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MPI-INF D3 Publications

MPI-INF D3 Publications

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#YearTitleType
1
Hide details for Watson, Thornton, Tress, Lopez, Valencia, Redfern, Orengo, Sommer, DominguesWatson, Thornton, Tress, Lopez, Valencia, Redfern, Orengo, Sommer, Domingues
2008Structure to function
In: Modern Genome Annotation, 239-262
Part of a Book
2
Hide details for WeimannWeimann
2011Functional Profiling in Metagenomics
Universität des Saarlandes
Thesis - Masters thesis
2009Using multidimensional Scaling for visualizing similarities of proteins
Universität des Saarlandes
Thesis - Bachelor thesis
1
Hide details for WeinholdWeinhold
2006Inference of Protein Function based on Functionally Conserved Regions in Sequence and Structure Space
Universität des Saarlandes
Thesis - Masters thesis
1
Hide details for Weinhold, Sander, Domingues, Lengauer, SommerWeinhold, Sander, Domingues, Lengauer, Sommer
2008Attachment IconLocal function conservation in sequence and structure space
In: PLoS Computational Biology [4], e1000105
Journal Article
1
Hide details for WeissWeiss
2005Attachment IconGenerating Frequency Profiles from Multiple
Structure Alignments
Universität des Saarlandes
Thesis - Bachelor thesis
1
Hide details for WeisserWeisser
2007Estimating the local variance of protein structure models
Universität des Saarlandes
Thesis - Masters thesis
1
Hide details for Weisser, Altmann, Sierra, Incardona, Struck, Sönnerborg, Kaiser, Zazzi, Tschochner, Walter, LengauerWeisser, Altmann, Sierra, Incardona, Struck, Sönnerborg, Kaiser, Zazzi, Tschochner, Walter, Lengauer
2010Only Slight Impact of Predicted Replicative Capacity for Therapy Response Prediction
In: PLoSOne [5], e9044,1-e9044,10
Electronic Journal Article
1
Hide details for Welker, Hofmann, Welsch, von Wagner, Herrmann, Lengauer, Zeuzem, SarrazinWelker, Hofmann, Welsch, von Wagner, Herrmann, Lengauer, Zeuzem, Sarrazin
2007Correlation nonstructural (NS)4B amino acid variations with initial viral kinetics during interferon-alpha-based therapy in HCV-1b-infected patients
In: Journal of Viral Hepatitis [14], 338-349
Journal Article
1
Hide details for Welker, Welsch, Meyer, Antes, Albrecht, Forestier, Kronenberger, Lengauer, Piiper, Zeuzem, SarrazinWelker, Welsch, Meyer, Antes, Albrecht, Forestier, Kronenberger, Lengauer, Piiper, Zeuzem, Sarrazin
2010Dimerization of the hepatitis C virus nonstructural protein 4B depends on the integrity of an aminoterminal basic leucine zipper
In: Protein Science [19], 1327-1336
Journal Article
1
Hide details for Welker, Welsch, Ochs, Hofmann, Herrmann, Piiper, Hartmann, Zeuzem, Sarrazin, KronenbergerWelker, Welsch, Ochs, Hofmann, Herrmann, Piiper, Hartmann, Zeuzem, Sarrazin, Kronenberger
2011Comparison of Envelope 2 CD81 binding regions in PBMC-derived versus serum-derived hepatitis C virus isolates: higher conservation of CD81 region 2 in PBMC isolates
In: Journal of Viral Hepatitis [18], 181-192
Journal Article
1
Hide details for Wellington, Yang, Zhou, Clee, Tan, Hirano, Zwarts, Kwok, Gelfer, Marcil, Newman, Roomp, Singaraja, Collins, ZhWellington, Yang, Zhou, Clee, Tan, Hirano, Zwarts, Kwok, Gelfer, Marcil, Newman, Roomp, Singaraja, Collins, Zhang, Groen, Hovingh, Brownlie, Tafuri, Genest, Kastelein, Hayden
2002Truncation mutations in ABCA1 suppress normal upregulation of full-length ABCA1 by 9-cis-retinoic acid and 22-R-hydroxycholesterol
In: Journal of Lipid Research [43], 1939-1949
Journal Article
1
Hide details for Welsch, Albrecht, Maydt, Herrmann, Welker, Sarrazin, Scheidig, Lengauer, ZeuzemWelsch, Albrecht, Maydt, Herrmann, Welker, Sarrazin, Scheidig, Lengauer, Zeuzem
