for Heim, RalphHeim, Ralph
2008[Lucas, Simon]
[Heim, Ralph]
[Negri, Matthias]
Antes, Iris
[Ries, Christina]
[Schewe, Katarzyna E.]
[Bisi, Alessandra]
[Gobbi, Silvia]
[Hartmann, Rolf W.]
Novel Aldosterone Synthase Inhibitors with Extended Carbocyclic Skeleton by a Combined Ligand-Based and Structure-Based Drug Design Approach
In: Journal of Medical Chemistry [51], 6138-6149
Journal Article
1
Hide details for Heine, MarkusHeine, Markus
2009Bozek, Kasia
[Relógio, Angela]
[Kielbasa, Szymon M.]
[Heine, Markus]
[Dame, Christof]
[Kramer, Achim]
[Herzel, Hanspeter]
Regulation of clock-controlled genes in mammals.
In: PLoS One [4], e4882:1-e4882:12
Electronic Journal Article
8
Hide details for Heinzle, ElmarHeinzle, Elmar
2006Talwar, Priti
Lengauer, Thomas
[Wittmann, Christoph]
[Velagapudi, V. R.]
[Heinzle, Elmar]
Development of Computational Methods for Analysis of Metabolic Profiling Data
In: Proceedings of International Conference on Systems Biology (ICSB 2006), Japan, 42-42
Proceedings Article
2006[Velagapudi, Vidya R.]
[Wittmann, Christoph]
Lengauer, Thomas
Talwar, Priti
[Heinzle, Elmar]
Metabolic high- content screening of Saccharomyces cerevisiae reveals superior performance of single gene deletion strains
In: Process Biochemistry [41], 2170-2179
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2005Talwar, Priti
Lengauer, Thomas
Rahnenführer, Jörg
[Wittmann, Christoph]
[Velagapudi, VR]
[Heinzle, Elmar]
Computational Methods for Protein Function Prediction using Metabolomics Data
In: Proceedings of International Workshop on Systems Biology 2005, 1
Poster
2005Talwar, Priti
Lengauer, Thomas
Rahnenführer, Jörg
[Heinzle, Elmar]
[Velagapudi, VR]
[Wittmann, Christoph]
Towards computational analysis of metabolic profiling data for protein function prediction.
In: Proceedings of the Yeast Systems Biology, 6th International Conference on Systems Biology (ICSB 2005), 1
Poster
2004Talwar, Priti
Lengauer, Thomas
Rahnenführer, Jörg
[Velagapudi, VR]
[Wittmann, Christoph]
[Heinzle, Elmar]
Computational Methods For Metabolite Screening
In: Proceedings of the 12th International Conference on Intelligent Systems for Molecular Biology + 3rd European Conference on Computational Biology (ISMB/ECCB 2004), 1
Poster
2004Talwar, Priti
Lengauer, Thomas
Rahnenführer, Jörg
[Velagapudi, VR]
[Wittmann, Christoph]
[Heinzle, Elmar]
Computational Methods For Metabolite Screening
In: Proceedings of the 5th International Conference on Systems Biology (ICSB 2004), 1
Poster
2003Talwar, Priti
[Wittmann, Christoph]
Lengauer, Thomas
[Heinzle, Elmar]
Software tool for automated processing of 13C labeling data from mass spectrometry data
In: BioTechniques [35], 1214-1215
Journal Article
2003Talwar, Priti
Lengauer, Thomas
[Wittmann, Christoph]
[Mangadu, Vidya]
[Heinzle, Elmar]
Towards cellular function through metabolite screening
In: Proceedings of the 3rd Annual Conference on Metabolic Profiling: Pathways in Discovery, 7
Proceedings Article
1
Hide details for Heinzl, Armin (ed.)Heinzl, Armin (ed.)
2006Bock, Christoph
Halachev, Konstantin
Lengauer, Thomas
Bioinformatisches Data Mining erschließt neue Strategien gegen Krebs
In: Aktuelle Trends in der Softwareforschung, 91-99
Part of a Book
2
Hide details for Hein, JotunHein, Jotun
2011Feuerbach, Lars
[Lyngso, Rune B.]
