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What and Who

Efficient Indexes for Jumbled Pattern Matching with Constant-Sized Alphabet

Tomasz Kociumaka
University of Warsaw
AG1 Mittagsseminar (own work)
AG 1, AG 2, AG 3, AG 4, AG 5, RG1, SWS, MMCI  
AG Audience
English

Date, Time and Location

Thursday, 20 June 2013
15:00
30 Minutes
E1 4
rotunda at 3rd floor
Saarbrücken

Abstract

We introduce efficient data structures for the indexing problem in non-standard stringology — jumbled pattern matching. Moosa and Rahman have given a construction of an index for jumbled pattern matching for the case of binary alphabets. They posed as an open problem the efficient solution for the case of larger alphabets. In this paper we provide an index for any constant-sized alphabet. We obtain the first o(n^2) time and space construction of an index with o(n) query time. In particular, our data structure can be implemented with O(n^(2−δ)) space and O(m^{2σδ}) query time for any δ > 0, where m is the length of the pattern and σ is the size of the alphabet (σ = O(1)). We also break the barrier of quadratic preprocessing time.

Contact

Pawel Gawrychowski
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Pawel Gawrychowski, 06/18/2013 10:55
Pawel Gawrychowski, 06/18/2013 10:52 -- Created document.