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Author, Editor(s)

Author(s):

Bock, Christoph
Lengauer, Thomas
Reither, Sabine
Mikeska, Thomas
Paulsen, Martina
Walter, Jörn

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Not MPG Author(s):

Reither, Sabine
Mikeska, Thomas
Paulsen, Martina
Walter, Jörn

BibTeX cite key*:

Bock2005

Title

Title*:

BiQ Analyzer: visualization and quality control for DNA methylation data from bisulfite sequencing

Journal

Journal Title*:

Bioinformatics

Journal's URL:


Download URL
for the article:

http://bioinformatics.oxfordjournals.org/cgi/reprint/bti652?ijkey=GxgNMfE0v8sBfsW&keytype=ref

Language:

English

Publisher

Publisher's
Name:

Oxford University Press

Publisher's URL:


Publisher's
Address:

Oxford, UK

ISSN:

13674803

Vol, No, pp, Date

Volume*:

21

Number:

21

Publishing Date:

2005

Pages*:

4067-4068

Number of
VG Pages:

2

Page Start:

4067

Page End:

4068

Sequence Number:


DOI:


Note, Abstract, ©

Note:


(LaTeX) Abstract:

SUMMARY: Manual processing of DNA methylation data from bisulfite sequencing is a tedious and error-prone task. Here we present an interactive software tool that provides start-to-end support for this process. In an easy-to-use manner, the tool helps the user to import the sequence files from the sequencer, to align them, to exclude or correct critical sequences, to document the experiment, to perform basic statistics and to produce publication-quality diagrams.Emphasis is put on quality control: The program automatically assesses data quality and provides warnings and suggestions for dealing with critical sequences. The BiQ Analyzer program is implemented in the Java programming language and runs on any platform for which a recent Java virtual machine is available. AVAILABILITY: The program is available without charge for non-commercial users and can be downloaded from http://biq-analyzer.bioinf.mpi-inf.mpg.de/ CONTACT: cbock@mpi-inf.mpg.de.

URL for the Abstract:


Categories,
Keywords:


HyperLinks / References / URLs:


Copyright Message:


Personal Comments:


Download
Access Level:

Intranet

Correlation

MPG Unit:

Max-Planck-Institut für Informatik



MPG Subunit:

Computational Biology and Applied Algorithmics

Appearance:

MPII WWW Server, MPII FTP Server, MPG publications list, university publications list, working group publication list, Fachbeirat, VG Wort


BibTeX Entry:

@ARTICLE{Bock2005,
AUTHOR = {Bock, Christoph and Lengauer, Thomas and Reither, Sabine and Mikeska, Thomas and Paulsen, Martina and Walter, J{\"o}rn},
TITLE = {{BiQ Analyzer}: visualization and quality control for {DNA} methylation data from bisulfite sequencing},
JOURNAL = {Bioinformatics},
PUBLISHER = {Oxford University Press},
YEAR = {2005},
NUMBER = {21},
VOLUME = {21},
PAGES = {4067--4068},
ADDRESS = {Oxford, UK},
ISBN = {13674803},
}


Entry last modified by Christoph Bock, 03/20/2007
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Editor(s)
Christoph Bock
Created
10/26/2005 05:03:12 PM
Revisions
10.
9.
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Editor(s)
Christoph Bock
Christoph Bock
Christoph Bock
Christoph Bock
Christoph Bock
Edit Dates
20.03.2007 17:36:40
08/11/2006 10:18:49
08/11/2006 10:15:47
07/11/2006 21:13:34
07/11/2006 21:13:22