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MPI-INF D3 Publications

MPI-INF D3 Publications

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Author/EditorYearTitleTypeUnit / Correlation
Ellinghaus, Zhang, Zeissig, Lipinski, Till, Jiang, Stade, Bromberg, Ellinghaus, Keller, Rivas, Skieceviciene, Doncheva, Liu, Liu, Jiang, Forster, Mayr, Albrecht, Häsler, Boehm, Goodall, Berzuini, Lee, Andersen, Vogel, Kupcinskas, Kayser, Krawczak, Nikolaus, Weersma, Ponsioen, Sans, Wijmenga, Strachan, McArdle, Vermeire, Rutgeerts, Sanderson, Mathew, Vatn, Wang, Nöthen, Duerr, Büning, Brand, Glas, Winkelmann, Illig, Latiano, Annese, Halfvarson, D'Amato, Daly, Nothnagel, Karlsen, Subramani, Rosenstiel, Schreiber, Parkes, Franke2013Association between variants of {PRDM1} and {NDP52} and {Crohn's} disease, based on exome sequencing and functional studiesJournal ArticleMax-Planck-Institut für Informatik
Computational Biology and Applied Algorithmics
Halachev, Bast, Lengauer, Bock2013Interactive exploration of large genome and epigenome datasets in real timeJournal ArticleMax-Planck-Institut für Informatik
Computational Biology and Applied Algorithmics
Hauschild, Baumbach, Baumbach2013Attachment IconPaving the Way for Automated Clinical Breath Analysis and Biomarker DetectionMiscellaneousMax-Planck-Institut für Informatik
Computational Biology and Applied Algorithmics
Hauschild, Kopczynski, D'Addario, Baumbach, Rahmann, Baumbach2013Peak Detection Method Evaluation for Ion Mobility Spectrometry by using Machine Learning ApproachesElectronic Journal ArticleMax-Planck-Institut für Informatik
Computational Biology and Applied Algorithmics
Kacprowski, Doncheva, Albrecht2013Attachment IconNetworkPrioritizer: a versatile tool for network-based prioritization of candidate disease genes or other moleculesJournal ArticleMax-Planck-Institut für Informatik
Computational Biology and Applied Algorithmics
Molecular Networks in Medical Bioinformatics
Kalaghatgi, Lawyer2013Inter-country mixing in HIV transmission clusters: a pan-European phylodynamics studyPosterMax-Planck-Institut für Informatik
Computational Biology and Applied Algorithmics
Kalinina, Pfeifer, Lengauer2013Modelling binding between CCR5 and CXCR4 receptors and their ligands suggests the surface electrostatic potential of the co-receptor to be a key player in the HIV-1 tropismJournal ArticleMax-Planck-Institut für Informatik
Computational Biology and Applied Algorithmics
Le, Schulz, McCauley, Hinman, Bar-Joseph2013Probabilistic error correction for {RNA} sequencingJournal ArticleMax-Planck-Institut für Informatik
Computational Biology and Applied Algorithmics
Liu, Hov, Folseraas, Ellinghaus, Rushbrook, Doncheva, Andreassen, Weersma, Weismuller, Eksteen, Invernizzi, Hirschfield, Gotthardt, Pares, Ellinghaus, Shah, Juran, Milkiewicz, Rust, Schramm, Muller, Srivastava, Dalekos, Nothen, Herms, Winkelmann, Mitrovic, Braun, Ponsioen, Croucher, Sterneck, Teufel, Mason, Saarela, Leppa, Dorfman, Alvaro, Floreani, Onengut-Gumuscu, Rich, Thompson, Schork, Naess, Thomsen, Mayr, Konig, Hveem, Cleynen, Gutierrez-Achury, Ricano-Ponce, van Heel, Bjornsson, Sandford, Durie, Melum, Vatn, Silverberg, Duerr, Padyukov, Brand, Sans, Annese, Achkar, Boberg, Marschall, Chazouilleres, Bowlus, Wijmenga, Schrumpf, Vermeire, Albrecht, The UK-PSCSC Consortium, The International IBD Genetics Consortium, Rioux, Alexander, Bergquist, Cho, Schreiber, Manns, Farkkila, Dale, Chapman, Lazaridis, The International PSC Study Group, Franke, Anderson, Karlsen2013Dense genotyping of immune-related disease regions identifies nine new risk loci for primary sclerosing cholangitisJournal ArticleMax-Planck-Institut für Informatik
Computational Biology and Applied Algorithmics
Neumann-Fraune, Beggel, Pfister, Kaiser, Verheyen2013High frequency of complex mutational patterns in lamivudine resistant hepatitis B virus isolatesJournal ArticleMax-Planck-Institut für Informatik
Computational Biology and Applied Algorithmics
Patil2013Genome Signature based Sequence Comparison for Taxonomic Assignment and tree inferenceThesis - Doctoral dissertationMax-Planck-Institut für Informatik
Computational Biology and Applied Algorithmics
Pfeifer, Lengauer2013Association Between HIV-1 Coreceptor Usage and Resistance to Some Broadly Neutralizing AntibodiesPosterMax-Planck-Institut für Informatik
Computational Biology and Applied Algorithmics
Pironti2013HIV-1 fitness landscape models for indinavir treatment pressure using observed evolution in longitudinal sequence data are predictive for treatment failureJournal ArticleMax-Planck-Institut für Informatik
Computational Biology and Applied Algorithmics