Lengauer, Thomas
[Hein, Jotun]
Reconstructing the ancestral germline methylation state of young repeats
In: Molecular Biology and Evolution [28], 1777-1784
Journal Article
2010Feuerbach, Lars
Lyngsoe, Rune
Lengauer, Thomas
[Hein, Jotun]
Comparative Epigenomiocs - Towards Ancestral Germline Methylome Reconstruction
In: Abstracts of papers presented at the 2010 meeting on The Biology of genomes, 87
Poster
1
Hide details for Helin, KristianHelin, Kristian
2012[Adams, David]
[Altucci, Lucia]
[Antonarakis, Stylianos E]
[Ballesteros, Juan]
[Beck, Stephan]
[Bird, Adrian]
Bock, Christoph
[Boehm, Bernhard]
[Campo, Elias]
[Caricasole, Andrea]
[Dahl, Fredrik]
[Dermitzakis, Emmanouil T]
[Enver, Tariq]
[Esteller, Manel]
[Estivill, Xavier]
[Ferguson-Smith, Anne]
[Fitzgibbon, Jude]
[Flicek, Paul]
[Giehl, Claudia]
[Graf, Thomas]
[Grosveld, Frank]
[Guigó, Roderic]
[Gut, Ivo]
[Helin, Kristian]
[Jarvius, Jonas]
[Küppers, Ralf]
[Lehrach, Hans]
Lengauer, Thomas
[Lernmark, Åke]
[Leslie, David]
[Loeffler, Markus]
[Macintyre, Elizabeth]
[Mai, Antonello]
[Martens, Joost H A]
[Minucci, Saverio]
[Ouwehand, Willem H]
[Pelicci, Pier Giuseppe]
[Pendeville, Hèléne]
[Porse, Bo]
[Rakyan, Vardhman]
[Reik, Wolf]
[Schrappe, Martin]
[Schübeler, Dirk]
[Seifert, Martin]
[Siebert, Reiner]
[Simmons, David]
[Soranzo, Nicole]
[Spicuglia, Salvatore]
[Stratton, Michael]
[Stunnenberg, Hendrik G]
[Tanay, Amos]
[Torrents, David]
[Valencia, Alfonso]
[Vellenga, Edo]
[Vingron, Martin]
[Walter, Jörn]
[Willcocks, Spike]
BLUEPRINT to decode the epigenetic signature written in blood
In: Nature Biotechnology [30], 224-226
Journal Article
1
Hide details for Hellmich, MartinHellmich, Martin
2009[Sos, Martin L.]
[Michel, Kathrin]
[Zander, Thomas]
[Weiss, Jonathan]
[Frommolt, Peter]
[Pfeifer, Martin]
[Li, Danan]
[Ullrich, Roland]
[Koker, Mirjam]
[Fischer, Florian]
[Shimamura, Takeshi]
[Rauh, Daniel]
[Mermel, Craig]
[Fischer, Stefanie]
[Stückrath, Isabel]
[Heynck, Stefanie]
[Beroukhim, Rameen]
[Lin, William]
[Winckler, Wendy]
[Shah, Kinjal]
[LaFramboise, Thomas]
[Moriarty, Whei F.]
Hanna, megan
Tolosi, Laura
[Rahnenführer, Jörg]
[Verhaak, Roel]
[Chiang, Derek]
[Getz, Gad]
[Hellmich, Martin]
[Wolf, Jürgen]
[Girard, Luc]
[Peyton, Michael]
[Weir, Barbara A.]
[Chen, Tzu-Hsiu]
[Greulich, Heidi]
[Barretina, Jordi]
[Shapiro, Geoffrey I.]
[Garraway, Levi A.]
[Gazdar, Adi F.]
[Minna, John D.]
[Meyerson, Matthew]
[Wong, Kwok-Kin]
[Thomas, Roman K.]