2007Structural and functional comparison of the non-structural protein 4B of flaviviridae
In: Journal of Molecular Graphics and Modeling [26], 546-557
Journal Article
1
Hide details for Welsch, Domingues, Susser, Antes, Hartmann, Mayr, Schlicker, Sarrazin, Albrecht, Zeuzem, LengauerWelsch, Domingues, Susser, Antes, Hartmann, Mayr, Schlicker, Sarrazin, Albrecht, Zeuzem, Lengauer
2008Attachment IconMolecular basis of telaprevir resistance due to V36 and T54 mutations in the NS3-4A protease of HCV
In: Genome Biology [9], R16
Journal Article
1
Hide details for Welsch, Schweizer, Shimakami, Domingues, Kim, Lemon, AntesWelsch, Schweizer, Shimakami, Domingues, Kim, Lemon, Antes
2012Ketoamide Resistance and Hepatitis C Virus Fitness in Val55 Variants
of the NS3 Serine Protease
In: Antimicrobial Agents and Chemotherapy [56], 1907-1915
Journal Article
1
Hide details for Welsch, Shimakami, Hartmann, Yang, Domingues, Lengauer, Zeuzem, LemonWelsch, Shimakami, Hartmann, Yang, Domingues, Lengauer, Zeuzem, Lemon
2012Peptidomimetic Escape Mechanisms Arise via Genetic Diversity in the Ligand-Binding Site of the Hepatitis C Virus NS3/4A Serine Protease
In: Gastroenterology [142], 654-663
Journal Article
1
Hide details for Wemmert, Ketter, Rahnenführer, Beerenwinkel, Strowitzki, Feiden, Hartmann, Lengauer, Stockhammer, Zang, Meese,Wemmert, Ketter, Rahnenführer, Beerenwinkel, Strowitzki, Feiden, Hartmann, Lengauer, Stockhammer, Zang, Meese, Steudel, von Deimling, Urbschat
2005Attachment IconPatients with high grade gliomas harboring delections of chromosomes 9p and 10q benefit from temozolomide treatment
In: Neoplasia [7], 883-893
Journal Article
1
Hide details for Wichard, Ogorzalek, Merkwirth, BröckerWichard, Ogorzalek, Merkwirth, Bröcker
2004Finite iteration DT-CNN with stationary templates
In: Proceedings of the 8th IEEE International Workshop on Cellular Neural Networks and their Applications (CNNA 2004), 459-464
Proceedings Article
1
Hide details for Wittkop, Emig, Lange, Rahmann, Albrecht, Morris, Böcker, Stoye, BaumbachWittkop, Emig, Lange, Rahmann, Albrecht, Morris, Böcker, Stoye, Baumbach
2010Partitioning biological data with transitivity clustering
In: Nature Methods [7], 419-420
Journal Article
1
Hide details for Wittkop, Emig, Truss, Albrecht, Böcker, BaumbachWittkop, Emig, Truss, Albrecht, Böcker, Baumbach
2011Comprehensive cluster analysis with Transitivity Clustering
In: Nature Protocols [6], 285-295
Journal Article
1
Hide details for Wittkop, Rahmann, BaumbachWittkop, Rahmann, Baumbach
2010Efficient Online Transcription Factor Binding Site Adjustment by Integrating Transitive Graph Projection with MoRAine 2.0
In: Special Issue: 6th International Symposium on Integrative Bioinformatics, 117,1-117,11
Electronic Proceedings Article
1
Hide details for Wittkop, Rahmann, Roettger, Boecker, BaumbachWittkop, Rahmann, Roettger, Boecker, Baumbach
2011Extension and robustness of Transitivity Clustering for protein-protein interaction network analysis
In: Internet Mathematics [7], 255-273
Journal Article
1
Hide details for Wohlers, Domingues, KlauWohlers, Domingues, Klau
2010Towards optimal alignment of protein structure distance matrices
In: Bioinformatics [26], 2273-2280
Journal Article
1
Hide details for Wolf, Walter, Beerenwinkel, Keulen, Kaiser, Hoffmann, Lengauer, Selbig, Vandamme, Korn, SchmidtWolf, Walter, Beerenwinkel, Keulen, Kaiser, Hoffmann, Lengauer, Selbig, Vandamme, Korn, Schmidt
2003Tenofovir resistance and resensitization
In: Antimicrobial Agents and Chemotherapy [47], 3478-3484
Journal Article
2
Hide details for Xi, Bock, Müller, Sun, Meissner, LiXi, Bock, Müller, Sun, Meissner, Li