Pironti, Lengauer, Pfeifer2013Effects of sequencing errors on geno2pheno[coreceptor] predictionsPosterMax-Planck-Institut für Informatik
Computational Biology and Applied Algorithmics
Pironti, Lengauer, Pfeifer2013In silico analysis of the effects of sequencing errors on geno2pheno[coreceptor]PosterMax-Planck-Institut für Informatik
Computational Biology and Applied Algorithmics
Radivojac, Clark, Oron, Schnoes, Wittkop, Sokolov, Graim, Funk, Verspoor, Ben-Hur, Pandey, Yunes, Talwalkar, Repo, Souza, Piovesan, Casadio, Wang, Cheng, Fang, Gough, Koskinen, T\"{o}r\"{o}nen, Nokso-Koivisto, Holm, Cozzetto, Buchan, Bryson, Jones, Limaye, Inamdar, Datta, Manjari, Joshi, Chitale, Kihara, Lisewski, Erdin, Venner, Lichtarge, Rentzsch, Yang, Romero, Bhat, Paccanaro, Hamp, Ka\ss ner, Seemayer, Vicedo, Schaefer, Achten, Auer, Boehm, Braun, Hecht, Heron, H\"{o}nigschmid, Hopf, Kaufmann, Kiening, Krompass, Landerer, Mahlich, Roos, Bj\"{o}rne, Salakoski, Wong, Shatkay, Gatzmann, Sommer, Wass, Sternberg, Skunca, Supek, Bo\v{s}njak, Panov, D\v{z}eroski, Smuc, Kourmpetis, van Dijk, Braak, Zhou, Gong, Dong, Tian, Falda, Fontana, Lavezzo, {Di Camillo}, Toppo, Lan, Djuric, Guo, Vucetic, Bairoch, Linial, Babbitt, Brenner, Orengo, Rost, Mooney, Friedberg2013A large-scale evaluation of computational protein function predictionJournal ArticleMax-Planck-Institut für Informatik
Computational Biology and Applied Algorithmics
Röttger, Kalaghatgi, Sun, de Castro Soares, Azevedo, Wittkop, Baumbach2013Density Parameter Estimation for Finding Clusters of Homologous Proteins - Tracing Actinobacterial Pathogenicity Life StylesJournal ArticleMax-Planck-Institut für Informatik
Computational Systems Biology
Sandoval, Mendez-Gonzales, Nadal, Chen, Carmona, Sayols, Moran, Heyn, Vizoso, Gomez, Sanchez-Cespedes, Assenov, Müller, Bock, Taron, Mora, Muscarella, Liloglou, Davies, Pollan, Pajares, Torre, Montuenga, Brambilla, Field, Roz, Lo Iacono, Scagliotti, Rosell, Beer, Esteller2013A Prognostic DNA Methylation Signature for Stage I Non-Small-Cell Lung CancerJournal ArticleMax-Planck-Institut für Informatik
Computational Biology and Applied Algorithmics
Schelhorn, Fischer, Tolosi, Altmüller, Nürnberg, Pfister, Lengauer, Berthold2013Sensitive detection of viral transcripts in human tumor transcriptomesJournal ArticleMax-Planck-Institut für Informatik
Computational Biology and Applied Algorithmics
Schneider, Hauschild, Baumbach, Baumbach2013An Integrative Clinical Database and Diagnostics Platform for Biomarker Identification and Analysis in Ion Mobility Spectra of Human Exhaled AirElectronic Journal ArticleMax-Planck-Institut für Informatik
Computational Biology and Applied Algorithmics
Schulz, Pandit, Lino Cardenas, Ambalavanan, Kaminski, Bar-Joseph2013Reconstructing dynamic micro{RNA}-regulated interaction networksJournal ArticleMax-Planck-Institut für Informatik
Computational Biology and Applied Algorithmics
Simmer, Brinkmann, Assenov, Matarese, Kaan, Lengauer, Bock, Colantuoni, Altucci, Stunnenberg2013Comparative genome-wide DNA methylation analysis of colorectal tumor and matched human tissueJournal ArticleMax-Planck-Institut für Informatik
Computational Biology and Applied Algorithmics
Steijger, Abril, Engström, Kokocinski, Abril, Akerman, Alioto, Ambrosini, Antonarakis, Behr, Bohnert, Bucher, Cloonan, Derrien, Djebali, Du, Dudoit, Engström, Gerstein, Gingeras, Gonzalez, Grimmond, Habegger, Iseli, Jean, Kahles, Kokocinski, Lagarde, Leng, Lefebvre, Lewis, Mortazavi, Niermann, Rätsch, Reymond, Ribeca, Richard, Rougemont, Rozowsky, Sammeth, Sboner, Schulz, Searle, Solorzano, Solovyev, Stanke, Steijger, Stevenson, Stockinger, Valsesia, Weese, White, Wold, Wu, Wu, Zeller, Zerbino, Zhang, Hubbard, Guigó, Harrow, Bertone2013Assessment of transcript reconstruction methods for {RNA}-seqJournal ArticleMax-Planck-Institut für Informatik
Computational Biology and Applied Algorithmics
Tolosi, Theißen, Halachev, Hero, Berthold, Lengauer2013A method for finding consensus breakpoints in the cancer genome from copy number dataJournal ArticleMax-Planck-Institut für Informatik
Computational Biology and Applied Algorithmics
Zanon, Rakovic, Blankenburg, Doncheva, Schwienbacher, Serafin, Alexa, Weichenberger, Albrecht, Klein, Hicks, Pramstaller, Domingues, Pichler2013Profiling of parkin-binding partners using tandem affinity purificationJournal ArticleMax-Planck-Institut für Informatik
Computational Biology and Applied Algorithmics
Ziller, Gu, Müller, Donaghey, Tsai, Kohlbacher, De Jager, Rosen, Bennett, Bernstein, Gnirke, Meissner2013Charting a dynamic DNA methylation landscape of the human genomeJournal ArticleMax-Planck-Institut für Informatik
Computational Biology and Applied Algorithmics

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