Predicting drug susceptibility of non-small cell lung cancers based on genetic lesions
In: Journal of Clinical Investigation [119], 1727-1740
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1
Hide details for Helms, VolkhardHelms, Volkhard
2005[Gu, Wei]
[Kofler, Michael]
Antes, Iris
[Freund, Christian]
[Helms, Volkhard]
Alternative Binding Modes of Polyproline Peptides Binding to the GYF Domain
In: Biochemistry [44], 6404-6415
Journal Article
1
Hide details for Hemmingsen, LarsHemmingsen, Lars
2003[Olsen, Lars]
[Antony, Jens]
[Ryde, Ulf]
Adolph, Hans-Werner
[Hemmingsen, Lars]
Lactam hydrolysis catalyzed by mononuclear metallo-beta-lactamases: a density functional study
In: Journal of Physical Chemistry / B [107], 2366-2375
Journal Article
2
Hide details for Henn, WolframHenn, Wolfram
2007[Ketter, Ralf]
[Urbschat, Steffi]
[Henn, Wolfram]
[Feiden, Wolfgang]
Beerenwinkel, Niko
Lengauer, Thomas
[Steudel, Wolf-Ingo]
[Zang, Klaus D.]
Rahnenführer, Jörg
Application of oncogenetic trees mixtures as a biostatistical model of the clonal cytogenetic evolution of meningiomas
In: International Journal of Cancer [121], 1473-1480
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2007[Ketter, Ralf]
[Kim, Yoo-Jin]
[Storck, Simone]
Rahnenführer, Jörg
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[Steudel, Wolf-Ingo]
[Zang, Klaus D.]
[Henn, Wolfram]
Attachment IconHyperdiploidy defines a distinct cytogenetic entity of meningiomas
In: Journal of Neuro-Oncology [83], 213-221
Journal Article
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Hide details for Hermjakob, HenningHermjakob, Henning
2011[Aranda, Bruno]
Blankenburg, Hagen
[Kerrien, Samuel]
[Brinkman, Fiona S.]
[Ceol, Arnaud]
[Chautard, Emilie]
[Dana, Jose M.]
[De Las Rivas, Javier]
[Dumousseau, Marine]
[Galeota, Eugenia]
[Gaulton, Anna]
[Goll, Johannes]
[Hancock, Robert E. W.]
[Isserlin, Ruth]
[Jimenez, Rafael C.]
[Kerssemakers, Jules]
[Khadake, Jyoti]
[Lynn, David J.]
[Michaut, Magali]
[O'Kelly, Gavin]
[Ono, Keiichiro]
[Orchard, Sandra]
[Prieto, Carlos]
[Razick, Sabry]
[Rigina, Olga]
[Salwinski, Lukasz]
[Simonovic, Milan]
[Velankar, Sameer]
[Winter, Andrew]
[Wu, Guanming]
[Bader, Gary D.]
[Cesareni, Gianni]
[Donaldson, Ian M.]
[Eisenberg, David]
[Kleywegt, Gerard J.]
[Overington, John]
[Ricard-Blum, Sylvie]
[Tyers, Mike]
Albrecht, Mario
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PSICQUIC and PSISCORE: accessing and scoring molecular interactions
In: Nature Methods [8], 528-529
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Albrecht, Mario
Blankenburg, Hagen
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[Jensen, Lars J.]
[Juan, David A.]
Lengauer, Thomas
[Pagel, Philipp]
[Schachter, Vincent]
[Valencia, Alfonso]
Protein-protein interactions: analysis and prediction
In: Modern Genome Annotation - The Biosapiens Network, 353-410
Part of a Book
2008[Jenkinson, Andrew M.]
Albrecht, Mario
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Blankenburg, Hagen
[Down, Thomas]
[Finn, Robert D.]
[Hermjakob, Henning]
[Hubbard, Tim J. P.]
[Jimenez, Rafael C.]
[Jones, Philip]
[Kähäri, Andreas]
[Kulesha, Eugene]
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Integrating biological data - the Distributed Annotation System
In: BMC Bioinformatics [9], S3.1-7
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[Martelli, Pier L.]
[Frankish, Adam]
[Reeves, Gabrielle A.]