2012RRBSMAP: a fast, accurate and user-friendly alignment tool for reduced representation bisulfite sequencing
In: Bioinformatics [28], 430-432
Journal Article
2011RRBSMAP: A Fast, Accurate and User-friendly Alignment Tool for Reduced Representation Bisulfite Sequencing
In: Bioinformatics [28], 430-432
Journal Article
1
Hide details for YalakYalak
2005Attachment IconAnalysis of Mutations in the Death Domains, Death Effector Domains, Caspase
Recruitment Domains, and Pyrin Domains
Universität des Saarlandes
Thesis - Bachelor thesis
1
Hide details for Yamanishi, Pauwels, Saigo, StoventYamanishi, Pauwels, Saigo, Stovent
2011Extracting Sets of Chemical Substructures and Protein Domains Governing Drug-Target Interactions
In: Journal of Chemical Information and Modeling [51], 1183-1194
Journal Article
1
Hide details for YinYin
2005Model Selection for Mixtures of Mutagenetic Trees
Universität des Saarlandes
Thesis - Masters thesis
1
Hide details for Yin, Beerenwinkel, Rahnenführer, LengauerYin, Beerenwinkel, Rahnenführer, Lengauer
2006Attachment IconModel Selection for Mixtures of Mutagenetic Trees
In: Statistical Applications in Genetics and Molecular Biology [5], Article 17
Journal Article
1
Hide details for Zacharek, Fillmore, Lau, Gludish, Chou, Ho, Zamponi, Gazit, Bock, Jäger, Smith, Kim, Saunders, Wong, Lee, RoacZacharek, Fillmore, Lau, Gludish, Chou, Ho, Zamponi, Gazit, Bock, Jäger, Smith, Kim, Saunders, Wong, Lee, Roach, Rossi, Meissner, Gimelbrant, Park, Kim
2011Lung stem cell self-renewal relies on BMI1-dependent control of expression at imprinted loci
In: Cell Stem Cell [9], 272-280
Journal Article
1
Hide details for Zanon, Rakovic, Blankenburg, Doncheva, Schwienbacher, Serafin, Alexa, Weichenberger, Albrecht, Klein, Hicks, PZanon, Rakovic, Blankenburg, Doncheva, Schwienbacher, Serafin, Alexa, Weichenberger, Albrecht, Klein, Hicks, Pramstaller, Domingues, Pichler
2013Profiling of parkin-binding partners using tandem affinity purification
In: PLoS ONE [8], 1-17
Journal Article
1
Hide details for Zazzi, Aharoni, Altmann, Baszó, Bidgood, Borgulya, Denholm-Prince, Fielder, Kaiser, Kent, Lengauer, Nepusz, NeZazzi, Aharoni, Altmann, Baszó, Bidgood, Borgulya, Denholm-Prince, Fielder, Kaiser, Kent, Lengauer, Nepusz, Neuvirth, Peres, Petroczi, Prosperi, Romano, Rosen-Zvi, Schülter, Sing, Sonnerborg, Thompson, Ulivi, Zalány, Incardona
2007EuResist: exploration of multiple modeling techniques for prediction of response to treatment
In: Proceedings of the 5th European HIV Drug Resistance Workshop, -
Poster
1
Hide details for Zazzi, Incardona, Rosen-Zvi, Prosperi, Lengauer, Altmann, Sonnerborg, Lavee, Schülter, KaiserZazzi, Incardona, Rosen-Zvi, Prosperi, Lengauer, Altmann, Sonnerborg, Lavee, Schülter, Kaiser
2012Predicting Response to Antiretroviral Treatment by Machine Learning:
The EuResist Project
In: Intervirology [55], 123-127
Journal Article
1
Hide details for Zazzi, Kaiser, Sönnerborg, Struck, Altmann, Prosperi, Rosen-Zvi, Petroczi, Peres, Schülter, Boucher, Brun-VeziZazzi, Kaiser, Sönnerborg, Struck, Altmann, Prosperi, Rosen-Zvi, Petroczi, Peres, Schülter, Boucher, Brun-Vezinet, Harigan, Morris, Obermeier, Perno, Shafer, Vandamme, van Laethem, Wensing, Lengauer, Incardona
2010Prediction of Response to Antiretroviral Therapy by Human Experts and by the EuResist Data-Driven Expert System (the EVE Study)
In: HIV Medicine [Early View], 1-8
Electronic Journal Article
1
Hide details for Zazzi, Kaiser, Sönnerborg, Struck, Altmann, Prosperi, Rosen-Zvi, Petroczi, Peres, Schülter, Boucher, Brun-VeziZazzi, Kaiser, Sönnerborg, Struck, Altmann, Prosperi, Rosen-Zvi, Petroczi, Peres, Schülter, Boucher, Brun-Vezinet, Harrigan, Morris, Obermeier, Perno, Phanuphak, Pillay, Shafer, Vandamme, Van Laethem, Wensing, Lengauer, Incardona
