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Author, Editor(s)

Author(s):

Hanisch, Daniel
Zimmer, Ralf
Lengauer, Thomas

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Not MPG Author(s):

Hanisch, Daniel
Zimmer, Ralf

BibTeX cite key*:

Lengauer2002b

Title

Title*:

ProML - the Protein Markup Language for specification of protein sequences, structures and families

Journal

Journal Title*:

In Silico Biology

Journal's URL:

http://iospress.metapress.com/link.asp?id=105655

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for the article:


Language:

English

Publisher

Publisher's
Name:

IOS Press

Publisher's URL:

http://iospress.metapress.com/

Publisher's
Address:

Amsterdam, the Netherlands

ISSN:

1386-6338

Vol, No, pp, Date

Volume*:

2

Number:

3

Publishing Date:

2002

Pages*:

313 - 324

Number of
VG Pages:

10

Page Start:


Page End:


Sequence Number:


DOI:


Note, Abstract, ©

Note:


(LaTeX) Abstract:

We propose a specification language ProML for protein sequences, structures, and families based on the open XML standard. The language allows for portable, system-independent, machine-parsable and human-readable representation of essential features of proteins. The language is of immediate use for several bioinformatics applications: we discuss clustering of proteins into families and the representation of the specific shared features of the respective clusters. Moreover, we use ProML for specification of data used in fold recognition bench-marks exploiting experimentally derived distance constraints.

URL for the Abstract:


Categories,
Keywords:

Protein Markup Language, ProML, XML, protein properties, protein families, protein structures, distance constraints, protein cluster

HyperLinks / References / URLs:

http://iospress.metapress.com/link.asp?id=5ptuxyv1g2k3ab44
http://iospress.metapress.com/openurl.asp?genre=article&issn=1386-6338&volume=2&issue=3&spage=313

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Personal Comments:


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Access Level:

Public

Correlation

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Appearance:

MPII WWW Server, MPII FTP Server, MPG publications list, university publications list, working group publication list, Fachbeirat, VG Wort


BibTeX Entry:

@ARTICLE{Lengauer2002b,
AUTHOR = {Hanisch, Daniel and Zimmer, Ralf and Lengauer, Thomas},
TITLE = {ProML - the Protein Markup Language for specification of protein sequences, structures and families},
JOURNAL = {In Silico Biology},
PUBLISHER = {IOS Press},
YEAR = {2002},
NUMBER = {3},
VOLUME = {2},
PAGES = {313 -- 324},
ADDRESS = {Amsterdam, the Netherlands},
ISBN = {1386-6338},
}


Entry last modified by Uwe Brahm, 10/22/2003
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Editor(s)
Ruth Schneppen-Christmann
Created
11/25/2002 01:44:56 PM
Revisions
11.
10.
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Editor(s)
Uwe Brahm
Christine Kiesel
Christine Kiesel
Christine Kiesel
Christine Kiesel
Edit Dates
10/22/2003 07:51:26 PM
02.09.2003 14:49:57
12.08.2003 14:36:44
31.07.2003 09:28:49
22.05.2003 10:52:26
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