[Wesselink, Jan J.]
[Yeats, Corin]
[Ólason, Páll Í.]
Albrecht, Mario
[Hegyi, Hedi]
[Giorgetti, Alejandro]
[Raimondo, Domenico]
[Lagarde, Julien]
[Laskowski, Roman A.]
[López, Gonzalo]
[Sadowski, Michael I.]
[Watson, James D.]
[Fariselli, Piero]
[Rossi, Ivan]
[Nagy, Alinda]
[Kai, Wang]
[Størling, Zenia]
[Orsini, Massimiliano]
Assenov, Yassen
Blankenburg, Hagen
Huthmacher, Carola
Ramírez, Fidel
Schlicker, Andreas
[Denoued, France]
[Jones, Phil]
[Kerrien, Samuel]
[Orchard, Sandra]
[Antonarakis, Stylianos E.]
[Reymond, Alexandre]
[Birney, Ewan]
[Brunak, Søren]
[Casadio, Rita]
[Guigo, Roderic]
[Harrow, Jennifer]
[Hermjakob, Henning]
[Jones, David T.]
Lengauer, Thomas
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[Thornton, Janet M.]
[Tramontano, Anna]
[Valencia, Alfonso]
Attachment IconThe implications of alternative splicing in the ENCODE protein complement
In: Proceedings of the National Academy of Sciences [104], 5495-5500
Journal Article
1
Hide details for Herms, StefanHerms, Stefan
2013[Liu, Jimmy Z.]
[Hov, Johannes Roksund]
[Folseraas, Trine]
[Ellinghaus, Eva]
[Rushbrook, Simon M.]
Doncheva, Nadezhda T.
[Andreassen, Ole A.]
[Weersma, Rinse K.]
[Weismuller, Tobias J.]
[Eksteen, Bertus]
[Invernizzi, Pietro]
[Hirschfield, Gideon M.]
[Gotthardt, Daniel Nils]
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[Schramm, Christoph]
[Muller, Tobias]
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[Dalekos, Georgios]
[Nothen, Markus M.]
[Herms, Stefan]
[Winkelmann, Juliane]
[Mitrovic, Mitja]
[Braun, Felix]
[Ponsioen, Cyriel Y.]
[Croucher, Peter J. P.]
[Sterneck, Martina]
[Teufel, Andreas]
[Mason, Andrew L.]
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[Dorfman, Ruslan]
[Alvaro, Domenico]
[Floreani, Annarosa]
[Onengut-Gumuscu, Suna]
[Rich, Stephen S.]
[Thompson, Wesley K.]
[Schork, Andrew J.]
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Albrecht, Mario
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Dense genotyping of immune-related disease regions identifies nine new risk loci for primary sclerosing cholangitis
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Hide details for Hernández-Orallo, José (ed.)Hernández-Orallo, José (ed.)
2004Sing, Tobias
Beerenwinkel, Niko
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Learning mixtures of localized rules by maximizing the area under the ROC curve
In: ROCAI-2004: 1st International Workshop on ROC Analysis in Artificial Intelligence, 89-96
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2013[Radivojac, Predrag]
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A large-scale evaluation of computational protein function prediction
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2013Tolosi, Laura
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Halachev, Konstantin
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Lengauer, Thomas
A method for finding consensus breakpoints in the cancer genome from copy number data
In: Bioinformatics [29], 1793-1800
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2004[Crass, T.]
Antes, Iris
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Buning, Christian
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Clinical significance of in vitro replication-enhancing mutations of the hepatitis C virus (HCV) replicon in patients with chronic HCV infection
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Schelhorn, Sven-Eric
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Association of HCV-related mixed cryoglobulinemia with specific mutational patterns of the HCV E2 protein and CD81 expression on peripheral B lymphocytes
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2009Bozek, Kasia
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Regulation of clock-controlled genes in mammals.