2011Prediction of Response to Antiretroviral Therapy by Human Experts and by the EuResist Data-Driven Expert System (the EVE study)
In: HIV Medicine [12], 211-218
Journal Article
1
Hide details for ZeidlerZeidler
2012Cloudbasierte Analyse von viralen Sequenzdaten der neuesten Generation
Universität des Saarlandes
Thesis - Bachelor thesis
1
Hide details for Zhang, Rohde, Tierling, Jurkowski, Bock, Santacruz, Ragozin, Reinhardt, Groth, Walter, JeltschZhang, Rohde, Tierling, Jurkowski, Bock, Santacruz, Ragozin, Reinhardt, Groth, Walter, Jeltsch
2009Attachment IconDNA methylation analysis of chromosome 21 gene promoters at single base pair and single allele resolution
In: PLoS Genetics [5], e1000438:1-e1000438:15
Electronic Journal Article
1
Hide details for ZhuZhu
2010Characterization, classification and alignment of protein-protein interfaces
Universität des Saarlandes
Thesis - PhD thesis
2
Hide details for Zhu, Domingues, Sommer, LengauerZhu, Domingues, Sommer, Lengauer
2006NOXclass: prediction of protein-protein interaction types
In: BMC Bioinformatics [7], 1-15
Electronic Journal Article
2005Analysis and prediction of protein-protein interaction types
In: 4th European Conference on Computational Biology (ECCB05), 1
Poster
1
Hide details for Zhu, Sommer, Lengauer, DominguesZhu, Sommer, Lengauer, Domingues
2008Attachment IconAlignment of Non-Covalent Interactions at Protein-Protein Interfaces
In: PLoS ONE [3], e1926
Journal Article
1
Hide details for Zien, Aigner, Zimmer, LengauerZien, Aigner, Zimmer, Lengauer
2001Centralization: A biologically sensible method for the normalization of gene expression data
In: Bioinformatics [17], 323S-331S
Journal Article
2
Hide details for Zien, Fluck, Zimmer, LengauerZien, Fluck, Zimmer, Lengauer
2003Microarrays: How many do you need?
In: Journal of Computational Biology [10], 653-667
Journal Article
2002Microarrays: How Many Do You Need?
In: Proceedings of the Sixth Annual Conference on Research in Computational Molecular Biology (RECOMB2002), 321-330
Proceedings Article
1
Hide details for Ziller, Gu, Müller, Donaghey, Tsai, Kohlbacher, De Jager, Rosen, Bennett, Bernstein, Gnirke, MeissnerZiller, Gu, Müller, Donaghey, Tsai, Kohlbacher, De Jager, Rosen, Bennett, Bernstein, Gnirke, Meissner
2013Charting a dynamic DNA methylation landscape of the human genome
In: Nature [500], 477–481
Journal Article
1
Hide details for Ziller, Müller, Liao, Zhang, Gu, Bock, Boyle, Epstein, Bernstein, Lengauer, Gnirke, MeissnerZiller, Müller, Liao, Zhang, Gu, Bock, Boyle, Epstein, Bernstein, Lengauer, Gnirke, Meissner
2011Genomic distribution and inter-sample variation of non-CpG methylation across human cell types
In: PLoS Genetics [17], e1002389,1-e1002389,15
Electronic Journal Article
1
Hide details for ZimmerZimmer
2006Functional Site Scaffolds
Universität des Saarlandes
Thesis - Bachelor thesis
1
Hide details for Zotenko, Mestre, O'Leary, PrzytyckaZotenko, Mestre, O'Leary, Przytycka
2008Why Do Hubs in the Yeast Protein Interaction Network Tend To Be Essential: Reexamining the Connection between the Network Topology and Essentiality
In: PLoS Computational Biology [4], e1000140
Journal Article
1
Hide details for Zwarts, Clee, Zwinderman, Engert, Singaraja, Loubser, James, Roomp, Hudson, Jukema, Kastelein, HaydenZwarts, Clee, Zwinderman, Engert, Singaraja, Loubser, James, Roomp, Hudson, Jukema, Kastelein, Hayden
2002ABCA1 regulatory variants influence coronary artery disease independent of effects on plasma lipid levels
In: Clinical Genetics [61], 115-125
Journal Article
639

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