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2010Bozek, Katarzyna
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2006Bock, Christoph
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Attachment IconAnalysis and Prediction of Helix Shift Errors in Homology Modeling
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Multiple-Ligand-Based Virtual Screening: Methods and Applications of the MTree Approach
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Predicting drug susceptibility of non-small cell lung cancers based on genetic lesions
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A Prognostic DNA Methylation Signature for Stage I Non-Small-Cell Lung Cancer
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Doncheva, Nadezhda T.
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Profiling of parkin-binding partners using tandem affinity purification
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Pironti, Alejandro
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Optimisation of baseline genotypic testing for safe and efficient maraviroc administration
In: Journal of the International AIDS Society, 101-102
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2004Proceedings Twelfth International Conference on Intelligent Systems for Molecular Biology/Third European Conference on Computional Biology 2004 (ISMB/ECCB 2004)Proceedings
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Recruitment and activation of a lipid kinase by hepatitis C virus NS5A is essential for integrity of the membranous replication compartment
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2004Proceedings Twelfth International Conference on Intelligent Systems for Molecular Biology/Third European Conference on Computional Biology 2004 (ISMB/ECCB 2004)Proceedings
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2012Dietzen, Matthias
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On the Applicability of Elastic Network Normal Modes in Small-Molecule Docking
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Schulz, Marcel Holger
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Expression and Functional Analyses of Novel Mutations ot ATP-Binding Cassette Transporter-1 in Japanese Patients with High-Density Lipoprotein Deficiency
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Truncation mutations in ABCA1 suppress normal upregulation of full-length ABCA1 by 9-cis-retinoic acid and 22-R-hydroxycholesterol
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Expression and Functional Analyses of Novel Mutations ot ATP-Binding Cassette Transporter-1 in Japanese Patients with High-Density Lipoprotein Deficiency
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Dense genotyping of immune-related disease regions identifies nine new risk loci for primary sclerosing cholangitis
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Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications
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2006Hobler, AnnaDocking of monosaccharids into the wild type and mutants of pyranose 2-oxidase
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Pironti, Alejandro
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Thielen, Alexander
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Optimisation of baseline genotypic testing for safe and efficient maraviroc administration
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Arevir: A Secure Platform for Designing Personalized Antiretroviral Therapies Against HIV
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Compensatory mutations at the HIV cleavage sites p7/p1 and p1/p6-gag in therapy-naive and therapy-experienced patients
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Characterization of novel HIV Drug Resistance Mutations using clustering, multidimensional scaling and SVM-based feature ranking
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Computational methods for the design of effective therapies against drug resistant HIV strains
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Estimating HIV evolutionary pathways and the genetic barrier to drug resistance
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Evolution of HIV resistance during treatment interruption in experienced patients and after restarting a new therapy
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Lengauer, Thomas
Geno2pheno[coreceptor]: a tool for predicting coreceptor usage from genotype and for monitoring coreceptor-associated sequence alterations
In: Proceedings of the 3rd European HIV Drug Resistance Workshop, -
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2005Beerenwinkel, Niko
Rahnenführer, Jörg
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Lengauer, Thomas
Learning multiple evolutionary pathways from cross-sectional data
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Rahnenführer, Jörg
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Mtreemix: a software package for learning and using mixture models of mutagenetic trees
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Däumer, Martin
Hoffmann, Daniel
Kaiser, Rolf
Selbig, Joachim
Lengauer, Thomas
Learning multiple evolutionary pathways from cross-sectional data
In: RECOMB 2004 : proceedings of the Eighth Annual International Conference on Research in Computational Molecular Biology, 36-44
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Lengauer, Thomas
Bioinformatikmethoden für die Optimierung antiviraler Kombinationstherapien
In: MPG Jahrbuch, 481-486
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2003Beerenwinkel, Niko
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Estimating effective drug combinations against drug-resistant mutants from genotypes
In: Proceedings of the 1st European HIV Drug Resistamce Workshop, 18-18
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Geno2pheno: estimating phenotypic drug resistance from HIV-1 genotypes
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Methods for optimizing antiviral combination therapies
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Structural modeling of ataxin-3 reveals distant homology to adaptins
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Tenofovir resistance and resensitization
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Tree models for the evolution of drug resistance
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A new method for the fast solution of protein-3D-structures, combining experiments and bioinformatics
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Diversity and complexity of HIV-1drug resistance: A bioinformatics approach to predicting phenotype from genotype
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Geno2pheno is predictive of short-term virological response
In: Proceedings from the 5th International Workshop on HIV Drug Resistance & Treatment Strategies, 74-74
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Quantitative phenotype prediction by support vector machines
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Geno2pheno: A system for the interpretation of genotypic HIV Drug resistance tests
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Neue Wege zur Optimierung von Anti-HIV Therapien
In: BIOforum [24], 912-914
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Geno2pheno: a new machine learning approach to predicting phenotypic drug resistance from genotype
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2007European Journal of Medical ResearchJournal
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Albrecht, Mario
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A new method for the fast solution of protein-3D-structures, combining experiments and bioinformatics
In: Coupling of Biological and Electronic Systems: Proceedings of the 2nd Caesarium, Bonn, 1-3 November 2000, 59-78
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2008[Hornstein, Max]
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Alexa, Adrian
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Attachment IconFactor interaction analysis for chromosome 8 and DNA methylation alterations highlights innate immune response suppression and cytoskeletal changes in prostate cancer
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2007Sing, Tobias
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Attachment IconMutagenetic tree Fisher kernel improves prediction of HIV drug resistance from viral genotype
In: Advances in Neural Information Processing Systems 19, 1-9
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2001[Apostolakis, Joannis]
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Derivation of a scoring function for crystal structure prediction
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Amino acid variations in hepatitis C virus p7 and sensitivity to antiviral combination therapy with amantadine in chronic hepatitis C
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Clinical relevance of the 2'-5'-oligoadenylate synthetase/RNase L system for treatment response in chronic hepatitis C
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Somatic hypermutation and mRNA expression levels of the BCL-6 gene in patients with hepatitis C virus-associated lymphoproliferative diseases
In: Journal of Viral Hepatitis [14], 484-491
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2011[Welker, M.-W.]
Welsch, Christoph
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Comparison of Envelope 2 CD81 binding regions in PBMC-derived versus serum-derived hepatitis C virus isolates: higher conservation of CD81 region 2 in PBMC isolates
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2010[Mihm, Ulrike]
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Welsch, Christoph
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Association of HCV-related mixed cryoglobulinemia with specific mutational patterns of the HCV E2 protein and CD81 expression on peripheral B lymphocytes
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2011Hoinka, Jan-MalteFinding the Hairpin in the Haystack: Towards an High Throughput in Silico Pipeline for Aptamer Motif Identification using SELEX Data
Universität des Saarlandes
Thesis - Masters thesis
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2003Rahnenführer, JörgStatistical Inference for Clustering Microarrays
In: Proceedings of the MSRI Workshop: Nonlinear Estimation and Classification, 323-332
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A large-scale evaluation of computational protein function prediction
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Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications
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2001Lengauer, ThomasBioinformatik an der Schwelle zur postgenomischen Ära
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2013[Radivojac, Predrag]
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[Oron, Tal Ronnen]
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[Graim, Kiley]
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[Verspoor, Karin]
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[Pandey, Gaurav]
[Yunes, Jeffrey M]
[Talwalkar, Ameet S]
[Repo, Susanna]
[Souza, Michael L]
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[Casadio, Rita]
[Wang, Zheng]
[Cheng, Jianlin]
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[Gough, Julian]
[Koskinen, Patrik]
[T\"{o}r\"{o}nen, Petri]
[Nokso-Koivisto, Jussi]
[Holm, Liisa]
[Cozzetto, Domenico]
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Gatzmann, Fanny
Sommer, Ingolf
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A large-scale evaluation of computational protein function prediction
In: Nature Methods [10], 221-227
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Hide details for Hornstein, MaxHornstein, Max
2008[Hornstein, Max]
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Alexa, Adrian
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Protein phosphatase and TRAIL receptor genes as new candidate tumor genes on chromosome 8p in prostate cancer
In: Cancer Genomics & Proteomics [5], 123-136
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Hide details for Horton, PaulHorton, Paul
2012[Rost, Burkhard]
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Lengauer, Thomas
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Paving the future: finding suitable ISMB venues
In: Bioinformatics [28], 2556-2559
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Hide details for Hovig, EivindHovig, Eivind
2007[Liu, Fang]
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Bock, Christoph
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Attachment IconThe human genomic melting map
In: PLoS Computational Biology [3], e93
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Hide details for Hovingh, KeesHovingh, Kees
2002[Wellington, Cheryl L.]
[Yang, Yu-Zhou]
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Roomp, Kirsten
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Truncation mutations in ABCA1 suppress normal upregulation of full-length ABCA1 by 9-cis-retinoic acid and 22-R-hydroxycholesterol
In: Journal of Lipid Research [43], 1939-1949
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Hide details for Hov, Johannes RoksundHov, Johannes Roksund
2013[Liu, Jimmy Z.]
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Doncheva, Nadezhda T.
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Mayr, Gabriele
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Albrecht, Mario
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Dense genotyping of immune-related disease regions identifies nine new risk loci for primary sclerosing cholangitis
In: Nature Genetics [45], 670-677
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Hide details for Ho, Joshua W. K.Ho, Joshua W. K.
2011[Zacharek, Sima J.]
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Bock, Christoph
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Lung stem cell self-renewal relies on BMI1-dependent control of expression at imprinted loci
In: Cell Stem Cell [9], 272-280
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Hide details for Huang, JianzhongHuang, Jianzhong
2011[Kumar, Vinod]
Sun, Peng
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Comparative Genomics of Klebsiella pneumoniae Strains with Different Antibiotic Resistance Profiles
In: Antimicrobial Agents and Chemotherapy [55], 4267-4276
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Hide details for Hua, DeameHua, Deame
2005[Castellano, Sergi]
[Lobanov, Alexey V.]
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Albrecht, Mario
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Lengauer, Thomas
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Diversity and functional plasticity of eukaryotic selenoproteins: Identification and characterization of the SelJ family
In: Proceedings of the National Academy of Sciences [102], 16188-16193
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Hide details for Hubbard, Tim J. P.Hubbard, Tim J. P.
2008[Jenkinson, Andrew M.]
Albrecht, Mario
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Blankenburg, Hagen
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Integrating biological data - the Distributed Annotation System
In: BMC Bioinformatics [9], S3.1-7
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Assessment of transcript reconstruction methods for RNA-seq
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Hide details for Hubner, NorbertHubner, Norbert
2007[Söderhäll, Cilla]
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Attachment IconVariants in a novel epidermal collagen gene (COL29A1) are associated with atopic dermatitis
In: PLoS Biology [5], e242.1952-1961
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Hide details for Hudson, T.J.Hudson, T.J.
2002[Zwarts, K.Y.]
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Roomp, Kirsten
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ABCA1 regulatory variants influence coronary artery disease independent of effects on plasma lipid levels
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Common genetic variation in ABCA1 is associated with altered lipoprotein levels and a modified risk for coronary artery disease
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Hide details for Hübner, AnikaHübner, Anika
2007[Mikeska, Thomas]
Bock, Christoph
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Attachment IconOptimization of Quantitative MGMT Promoter Methylation Analysis Using Pyrosequencing and Combined Bisulfite Restriction Analysis
In: Journal of Molecular Diagnostics [9], 368-381
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Hide details for Huertas, DoriHuertas, Dori
2012[Simmer, Femke]
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Assenov, Yassen
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Comparative genome-wide DNA methylation analysis of colorectal tumor and matched normal tissues
In: Epigenetics [7], 1355-1367
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Hide details for Hufsky, Franziska (ed.)Hufsky, Franziska (ed.)
2012Röttger, Richard
Kreutzer, Christoph
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Baumbach, Jan
Online Transitivity Clustering of Biological Data with Missing Values
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Hide details for Hughes, EricHughes, Eric
2009[Susser, Simone]
Welsch, Christoph
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Domingues, Francisco S.
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Characterization of resistance to the protease inhibitor boceprevir in hepatitis C virus-infected patients.
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Hide details for Hurni, SeverineHurni, Severine
2010[Brunner, Susanne]
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Mayr, Gabriele
Albrecht, Mario
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Intragenic allele pyramiding combines different specificities of wheat Pm3 resistance alleles
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Hide details for Huse, KlausHuse, Klaus
2007[Hampe, Jochen]
[Franke, Andre]
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Albrecht, Mario
Mayr, Gabriele
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A genome-wide association scan of nonsynonymous SNPs identifies a susceptibility variant for Crohn disease in ATG16L1
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Systematic association mapping identifies NELL1 as a novel IBD disease gene
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Lengauer, Thomas
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Sarcoidosis is associated with a truncating splice site mutation in BTNL2
In: Nature Genetics [37], 357-364
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Hide details for Huson, Daniel (ed.)Huson, Daniel (ed.)
2006Schlicker, Andreas
Huthmacher, Carola
Ramírez, Fidel
Lengauer, Thomas
Albrecht, Mario
Functional evaluation of domain-domain interactions and human protein interaction networks
In: German Conference on Bioinformatics (GCB 2006), 115-126
Proceedings Article
5
Hide details for Huthmacher, CarolaHuthmacher, Carola
2007Schlicker, Andreas
Huthmacher, Carola
Ramírez, Fidel
Lengauer, Thomas
Albrecht, Mario
Attachment IconFunctional evaluation of domain-domain interactions and human protein interaction networks
In: Bioinformatics [23], 859-865
Journal Article
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Albrecht, Mario
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Assenov, Yassen
Blankenburg, Hagen
Huthmacher, Carola
Ramírez, Fidel
Schlicker, Andreas
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Attachment IconThe implications of alternative splicing in the ENCODE protein complement
In: Proceedings of the National Academy of Sciences [104], 5495-5500
Journal Article
2006Huthmacher, CarolaDecomposing Protein Networks Into
Domain-Domain Interactions
Eberhard Karls University Tübingen
Thesis - other
2006Schlicker, Andreas
Huthmacher, Carola
Ramírez, Fidel
Lengauer, Thomas
Albrecht, Mario
Functional evaluation of domain-domain interactions and human protein interaction networks
In: German Conference on Bioinformatics (GCB 2006), 115-126
Proceedings Article
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Huthmacher, Carola
[Tosatto, Silvio C.E.]
Lengauer, Thomas
Decomposing protein networks into domain-domain interactions
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2013[Liu, Jimmy Z.]
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[Rushbrook, Simon M.]
Doncheva, Nadezhda T.
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[Weismuller, Tobias J.]
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Mayr, Gabriele
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[Schrumpf, Erik]
[Vermeire, Severine]
Albrecht, Mario
[The UK-PSCSC Consortium,]
[The International IBD Genetics Consortium,]
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[Anderson, Carl A.]
[Karlsen, Tom H.]
Dense genotyping of immune-related disease regions identifies nine new risk loci for primary sclerosing cholangitis
In: Nature Genetics [45], 670-677
Journal Article
1
Hide details for IBSEN study group, theIBSEN study group, the
2008[Franke, Andre]
[Balschun, Tobias]
[Karlsen, Tom H.]
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Mayr, Gabriele
Domingues, Francisco S.
Albrecht, Mario
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Universität des Saarlandes
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Hide details for Ikegami, ChiakiIkegami, Chiaki
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Expression and Functional Analyses of Novel Mutations ot ATP-Binding Cassette Transporter-1 in Japanese Patients with High-Density Lipoprotein Deficiency
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Hide details for Illig, ThomasIllig, Thomas
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Association between variants of PRDM1 and NDP52 and Crohn's disease, based on exome sequencing and functional studies
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Hide details for Immesberger, StefanImmesberger, Stefan
2005Immesberger, StefanAttachment IconA Prefiltering Method to Speed up Protein
Structure Prediction
Universität des Saarlandes
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Hide details for Inamdar, HarshalInamdar, Harshal
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Hide details for Incardona, FrancescaIncardona, Francesca
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